These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 901 fasta sequence [CCCTCATCTCCCAGCCGACGATGAGCATCGAGGGCTCGGAGGGCCGGCGGCGGCGCAGGAGCTCGGTCGGCACGGCATCCTCCCGAGCGGCGAGCGGNCATCCGGCCTCCGCGCCGCCCCCTTCCTCCTTCAGCCTTCGTGCGCTCAAGGAAATCGGCGCGACCTTGGTAGGCGGCAGGATCCGGCGAGGAGTGGCTGCGCGTCGGCAGGCGTCGGCGTCGGTCAGCACCATCCTCCCCTGCCGCTCGGCTGCCTCGCCCCTCTTCCCTCTCCCCTCTCCCCTCTCTCATCTAGCGGCAGTGTGGGTCCCATCTGTGGACCCGCTGAGACGAAGAACGCGTANCAAAGTTGGCTACGCGGAGATGAGGCGCGCGCGTGGCTAGCTAACGTGGGCAAAAGAATATTCGCTTTTTTGGTTGAGGCTGAATACCACCTAGACCCATTGTGAATGGCCTAAGACCGATGGAGGCAACATTGCTACCGAA-GATGGAAGTGGCTTGTGTTATCATCTCCTTAGAGCATCTCCAAGAGACTCTTTATTCAGCTCTCTAAGTTAAAATTTAGCCAATATAAAGAAAAAAAAAGCTCTAACAGACTCTTCATCCTCCGGCTGGCCAAATGTAGCCAGTGGATTCATCCAGANGGCCAAATTGCTCCTCCGGCTGGCCAAATGTAGCCAGTCTCTCCACTGGCTAAAGGTGGGTCCCACTACCACTCTTAGCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCANGAAGNCGCAGCGCGCCCAGTCCGGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCACCCTGAGGCGCGCGGAGAGCAGCTGCACGAGGAGGCCCATGGCCATGGTCCAGAGGAGGAGCCAGAGCAGCGCATC] [+] EMBL AU070757 [CCCTCATCTCCCAGCCGACGATGAGCATCGAGGGCTCGGAGGGCCGGCGGCGGCGCAGGAGCTCGGTCGGCACGGCATCCTCCCGAGCGGCGAGCGGNCATCCGGCCTCCGCGCCGCCCCCTTCCTCCTTCAGCCTTCGTGCGCTCAAGGAAATCGGCGCGACCTTGGTAGGCGGCAGGATCCGGCGAGGAGTGGCTGCGCGTCGGCAGGCGTCGGCGTCGGTCAGCACCATCCTCCCCTGCCGCTCGGCTGCCTCGCCCCTCTTCCCTCTCCCCTCTCCCCTCTCTCATCTAGCGGCAGTGTGGGTCCCATCTGTGGACCCGCTGAGACGAAGAACGCGTANCAAAGTTGGCTACGCGGAGATGAGGCGCGCGCGTGGCTAGCTAACGTGGGCAAAAGAATATTCGCTTTTTTGGTTGAGGCTGAATACCACCTAGACCCATTGTGAATGGCCTAAGACCGATGGAGGCAACATTGCTACCGAA GATGGAAGTGGCTTGTGTTATCATCTCCTTAGAGCATCTCCAAGAGACTCTTTATTCAGCTCTCTAAGTTAAAATTTAGCCAATATAAAGAAAAAAAAAGCTCTAACAGACTCTTCATCCTCCGGCTGGCCAAATGTAGCCAGTGGATTCATCCAGANGGCCAAATTGCTCCTCCGGCTGGCCAAATGTAGCCAGTCTCTCCACTGGC ] [+] EMBL AU082423 [ TGTGAATGGCCTAAGACCGATGGAGGCAACATTGCTACCGAAGGATGGAAGTGGCTTGTGTTATCATCTCCTTAGAGCATCTCCAAGAGACTCTTTATTCAGCTCTCTAAGTTAAAATTTAGCCAATATAAAGAAAAAAAAAGCTCTAACAGACTCTTCATCCTCCGGCTGGCCAAATGTAGCCAGTGGATTCATCCAGAGGGCCAAATTGCTCCTCCGGCTGGCCAAATGTAGCCAGTCTCTCCACTGGCTAAAGGTGGGTCCCACTACCACTCTTAGCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCANGAAGNCGCAGCGCGCCCAGTCCGGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCACCCTGAGGCGCGCGGAGAGCAGCTGCACGAGGAGGCCCATGGCCATGGTCCAGAGGAGGAGCCAGAGCAGCGCATC] consensusID : consensus_5867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [ATGTCCAAGAGACTGTATGATGAGCTCTATGAGATAAAATGGAGGCAATATGAGGAAGAAAAGAGCTTTAACGGGGTCTTCATCCTCGGGGTGGCCAAAGGTAGCCAGTGGATTCATCCAGAGGGCCAAATTGCTCCTCGGGCGGGCCAAATGTAGCCAGTCTCTCCAGTGGATAAAGGTGGGTCCCACTACCACTCTTAGCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCAGAGCGCGCAGCGCGCCCAGTCCGGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCAACAGGAGGCGCGC] [-] EMBL CB662389 [ATGTCCAAGAGACTGTATGATGAGCTCTATGAGATAAAATGGAGGCAATATGAGGAAGAAAAGAGCTTTAACGGGGTCTTCATCCTCGGGGTGGCCAAAGGTAGCCAGTGGATTCATCCAGAGGGCCAAATTGCTCCTCGGGCGGGCCAAATGTAGCCAGTCTCTCCAGTGGATAAAGGTGGGTCCCACTACCACTCTTAGCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCAGAGCGCGCAGCGCGCCCAGTCCGGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCAACAGGAGGCGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5867#0 