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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1602 fasta sequence
[TGCGTGCGTGCGCGTGTGAGCGAGAAGGAGAGAGAGAGATGGTGGTGGTGGTGGCCATGCCGCCGGCGCTCTCCCTCCTCGTTCTCCTCGTTCTCGCGCTCCACGGAGGCGTTTGTTACGCCACACCGCCGCCGCCGCTGCGGCTCGTCCGCGGCGCGCGGCGCGTGGCGTTCGACGAGGGGTACACGCGGATGTTCGGCGACGGCAACCTCGCCGTCCTCCGCGACGGCCGCCGCGTCCGCCTCACCCTCGACGAGTCCACCGGTGAGTGAGCCGCCCACCGCCGCCTCCCCACGGCCCGTCCATGCGATTTCTTCACAATCCGAGGACCGCATTGCACTTTTTAAATTACGTATCGGTCCTTCCCGCAAGCAGTGAGAGGGTGTTTATGTGATATCGCTAACTTGAGGGTGTTCTTGGCAAAACTGCCACTTCTTCCTCCTCGCGCTACGCAGGCGCCGGGTTCGCCTCCCAGGACGTCTTCCTCCACGGCTTCTTCAGCGCCGCCGTCAAGCTCCCCGCCTACTACGCCGCCGGCGTCGTCGTCGCCTTCTACCTGTCGAACGGCGACACGTACGAGAAGACCCACGACGAGGTGGACTTCGAGTTCCTCGGCAACGTGCGCGGGCGCCGAGTGGCGCGTGCAGACGAACGTGTACGGCAATGGCAGCACCGCCGCCGGCAGGGAGGAGCGCTACGACCTCCCGTTCGACCCCACCGACGAGCTCCACCATTACTCCATCCTCTGGACTCGCCGCCGAATCATGTCAGCCATTTCAAAAACATTTCAAAGAAGAGTAGATTTGGGTTGGAATATTTTGAAAATTTTGAGGGGGGAATTTTTGTTAGATTCTACGTGGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGGCGATGGGGGCGGCGTTCCCGGCGAAGCCGATGTCGGTGTACGCCACAATCTGGGACGGCTCGGCGTGGGCCACGCTCGGCGGGCGCTACAGGGTGAACTACAGGTACGCGCCGTTCGTCGCCGAGTTCGCCGACCTCGTCCTCCACGGCTGCGCCGTCGACCCGCTCGCCGTCGAACACTCCGCGTCGTGCGGGGACGAGGAGGAGGAGGCGGCCGAGGCCGTCGTGTCGTCCGCGGCGATGGCGGCGTTCCGGCGCGGCCACATGTCCTACTCCTACTGCCACGACCGGCGGAGGTACCCGGTCGCGCTGTCCGAGTGCGCGCTCACCGGCGGCGCAGCCTCCCTCGGCCGCCTGTTCGGCCCCGACGGGATGAAGCGCCGCCGCGCTCGCCGCGCCCGCGACGCCTCGTCGTAGCGCCGGCCGCGGGGGCGCTGTACAGTAAGCATCAGCAGTGGGAACGCGTCGAGGCGCCGCTCGCCGCTCGCCGCCGTGGCAGACAGGCGTACTCGCCGGCGTGATTGTGCGCGCGCCGTGGAATCCGGCCGGGATGTATGCCATAGTCACGACTCGCCTTGTAACTTTAGCTATAGCATTAGGATTATTTGCCGCTTTGGACCATTCATCCGTGTGCTCCATTGATGAAACCAAGAAAACTCCATTTCTTATCTCAGGGAAAGGAACGGATTATTATCCATCAATTAATC]
[+] EMBL AK122079 [TGCGTGCGTGCGCGTGTGAGCGAGAAGGAGAGAGAGAGATGGTGGTGGTGGTGGCCATGCCGCCGGCGCTCTCCCTCCTCGTTCTCCTCGTTCTCGCGCTCCACGGAGGCGTTTGTTACGCCACACCGCCGCCGCCGCTGCGGCTCGTCCGCGGCGCGCGGCGCGTGGCGTTCGACGAGGGGTACACGCGGATGTTCGGCGACGGCAACCTCGCCGTCCTCCGCGACGGCCGCCGCGTCCGCCTCACCCTCGACGAGTCCACCGGTGAGTGAGCCGCCCACCGCCGCCTCCCCACGGCCCGTCCATGCGATTTCTTCACAATCCGAGGACCGCATTGCACTTTTTAAATTACGTATCGGTCCTTCCCGCAAGCAGTGAGAGGGTGTTTATGTGATATCGCTAACTTGAGGGTGTTCTTGGCAAAACTGCCACTTCTTCCTCCTCGCGCTACGCAGGCGCCGGGTTCGCCTCCCAGGACGTCTTCCTCCACGGCTTCTTCAGCGCCGCCGTCAAGCTCCCCGCCTACTACGCCGCCGGCGTCGTCGTCGCCTTCTACCTGTCGAACGGCGACACGTACGAGAAGACCCACGACGAGGTGGACTTCGAGTTCCTCGGCAACGTGCGCGGGCGCCGAGTGGCGCGTGCAGACGAACGTGTACGGCAATGGCAGCACCGCCGCCGGCAGGGAGGAGCGCTACGACCTCCCGTTCGACCCCACCGACGAGCTCCACCATTACTCCATCCTCTGGACTCGCCGCCGAATCATGTCAGCCATTTCAAAAACATTTCAAAGAAGAGTAGATTTGGGTTGGAATATTTTGAAAATTTTGAGGGGGGAATTTTTGTTAGATTCTACGTGGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGGCGATGGGGGCGGCGTTCCCGGCGAAGCCGATGTCGGTGTACGCCACAATCTGGGACGGCTCGGCGTGGGCCACGCTCGGCGGGCGCTACAGGGTGAACTACAGGTACGCGCCGTTCGTCGCCGAGTTCGCCGACCTCGTCCTCCACGGCTGCGCCGTCGACCCGCTCGCCGTCGAACACTCCGCGTCGTGCGGGGACGAGGAGGAGGAGGCGGCCGAGGCCGTCGTGTCGTCCGCGGCGATGGCGGCGTTCCGGCGCGGCCACATGTCCTACTCCTACTGCCACGACCGGCGGAGGTACCCGGTCGCGCTGTCCGAGTGCGCGCTCACCGGCGGCGCAGCCTCCCTCGGCCGCCTGTTCGGCCCCGACGGGATGAAGCGCCGCCGCGCTCGCCGCGCCCGCGACGCCTCGTCGTAGCGCCGGCCGCGGGGGCGCTGTACAGTAAGCATCAGCAGTGGGAACGCGTCGAGGCGCCGCTCGCCGCTCGCCGCCGTGGCAGACAGGCGTACTCGCCGGCGTGATTGTGCGCGCGCCGTGGAATCCGGCCGGGATGTATGCCATAGTCACGACTCGCCTTGTAACTTTAGCTATAGCATTAGGATTATTTGCCGCTTTGGACCATTCATCCGTGTGCTCCATTGATGAAACCAAGAAAACTCCATTTCTTATCTCAGGGAAAGGAACGGATTATTATCCATCAATTAATC]
consensusID : consensus_589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1438 fasta sequence
[GCGTGCGTGCGCGTGTGAGCGAGAAGGAGAGAGAGAGATGGTGGTGGTGGTGGCCATGCCGCCGGCGCTCTCCCTCCTCGTTCTCCTCGTTCTCGCGCTCCACGGAGGCGCCGGCGACGCCACGCCGCCGCCGCCGCTGCGGCTCGTCCGCGGCGCGCGGCGCGTGGCGTTCGACGAGGGGTACACGCGGATGTTCGGCGACGGCAACCTCGCCGTCCTCCGCGACGGCCGCCGCGTCCGCCTCACCCTCGACGAGTCCACCGGCGCCGGGTTCGCCTCCCAGGACGTCTTCCTCCACGGCTTCTTCAGCGCCGCCGTCAAGCTCCCCGCCTACTACGCCGCCGGCGTCGTCGTCGCCTTCTACCTGTCGAACGGCGACACGTACGAGAAGACCCACGACGAGGTGGACTTCGAGTTCCTCGGCAACGTGCGCGGGCGCGAGTGGCGCGTGCAGACGAACGTGTACGGCAATGGCAGCACCGCCGCCGGCAGGGAGGAGCGCTACGACCTCCCGTTCGACCCCACCGACGAGCTCCACCATTACTCCATCCTCTGGACTCGCCGCCGAATCATGTCAGCCATTTCAAAAACATTTCAAAGAAGAGTAGATTTGGGTTGGAATATTTTGAAAATTTTGAGGGGGGAATTTTTGTTAGATTCTACGTGGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGGCGATGGGGGCGGCGTTCCCGGCGAAGCCGATGTCGGTGTACGCCACAATCTGGGACGGCTCGGCGTGGGCCACGCTCGGCGGGCGCTACAGGGTGAACTACAGGTACGCGCCGTTCGTCGCCGAGTTCGCCGACCTCGTCCTCCACGGCTGCGCCGTCGACCCGCTCGCCGTCGAACACTCCGCGTCGTGCGGGGACGAGGAGGAGGAGGCGGCCGAGGCCGTCGTGTCGTCCGCGGCGATGGCGGCGTTCCGGCGCGGCCACATGTCCTACTCCTACTGCCACGACCGGCGGAGGTACCCGGTCGCGCTGTCCGAGTGCGCGCTCACCGGCGGCGCAGCCTCCCTCGGCCGCCTGTTCGGCCCCGACGGGATGAAGCGCCGCCGCGCTCGCCGCGCCCGCGACGCCTCGTCGTAGCGCCGGCCGCGGGGGCGCTGTACAGTAAGCATCAGCAGTGGGAACGCGTCGAGGCGCCGCTCGCCGCTCGCCGCCGTGGCAGACAGGCGTACTCGCCGGCGTGATTGTGCGCGCGCCGTGGAATCCGGCCGGGATGTATGCCATTGTCACGGCTCGCCTTGTAACTTTAGCTATAGCATTAGGATTATTTGCCGCTTTGGACCATTCATCCGTGTGCTCCATTGATGAAACCAAGAAAACTCCATTTCTTATCTCAGGGAAAGGAACGGATTATTATCCATCAATTAATCAATTTCAGCTAATCAATCGATCAATTTGA]
[+] EMBL AK060495 [GCGTGCGTGCGCGTGTGAGCGAGAAGGAGAGAGAGAGATGGTGGTGGTGGTGGCCATGCCGCCGGCGCTCTCCCTCCTCGTTCTCCTCGTTCTCGCGCTCCACGGAGGCGCCGGCGACGCCACGCCGCCGCCGCCGCTGCGGCTCGTCCGCGGCGCGCGGCGCGTGGCGTTCGACGAGGGGTACACGCGGATGTTCGGCGACGGCAACCTCGCCGTCCTCCGCGACGGCCGCCGCGTCCGCCTCACCCTCGACGAGTCCACCGGCGCCGGGTTCGCCTCCCAGGACGTCTTCCTCCACGGCTTCTTCAGCGCCGCCGTCAAGCTCCCCGCCTACTACGCCGCCGGCGTCGTCGTCGCCTTCTACCTGTCGAACGGCGACACGTACGAGAAGACCCACGACGAGGTGGACTTCGAGTTCCTCGGCAACGTGCGCGGGCGCGAGTGGCGCGTGCAGACGAACGTGTACGGCAATGGCAGCACCGCCGCCGGCAGGGAGGAGCGCTACGACCTCCCGTTCGACCCCACCGACGAGCTCCACCATTACTCCATCCTCTGGACTCGCCGCCGAATCATGTCAGCCATTTCAAAAACATTTCAAAGAAGAGTAGATTTGGGTTGGAATATTTTGAAAATTTTGAGGGGGGAATTTTTGTTAGATTCTACGTGGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGGCGATGGGGGCGGCGTTCCCGGCGAAGCCGATGTCGGTGTACGCCACAATCTGGGACGGCTCGGCGTGGGCCACGCTCGGCGGGCGCTACAGGGTGAACTACAGGTACGCGCCGTTCGTCGCCGAGTTCGCCGACCTCGTCCTCCACGGCTGCGCCGTCGACCCGCTCGCCGTCGAACACTCCGCGTCGTGCGGGGACGAGGAGGAGGAGGCGGCCGAGGCCGTCGTGTCGTCCGCGGCGATGGCGGCGTTCCGGCGCGGCCACATGTCCTACTCCTACTGCCACGACCGGCGGAGGTACCCGGTCGCGCTGTCCGAGTGCGCGCTCACCGGCGGCGCAGCCTCCCTCGGCCGCCTGTTCGGCCCCGACGGGATGAAGCGCCGCCGCGCTCGCCGCGCCCGCGACGCCTCGTCGTAGCGCCGGCCGCGGGGGCGCTGTACAGTAAGCATCAGCAGTGGGAACGCGTCGAGGCGCCGCTCGCCGCTCGCCGCCGTGGCAGACAGGCGTACTCGCCGGCGTGATTGTGCGCGCGCCGTGGAATCCGGCCGGGATGTATGCCATTGTCACGGCTCGCCTTGTAACTTTAGCTATAGCATTAGGATTATTTGCCGCTTTGGACCATTCATCCGTGTGCTCCATTGATGAAACCAAGAAAACTCCATTTCTTATCTCAGGGAAAGGAACGGATTATTATCCATCAATTAATCAATTTCAGCTAATCAATCGATCAATTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_589#0 TGCGTGCGTGCGCGTGTGAGCGAGAAGGAGAGAGAGAGATGGTGGTGGTGGTGGCCATGC 60
consensus_589#1 -GCGTGCGTGCGCGTGTGAGCGAGAAGGAGAGAGAGAGATGGTGGTGGTGGTGGCCATGC 59
***********************************************************
consensus_589#0 CGCCGGCGCTCTCCCTCCTCGTTCTCCTCGTTCTCGCGCTCCACGGAGGCGTTTGTTACG 120
consensus_589#1 CGCCGGCGCTCTCCCTCCTCGTTCTCCTCGTTCTCGCGCTCCACGGAGGCGCCGGCGACG 119
