These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 472 fasta sequence [TCATCTTCAGTTGCTTGAGCTTAATTACAGACTGAGAGAAGATGTCTTGCAGCTGTGGATCTAGCTGCAGCTGCGGCTCAAACTGCTCCTGCGGAAAGAAGTACCCTGACCTGGAAGAGAAGAGCAGCAGCACCAAGGCCACCGTCGTGCTGGGTGTGGCGCCGGAGAAGAAGGCGCAGCAGTTTGAGGCGGCCGCAGAGTCCGGCGAGACCGCCCATGGCTGCAGCTGCGGTTCCAGCTGCAGGTGCAACCCTTGCAACTGTTAAGATGCCTGCCTGCATCTACCATCTATGTGAATTGTGATGCAGAAAAATAAAGAAGCTTGGCCATTTGGGTTGGTGCTTGACCAATATATATGGTGTGTGTGTGTGTGTGTGATGGGTTAATCGATGTGCTATGTTATTGGTTTCACTATTCACGTACTATGCTTGTAATGGTGTATCCACAGATGAAGTGATGAATATATTAAACT] [+] EMBL OSU43529 [TCATCTTCAGTTGCTTGAGCTTAATTACAGACTGAGAGAAGATGTCTTGCAGCTGTGGATCTAGCTGCAGCTGCGGCTCAAACTGCTCCTGCGGAAAGAAGTACCCTGACCTGGAAGAGAAGAGCAGCAGCACCAAGGCCACCGTCGTGCTGGGTGTGGCGCCGGAGAAGAAGGCGCAGCAGTTTGAGGCGGCCGCAGAGTCCGGCGAGACCGCCCATGGCTGCAGCTGCGGTTCCAGCTGCAGGTGCAACCCTTGCAACTGTTAAGATGCCTGCCTGCATCTACCATCTATGTGAATTGTGATGCAGAAAAATAAAGAAGCTTGGCCATTTGGGTTGGTGCTTGACCAATATATATGGTGTGTGTGTGTGTGTGTGATGGGTTAATCGATGTGCTATGTTATTGGTTTCACTATTCACGTACTATGCTTGTAATGGTGTATCCACAGATGAAGTGATGAATATATTAAACT] [-] EMBL D42585 [ nAGCTGCNGTTCCAGCTGCAGGTGCAACCCTTGCAACTGTTAAGATGCCTGCCTGCATCTACCATCTATGTGAANTGTGATGCAGAAAAATAAAGAAGCTTGGCCATTTGGGTTGGTGCTTGACCAATATATATGGTGTGTGTGTGTGTGTGTGATGGGTTAATCGATGTGCTATGTTATTGGTTTCACTATTCACGTACTATGCTTGTAATGGTGTATCCACAGATGAAGTGATGAATATATTAAACT] consensusID : consensus_5868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [CGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCTCAAGACCTCGGCCGCGACCACGTCGAGCGGCCGCCCGGCAGGTACCAACTTCGAAGTAAAGCCAACAATTTGGTAACAAATAATAATACGATGACATTTCTAATTCACAGCCAGAAACCTCATAATAAAACTTAGAACTGACCAGAATATATCTCCATGTGTCGCTGCAGCAGACGTGGCACAGTAAAATGTTCAATACTTCAAACCTTCACCAAATTTACTAGGCCTTGGCTATGAAG] [+] EMBL CD645584 [CGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCTCAAGACCTCGGCCGCGACCACGTCGAGCGGCCGCCCGGCAGGTACCAACTTCGAAGTAAAGCCAACAATTTGGTAACAAATAATAATACGATGACATTTCTAATTCACAGCCAGAAACCTCATAATAAAACTTAGAACTGACCAGAATATATCTCCATGTGTCGCTGCAGCAGACGTGGCACAGTAAAATGTTCAATACTTCAAACCTTCACCAAATTTACTAGGCCTTGGCTATGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5868#0 TCATCTTCAGTTGCTTGAGCTTAATTACAGACTGAGAGAAGATGTCTTGCAGCTGTGGAT 60 consensus_5868#1 -----------------------------------------------CGCAGGAGCAGTT 13 **** * * * consensus_5868#0 CTAGCTGCAGCTGCGGCTCAAACTGCTCCTGCGGAAAGAAGTACCCTGACCTGGAAGAGA 120 consensus_5868#1 TGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAA 73 *** ******** *** * * * **** * * * *** ** * consensus_5868#0 AGAGCAGCAGCACCAAGGCCACCGTCGTGCTGGGTGTGGCGCCGGAGAAGAAGGCGCAGC 180 consensus_5868#1 G----CTCAAGACCTCGGCCGCGACCACGTCGAGCG-GCCGCCCGGCAGGTACCAACTTC 128 ** *** **** * * * * * * * **** * * * * * * consensus_5868#0 AGTTTGAGGCGGCCGCAGAGTCCGGCGAGACCGCCCATGGCTGCAGCTGCGGTTCCAGCT 240 consensus_5868#1 GAAGTAAAGCCAAC----AATTTGGTAA---CAAATAATAATACGATGACATTTCTAATT 181 * * ** * * * ** * * * * * * *** * * consensus_5868#0 -GCAGGTGCAACCCTTGCAACTG--TTAAGATGCCTGCCTGCATCTACCATCTATGTGAA 297 consensus_5868#1 CACAGCCAGAAACCTCATAATAAAACTTAGA-ACTGACCAGAATATATC-TCCATGTGT- 238 *** ** *** ** * *** * ** * ** ** * ** ***** consensus_5868#0 TTGTGATGCAGAAA-AATAAAGAAGCTTGGCCATTTGGGTTGGTGCTTGACCAATATATA 356 consensus_5868#1 CGCTGCAGCAGACGTGGCACAGTAAAATGTTCAAT-ACTTCAAACCTTCACCAAATTTAC 297 ** ***** * ** * ** ** * * *** ***** * consensus_5868#0 TGGTGTGTGTGTGTGTGTGTGATGGGTTAATCGATGTGCTATGTTATTGGTTTCACTATT 416 consensus_5868#1 TAGGCCTTGGCTATGAAG------------------------------------------ 315 * * ** * ** consensus_5868#0 CACGTACTATGCTTGTAATGGTGTATCCACAGATGAAGTGATGAATATATTAAACT 472 consensus_5868#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||