CCCTCATCTCCCAGCCGACGATGAGCATCGAGGGCTCGGAGGGCCGGCGGCGGCGCAGGA 60 consensus_5867#1 ------------------------------------------------------------ consensus_5867#0 GCTCGGTCGGCACGGCATCCTCCCGAGCGGCGAGCGGNCATCCGGCCTCCGCGCCGCCCC 120 consensus_5867#1 ------------------------------------------------------------ consensus_5867#0 CTTCCTCCTTCAGCCTTCGTGCGCTCAAGGAAATCGGCGCGACCTTGGTAGGCGGCAGGA 180 consensus_5867#1 ------------------------------------------------------------ consensus_5867#0 TCCGGCGAGGAGTGGCTGCGCGTCGGCAGGCGTCGGCGTCGGTCAGCACCATCCTCCCCT 240 consensus_5867#1 ------------------------------------------------------------ consensus_5867#0 GCCGCTCGGCTGCCTCGCCCCTCTTCCCTCTCCCCTCTCCCCTCTCTCATCTAGCGGCAG 300 consensus_5867#1 ------------------------------------------------------------ consensus_5867#0 TGTGGGTCCCATCTGTGGACCCGCTGAGACGAAGAACGCGTANCAAAGTTGGCTACGCGG 360 consensus_5867#1 ------------------------------------------------------------ consensus_5867#0 AGATGAGGCGCGCGCGTGGCTAGCTAACGTGGGCAAAAGAATATTCGCTTTTTTGGTTGA 420 consensus_5867#1 ------------------------------------------------------------ consensus_5867#0 GGCTGAATACCACCTAGACCCATTGTGAATGGCCTAAGACCGATGGAGGCAACATTGCTA 480 consensus_5867#1 ------------------------------------------------------------ consensus_5867#0 CCGAAGATGGAAGTGGCTTGTGTTATCATCTCCTTAGAGCATCTCCAAGAGACTCTTTAT 540 consensus_5867#1 ----------------------------------------ATGTCCAAGAGACTGTATGA 20 ** *********** * * consensus_5867#0 TCAGCTCTCTAAGTTAAAATTTAGCCAATATAAAGAAAAAAAAAGCTCTAACAGACTCTT 600 consensus_5867#1 TGAGCTCTATGAGATAAAATGGAGGCAATATGAGGAAGAAAAGAGCTTTAACGGGGTCTT 80 * ****** * ** ****** ** ****** * *** **** **** **** * **** consensus_5867#0 CATCCTCCGGCTGGCCAAATGTAGCCAGTGGATTCATCCAGANGGCCAAATTGCTCCTCC 660 consensus_5867#1 CATCCTCGGGGTGGCCAAAGGTAGCCAGTGGATTCATCCAGAGGGCCAAATTGCTCCTCG 140 ******* ** ******** ********************** **************** consensus_5867#0 GGCTGGCCAAATGTAGCCAGTCTCTCCACTGGCTAAAGGTGGGTCCCACTACCACTCTTA 720 consensus_5867#1 GGCGGGCCAAATGTAGCCAGTCTCTCCAGTGGATAAAGGTGGGTCCCACTACCACTCTTA 200 *** ************************ *** *************************** consensus_5867#0 GCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCANGAAGNCGCAGCGCGCCCAGTCC 780 consensus_5867#1 GCCCCATCCTTCCTCTCTCTCTCCCGTCCGTGAGCCAG-AGCGCGCAGCGCGCCCAGTCC 259 ************************************* * ***************** consensus_5867#0 GGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCACCCTGAGGCGCGCGG 840 consensus_5867#1 GGGTACTCGTCGCGGAGAGCTCGGCGACGTGCCTCCCAGTGGCCAACAGGAGGCGCGC-- 317 ********************************************* * ********* consensus_5867#0 AGAGCAGCTGCACGAGGAGGCCCATGGCCATGGTCCAGAGGAGGAGCCAGAGCAGCGCAT 900 consensus_5867#1 ------------------------------------------------------------ consensus_5867#0 C 901 consensus_5867#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||