*************************************************** * ***
consensus_589#0 CCACACCGCCGCCGCCGCTGCGGCTCGTCCGCGGCGCGCGGCGCGTGGCGTTCGACGAGG 180
consensus_589#1 CCACGCCGCCGCCGCCGCTGCGGCTCGTCCGCGGCGCGCGGCGCGTGGCGTTCGACGAGG 179
**** *******************************************************
consensus_589#0 GGTACACGCGGATGTTCGGCGACGGCAACCTCGCCGTCCTCCGCGACGGCCGCCGCGTCC 240
consensus_589#1 GGTACACGCGGATGTTCGGCGACGGCAACCTCGCCGTCCTCCGCGACGGCCGCCGCGTCC 239
************************************************************
consensus_589#0 GCCTCACCCTCGACGAGTCCACCGGTGAGTGAGCCGCCCACCGCCGCCTCCCCACGGCCC 300
consensus_589#1 GCCTCACCCTCGACGAGTCCACCGG----------------------------------- 264
*************************
consensus_589#0 GTCCATGCGATTTCTTCACAATCCGAGGACCGCATTGCACTTTTTAAATTACGTATCGGT 360
consensus_589#1 ------------------------------------------------------------
consensus_589#0 CCTTCCCGCAAGCAGTGAGAGGGTGTTTATGTGATATCGCTAACTTGAGGGTGTTCTTGG 420
consensus_589#1 ------------------------------------------------------------
consensus_589#0 CAAAACTGCCACTTCTTCCTCCTCGCGCTACGCAGGCGCCGGGTTCGCCTCCCAGGACGT 480
consensus_589#1 ------------------------------------CGCCGGGTTCGCCTCCCAGGACGT 288
************************
consensus_589#0 CTTCCTCCACGGCTTCTTCAGCGCCGCCGTCAAGCTCCCCGCCTACTACGCCGCCGGCGT 540
consensus_589#1 CTTCCTCCACGGCTTCTTCAGCGCCGCCGTCAAGCTCCCCGCCTACTACGCCGCCGGCGT 348
************************************************************
consensus_589#0 CGTCGTCGCCTTCTACCTGTCGAACGGCGACACGTACGAGAAGACCCACGACGAGGTGGA 600
consensus_589#1 CGTCGTCGCCTTCTACCTGTCGAACGGCGACACGTACGAGAAGACCCACGACGAGGTGGA 408
************************************************************
consensus_589#0 CTTCGAGTTCCTCGGCAACGTGCGCGGGCGCCGAGTGGCGCGTGCAGACGAACGTGTACG 660
consensus_589#1 CTTCGAGTTCCTCGGCAACGTGCGCGGGCGC-GAGTGGCGCGTGCAGACGAACGTGTACG 467
******************************* ****************************
consensus_589#0 GCAATGGCAGCACCGCCGCCGGCAGGGAGGAGCGCTACGACCTCCCGTTCGACCCCACCG 720
consensus_589#1 GCAATGGCAGCACCGCCGCCGGCAGGGAGGAGCGCTACGACCTCCCGTTCGACCCCACCG 527
************************************************************
consensus_589#0 ACGAGCTCCACCATTACTCCATCCTCTGGACTCGCCGCCGAATCATGTCAGCCATTTCAA 780
consensus_589#1 ACGAGCTCCACCATTACTCCATCCTCTGGACTCGCCGCCGAATCATGTCAGCCATTTCAA 587
************************************************************
consensus_589#0 AAACATTTCAAAGAAGAGTAGATTTGGGTTGGAATATTTTGAAAATTTTGAGGGGGGAAT 840
