cluster # 5867

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5867 cluster # 5867 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5867#0 length = 901 sequences # 2

consensus_5867#1 length = 317 sequences # 1

consensusID : consensus_5867#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 901
fasta sequence

                              [CCCTCATCTCCCAGCCGACGATGAGCATCGAGGGCTCGGAGGGCCGGCGGCGGCGCAGGAGCTCGGTCGGCACGGCATCCTCCCGAGCGGCGAGCGGNCATCCGGCCTCCGCGCCGCCCCCTTCCTCCTTCAGCCTTCGTGCGCTCAAGGAAATCGGCGCGACCTTGGTAGGCGGCAGGATCCGGCGAGGAGTGGCTGCGCGTCGGCAGGCGTCGGCGTCGGTCAGCACCATCCTCCCCTGCCGCTCGGCTGCCTCGCCCCTCTTCCCTCTCCCCTCTCCCCTCTCTCATCTAGCGGCAGTGTGGGTCCCATCTGTGGACCCGCTGAGACGAAGAACGCGTANCAAAGTTGGCTACGCGGAGATGAGGCGCGCGCGTGGCTAGCTAACGTGGGCAAAAGAATATTCGCTTTTTTGGTTGAGGCTGAATACCACCTAGACCCATTGTGAATGGCCTAAGACCGATGGAGGCAACATTGCTACCGAA-GATGGAAGTGGCTTGTGTTATCATCTCCTTAGAGCATCTCCAAGAGACTCTTTATTCAGCTCTCTAAGTTAAAATTTAGCCAATATAAAGAAAAAAAAAGCTCTAACAGACTCTTCATCCTCCGGCTGGCCAAATGTAGCCAGTGGATTCATCCAGANGGCCAAATTGCTCCTCCGGCTGGCCAAATGTAGCCAGTCTCTCCACTGGCTAAAGGTGGGTCCCACTACCACTCTTAGCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCANGAAGNCGCAGCGCGCCCAGTCCGGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCACCCTGAGGCGCGCGGAGAGCAGCTGCACGAGGAGGCCCATGGCCATGGTCCAGAGGAGGAGCCAGAGCAGCGCATC]

[+] EMBL AU070757             [CCCTCATCTCCCAGCCGACGATGAGCATCGAGGGCTCGGAGGGCCGGCGGCGGCGCAGGAGCTCGGTCGGCACGGCATCCTCCCGAGCGGCGAGCGGNCATCCGGCCTCCGCGCCGCCCCCTTCCTCCTTCAGCCTTCGTGCGCTCAAGGAAATCGGCGCGACCTTGGTAGGCGGCAGGATCCGGCGAGGAGTGGCTGCGCGTCGGCAGGCGTCGGCGTCGGTCAGCACCATCCTCCCCTGCCGCTCGGCTGCCTCGCCCCTCTTCCCTCTCCCCTCTCCCCTCTCTCATCTAGCGGCAGTGTGGGTCCCATCTGTGGACCCGCTGAGACGAAGAACGCGTANCAAAGTTGGCTACGCGGAGATGAGGCGCGCGCGTGGCTAGCTAACGTGGGCAAAAGAATATTCGCTTTTTTGGTTGAGGCTGAATACCACCTAGACCCATTGTGAATGGCCTAAGACCGATGGAGGCAACATTGCTACCGAA GATGGAAGTGGCTTGTGTTATCATCTCCTTAGAGCATCTCCAAGAGACTCTTTATTCAGCTCTCTAAGTTAAAATTTAGCCAATATAAAGAAAAAAAAAGCTCTAACAGACTCTTCATCCTCCGGCTGGCCAAATGTAGCCAGTGGATTCATCCAGANGGCCAAATTGCTCCTCCGGCTGGCCAAATGTAGCCAGTCTCTCCACTGGC                                                                                                                                                                                                                ]
[+] EMBL AU082423             [                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGTGAATGGCCTAAGACCGATGGAGGCAACATTGCTACCGAAGGATGGAAGTGGCTTGTGTTATCATCTCCTTAGAGCATCTCCAAGAGACTCTTTATTCAGCTCTCTAAGTTAAAATTTAGCCAATATAAAGAAAAAAAAAGCTCTAACAGACTCTTCATCCTCCGGCTGGCCAAATGTAGCCAGTGGATTCATCCAGAGGGCCAAATTGCTCCTCCGGCTGGCCAAATGTAGCCAGTCTCTCCACTGGCTAAAGGTGGGTCCCACTACCACTCTTAGCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCANGAAGNCGCAGCGCGCCCAGTCCGGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCACCCTGAGGCGCGCGGAGAGCAGCTGCACGAGGAGGCCCATGGCCATGGTCCAGAGGAGGAGCCAGAGCAGCGCATC]




