These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1474 fasta sequence [ATCGAACACCTTGCGATCACCCTCTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGTTTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCTCGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGATGGCCGATCACCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGACACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGAGTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACATGGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGATGATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCACCCTCGTCAAGCAAGTGGCGACGACGTCAGCACCTTCCGTTCGACAGCCGGCGAGAACGACACCACCTTTGGTCATATGTGTGCCGTGATGAGGGGAATGGACAGGATGCACTCGGATCTGCGCAAGGCATCCAGGGCCTTGAATGACGGGAAGCTCGTGAGGATCATAGCTCTGAAGGATGAGATCGCACGCCTGAAGAAGGATGAGATCGCACGCCTAAAGAAGGAGAATGCTCAGTTGAAGAATCCGCAACACGCCCCGCAAGTCGACGACGGCACCCGTGCGCATTCAGCTTGCGCCCAGGAACCCACCTCCGCCCGCAGTTCCCGCAGCTCCTGCAGCTCCAGCTCCAGTCCCAGCTCCTGTCCCAGTGACAGCTCCCGCGTCCGCTCTCTCCTTCGCTCCAGCATTAGCCGCCAGGGGTCCAGCCAGTGGCAACGGGGGTTGGTTGCCTGCTACTCCCAGTGGCAGCCGCGACCACAGCAGCAGCAGTTCCAGTGGCTCGGAGCCGGGCAGCGGCGAGATGTATCTGCCAAACTCCAGGAGCCGCTCAGAGGGACGTGGTGACGAGCAGGAGGACGCCCTCGACTCCACCGACCGCAGGAGCCGTTCCGAGTATTAGGCTCGCTTTCCCTTAGTTTATCGACTGCTTAGTTTTTGTCTGCTAGTTTGTGTGTTTAGGTCTGTTCGCTTGGGGGTCAGTCGATGGTCAATATCATGTGCCTATGATATGGCTGTCATAATAAGGATTTGCCTGCTGTTTTAAGTATTTTAATTCAGATCAGAACAATTGCAGTTTAAATTCCTATATAATAAAGCTTA] [+] EMBL AK106483 [ATCGAACACCTTGCGATCACCCTCTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGTTTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCTCGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGATGGCCGATCACCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGACACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGAGTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACATGGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGATGATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCACCCTCGTCAAGCAAGTGGCGACGACGTCAGCACCTTCCGTTCGACAGCCGGCGAGAACGACACCACCTTTGGTCATATGTGTGCCGTGATGAGGGGAATGGACAGGATGCACTCGGATCTGCGCAAGGCATCCAGGGCCTTGAATGACGGGAAGCTCGTGAGGATCATAGCTCTGAAGGATGAGATCGCACGCCTGAAGAAGGATGAGATCGCACGCCTAAAGAAGGAGAATGCTCAGTTGAAGAATCCGCAACACGCCCCGCAAGTCGACGACGGCACCCGTGCGCATTCAGCTTGCGCCCAGGAACCCACCTCCGCCCGCAGTTCCCGCAGCTCCTGCAGCTCCAGCTCCAGTCCCAGCTCCTGTCCCAGTGACAGCTCCCGCGTCCGCTCTCTCCTTCGCTCCAGCATTAGCCGCCAGGGGTCCAGCCAGTGGCAACGGGGGTTGGTTGCCTGCTACTCCCAGTGGCAGCCGCGACCACAGCAGCAGCAGTTCCAGTGGCTCGGAGCCGGGCAGCGGCGAGATGTATCTGCCAAACTCCAGGAGCCGCTCAGAGGGACGTGGTGACGAGCAGGAGGACGCCCTCGACTCCACCGACCGCAGGAGCCGTTCCGAGTATTAGGCTCGCTTTCCCTTAGTTTATCGACTGCTTAGTTTTTGTCTGCTAGTTTGTGTGTTTAGGTCTGTTCGCTTGGGGGTCAGTCGATGGTCAATATCATGTGCCTATGATATGGCTGTCATAATAAGGATTTGCCTGCTGTTTTAAGTATTTTAATTCAGATCAGAACAATTGCAGTTTAAATTCCTATATAATAAAGCTTA] [-] EMBL CB658395 [ CCGTGATGAGGGGAATGGACAGGATGCACTCGGATCTGCGCAAGGCATCCAGGGCCTTGAATGACGGGAAGCTCGTGAGGATCATAGCTCTGAAGGATGAGATCGCACGCCTGAAGAAGGATGAGATCGCACGCCTAAAGAAGGAGAATGCTCAGTTGAAGAATCCGCAACACGCCCCGCAAGTCGACGACGGCACCCGTGCGCATTCAGCTTGCGCCCAGGAACCCACCTCCGCCCGCAGTTCCCGCAGCTCCTGCAGCTCCAGCTCCAGTCCCAGCTCCTGTCCCAGTGTCAGCTCCCGCGTCCGCTCTCTCCTTCGCTCCAGCATTAGCCGCCAGGGGTCCAGCCAGTGGCAACGGGGGTTGGTTGCCTGCTACTCCCAGTGGCAGCCGCGACCACAGCAGCAGCAGTTCCAGTGGCTCGGAGCCGGGCAGCGGCGAGATGTATCTGCCAAACTCCAGGAGCCGCTCAGAGGGACGTGGTGACGAGCAGGAGGACGCCCTCGACTCCACCGACCGCAGGAGCCGTTCCGAGTATTAGGCTCGCTTTCCCTTAGTTTATCGACTGCTTAGTTTTTGTCTGCTAGTTTGTGTGTTTAGGTCTGTTCGCTTGGGGGTCAGTCGATGGTCAATATCATGTGCCTATGATATGGCTGTCATAATAAGGA TAGGGTGCTGTTTTAAGTTTT ] consensusID : consensus_5886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [CTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGTTTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCTCGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGATTTCGGCTCTCCCGACGCTCTGGTGTACCTTGAAATAGTCGCCGAAGTTCCTTCAGCTGCAGAGCAAGATGGCCGATCACCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGACACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGAGTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACATGGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGATGATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCACCCTCGTCAAGCAAGTGGCGACGACCTCAGCACCTTCCGTTCGACAGCCGGCCGAGAACGACACCCACCTTTGG] [+] EMBL CB658394 [CTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGTTTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCTCGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGATTTCGGCTCTCCCGACGCTCTGGTGTACCTTGAAATAGTCGCCGAAGTTCCTTCAGCTGCAGAGCAAGATGGCCGATCACCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGACACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGAGTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACATGGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGATGATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCACCCTCGTCAAGCAAGTGGCGACGACCTCAGCACCTTCCGTTCGACAGCCGGCCGAGAACGACACCCACCTTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5886#0 ATCGAACACCTTGCGATCACCCTCTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCC 60 consensus_5886#1 -----------------------CTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCC 37 ************************************* consensus_5886#0 GGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGG 120 consensus_5886#1 GGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGG 97 ************************************************************ consensus_5886#0 GGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGT 180 consensus_5886#1 GGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGT 157 ************************************************************ consensus_5886#0 TTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCT 240 consensus_5886#1 TTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCT 217 ************************************************************ consensus_5886#0 CGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGT 300 consensus_5886#1 CGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGT 277 ************************************************************ consensus_5886#0 TGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGAT------------------ 342 consensus_5886#1 TGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGATTTCGGCTCTCCCGACGCT 337 ****************************************** consensus_5886#0 ---------------------------------------------------GGCCGATCA 351 consensus_5886#1 CTGGTGTACCTTGAAATAGTCGCCGAAGTTCCTTCAGCTGCAGAGCAAGATGGCCGATCA 397 ********* consensus_5886#0 CCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGAC 411 consensus_5886#1 CCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGAC 457 ************************************************************ consensus_5886#0 ACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGA 471 consensus_5886#1 ACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGA 517 ************************************************************ consensus_5886#0 GTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACAT 531 consensus_5886#1 GTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACAT 577 ************************************************************ consensus_5886#0 GGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGAT 591 consensus_5886#1 GGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGAT 637 ************************************************************ consensus_5886#0 GATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCA 651 consensus_5886#1 GATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCA 697 ************************************************************ consensus_5886#0 CCCTCGTCAAGCAAGTGGCGACGACGTCAGCACCTTCCGTTCGACAGCCGGC-GAGAACG 710 consensus_5886#1 CCCTCGTCAAGCAAGTGGCGACGACCTCAGCACCTTCCGTTCGACAGCCGGCCGAGAACG 757 ************************* ************************** ******* consensus_5886#0 ACACC-ACCTTTGGTCATATGTGTGCCGTGATGAGGGGAATGGACAGGATGCACTCGGAT 769 consensus_5886#1 ACACCCACCTTTGG---------------------------------------------- 771 ***** ******** consensus_5886#0 CTGCGCAAGGCATCCAGGGCCTTGAATGACGGGAAGCTCGTGAGGATCATAGCTCTGAAG 829 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 GATGAGATCGCACGCCTGAAGAAGGATGAGATCGCACGCCTAAAGAAGGAGAATGCTCAG 889 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 TTGAAGAATCCGCAACACGCCCCGCAAGTCGACGACGGCACCCGTGCGCATTCAGCTTGC 949 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 GCCCAGGAACCCACCTCCGCCCGCAGTTCCCGCAGCTCCTGCAGCTCCAGCTCCAGTCCC 1009 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 AGCTCCTGTCCCAGTGACAGCTCCCGCGTCCGCTCTCTCCTTCGCTCCAGCATTAGCCGC 1069 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 CAGGGGTCCAGCCAGTGGCAACGGGGGTTGGTTGCCTGCTACTCCCAGTGGCAGCCGCGA 1129 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 CCACAGCAGCAGCAGTTCCAGTGGCTCGGAGCCGGGCAGCGGCGAGATGTATCTGCCAAA 1189 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 CTCCAGGAGCCGCTCAGAGGGACGTGGTGACGAGCAGGAGGACGCCCTCGACTCCACCGA 1249 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 CCGCAGGAGCCGTTCCGAGTATTAGGCTCGCTTTCCCTTAGTTTATCGACTGCTTAGTTT 1309 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 TTGTCTGCTAGTTTGTGTGTTTAGGTCTGTTCGCTTGGGGGTCAGTCGATGGTCAATATC 1369 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 ATGTGCCTATGATATGGCTGTCATAATAAGGATTTGCCTGCTGTTTTAAGTATTTTAATT 1429 consensus_5886#1 ------------------------------------------------------------ consensus_5886#0 CAGATCAGAACAATTGCAGTTTAAATTCCTATATAATAAAGCTTA 1474 consensus_5886#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||