>consensus_5867#0
CCCTCATCTCCCAGCCGACGATGAGCATCGAGGGCTCGGAGGGCCGGCGGCGGCGCAGGA
GCTCGGTCGGCACGGCATCCTCCCGAGCGGCGAGCGGNCATCCGGCCTCCGCGCCGCCCC
CTTCCTCCTTCAGCCTTCGTGCGCTCAAGGAAATCGGCGCGACCTTGGTAGGCGGCAGGA
TCCGGCGAGGAGTGGCTGCGCGTCGGCAGGCGTCGGCGTCGGTCAGCACCATCCTCCCCT
GCCGCTCGGCTGCCTCGCCCCTCTTCCCTCTCCCCTCTCCCCTCTCTCATCTAGCGGCAG
TGTGGGTCCCATCTGTGGACCCGCTGAGACGAAGAACGCGTANCAAAGTTGGCTACGCGG
AGATGAGGCGCGCGCGTGGCTAGCTAACGTGGGCAAAAGAATATTCGCTTTTTTGGTTGA
GGCTGAATACCACCTAGACCCATTGTGAATGGCCTAAGACCGATGGAGGCAACATTGCTA
CCGAAGATGGAAGTGGCTTGTGTTATCATCTCCTTAGAGCATCTCCAAGAGACTCTTTAT
TCAGCTCTCTAAGTTAAAATTTAGCCAATATAAAGAAAAAAAAAGCTCTAACAGACTCTT
CATCCTCCGGCTGGCCAAATGTAGCCAGTGGATTCATCCAGANGGCCAAATTGCTCCTCC
GGCTGGCCAAATGTAGCCAGTCTCTCCACTGGCTAAAGGTGGGTCCCACTACCACTCTTA
GCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCANGAAGNCGCAGCGCGCCCAGTCC
GGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCACCCTGAGGCGCGCGG
AGAGCAGCTGCACGAGGAGGCCCATGGCCATGGTCCAGAGGAGGAGCCAGAGCAGCGCAT
C

consensusID : consensus_5867#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [ATGTCCAAGAGACTGTATGATGAGCTCTATGAGATAAAATGGAGGCAATATGAGGAAGAAAAGAGCTTTAACGGGGTCTTCATCCTCGGGGTGGCCAAAGGTAGCCAGTGGATTCATCCAGAGGGCCAAATTGCTCCTCGGGCGGGCCAAATGTAGCCAGTCTCTCCAGTGGATAAAGGTGGGTCCCACTACCACTCTTAGCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCAGAGCGCGCAGCGCGCCCAGTCCGGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCAACAGGAGGCGCGC]

[-] EMBL CB662389             [ATGTCCAAGAGACTGTATGATGAGCTCTATGAGATAAAATGGAGGCAATATGAGGAAGAAAAGAGCTTTAACGGGGTCTTCATCCTCGGGGTGGCCAAAGGTAGCCAGTGGATTCATCCAGAGGGCCAAATTGCTCCTCGGGCGGGCCAAATGTAGCCAGTCTCTCCAGTGGATAAAGGTGGGTCCCACTACCACTCTTAGCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCAGAGCGCGCAGCGCGCCCAGTCCGGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCAACAGGAGGCGCGC]




>consensus_5867#1
ATGTCCAAGAGACTGTATGATGAGCTCTATGAGATAAAATGGAGGCAATATGAGGAAGAA
AAGAGCTTTAACGGGGTCTTCATCCTCGGGGTGGCCAAAGGTAGCCAGTGGATTCATCCA
GAGGGCCAAATTGCTCCTCGGGCGGGCCAAATGTAGCCAGTCTCTCCAGTGGATAAAGGT
GGGTCCCACTACCACTCTTAGCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCAGAG
CGCGCAGCGCGCCCAGTCCGGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTG
GCCAACAGGAGGCGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5867#0      CCCTCATCTCCCAGCCGACGATGAGCATCGAGGGCTCGGAGGGCCGGCGGCGGCGCAGGA 60
consensus_5867#1      ------------------------------------------------------------
                                                                                  

consensus_5867#0      GCTCGGTCGGCACGGCATCCTCCCGAGCGGCGAGCGGNCATCCGGCCTCCGCGCCGCCCC 120
consensus_5867#1      ------------------------------------------------------------
                                                                                  

consensus_5867#0      CTTCCTCCTTCAGCCTTCGTGCGCTCAAGGAAATCGGCGCGACCTTGGTAGGCGGCAGGA 180
consensus_5867#1      ------------------------------------------------------------
                                                                                  

consensus_5867#0      TCCGGCGAGGAGTGGCTGCGCGTCGGCAGGCGTCGGCGTCGGTCAGCACCATCCTCCCCT 240
consensus_5867#1      ------------------------------------------------------------
                                                                                  

consensus_5867#0      GCCGCTCGGCTGCCTCGCCCCTCTTCCCTCTCCCCTCTCCCCTCTCTCATCTAGCGGCAG 300
consensus_5867#1      ------------------------------------------------------------
                                                                                  

consensus_5867#0      TGTGGGTCCCATCTGTGGACCCGCTGAGACGAAGAACGCGTANCAAAGTTGGCTACGCGG 360
consensus_5867#1      ------------------------------------------------------------
                                                                                  

consensus_5867#0      AGATGAGGCGCGCGCGTGGCTAGCTAACGTGGGCAAAAGAATATTCGCTTTTTTGGTTGA 420
consensus_5867#1      ------------------------------------------------------------
                                                                                  

consensus_5867#0      GGCTGAATACCACCTAGACCCATTGTGAATGGCCTAAGACCGATGGAGGCAACATTGCTA 480
consensus_5867#1      ------------------------------------------------------------
                                                                                  

consensus_5867#0      CCGAAGATGGAAGTGGCTTGTGTTATCATCTCCTTAGAGCATCTCCAAGAGACTCTTTAT 540
consensus_5867#1      ----------------------------------------ATGTCCAAGAGACTGTATGA 20
                                                              ** *********** * *  

consensus_5867#0      TCAGCTCTCTAAGTTAAAATTTAGCCAATATAAAGAAAAAAAAAGCTCTAACAGACTCTT 600
consensus_5867#1      TGAGCTCTATGAGATAAAATGGAGGCAATATGAGGAAGAAAAGAGCTTTAACGGGGTCTT 80
                      * ****** * ** ******  ** ****** * *** **** **** **** *  ****

consensus_5867#0      CATCCTCCGGCTGGCCAAATGTAGCCAGTGGATTCATCCAGANGGCCAAATTGCTCCTCC 660
consensus_5867#1      CATCCTCGGGGTGGCCAAAGGTAGCCAGTGGATTCATCCAGAGGGCCAAATTGCTCCTCG 140
                      ******* ** ******** ********************** **************** 

consensus_5867#0      GGCTGGCCAAATGTAGCCAGTCTCTCCACTGGCTAAAGGTGGGTCCCACTACCACTCTTA 720
consensus_5867#1      GGCGGGCCAAATGTAGCCAGTCTCTCCAGTGGATAAAGGTGGGTCCCACTACCACTCTTA 200
                      *** ************************ *** ***************************

consensus_5867#0      GCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCANGAAGNCGCAGCGCGCCCAGTCC 780
consensus_5867#1      GCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCAG-AGCGCGCAGCGCGCCCAGTCC 259
                      *************************************  *   *****************

consensus_5867#0      GGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCACCCTGAGGCGCGCGG 840
consensus_5867#1      GGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCAACAGGAGGCGCGC-- 317
                      ********************************************* *  *********  

consensus_5867#0      AGAGCAGCTGCACGAGGAGGCCCATGGCCATGGTCCAGAGGAGGAGCCAGAGCAGCGCAT 900
consensus_5867#1      ------------------------------------------------------------
                                                                                  

consensus_5867#0      C 901
consensus_5867#1      -