consensus_589#1 AAACATTTCAAAGAAGAGTAGATTTGGGTTGGAATATTTTGAAAATTTTGAGGGGGGAAT 647
************************************************************
consensus_589#0 TTTTGTTAGATTCTACGTGGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGGCGAT 900
consensus_589#1 TTTTGTTAGATTCTACGTGGACGAGACGCCGATCAGGGAGGTGGTGAGGACGGCGGCGAT 707
************************************************************
consensus_589#0 GGGGGCGGCGTTCCCGGCGAAGCCGATGTCGGTGTACGCCACAATCTGGGACGGCTCGGC 960
consensus_589#1 GGGGGCGGCGTTCCCGGCGAAGCCGATGTCGGTGTACGCCACAATCTGGGACGGCTCGGC 767
************************************************************
consensus_589#0 GTGGGCCACGCTCGGCGGGCGCTACAGGGTGAACTACAGGTACGCGCCGTTCGTCGCCGA 1020
consensus_589#1 GTGGGCCACGCTCGGCGGGCGCTACAGGGTGAACTACAGGTACGCGCCGTTCGTCGCCGA 827
************************************************************
consensus_589#0 GTTCGCCGACCTCGTCCTCCACGGCTGCGCCGTCGACCCGCTCGCCGTCGAACACTCCGC 1080
consensus_589#1 GTTCGCCGACCTCGTCCTCCACGGCTGCGCCGTCGACCCGCTCGCCGTCGAACACTCCGC 887
************************************************************
consensus_589#0 GTCGTGCGGGGACGAGGAGGAGGAGGCGGCCGAGGCCGTCGTGTCGTCCGCGGCGATGGC 1140
consensus_589#1 GTCGTGCGGGGACGAGGAGGAGGAGGCGGCCGAGGCCGTCGTGTCGTCCGCGGCGATGGC 947
************************************************************
consensus_589#0 GGCGTTCCGGCGCGGCCACATGTCCTACTCCTACTGCCACGACCGGCGGAGGTACCCGGT 1200
consensus_589#1 GGCGTTCCGGCGCGGCCACATGTCCTACTCCTACTGCCACGACCGGCGGAGGTACCCGGT 1007
************************************************************
consensus_589#0 CGCGCTGTCCGAGTGCGCGCTCACCGGCGGCGCAGCCTCCCTCGGCCGCCTGTTCGGCCC 1260
consensus_589#1 CGCGCTGTCCGAGTGCGCGCTCACCGGCGGCGCAGCCTCCCTCGGCCGCCTGTTCGGCCC 1067
************************************************************
consensus_589#0 CGACGGGATGAAGCGCCGCCGCGCTCGCCGCGCCCGCGACGCCTCGTCGTAGCGCCGGCC 1320
consensus_589#1 CGACGGGATGAAGCGCCGCCGCGCTCGCCGCGCCCGCGACGCCTCGTCGTAGCGCCGGCC 1127
************************************************************
consensus_589#0 GCGGGGGCGCTGTACAGTAAGCATCAGCAGTGGGAACGCGTCGAGGCGCCGCTCGCCGCT 1380
consensus_589#1 GCGGGGGCGCTGTACAGTAAGCATCAGCAGTGGGAACGCGTCGAGGCGCCGCTCGCCGCT 1187
************************************************************
consensus_589#0 CGCCGCCGTGGCAGACAGGCGTACTCGCCGGCGTGATTGTGCGCGCGCCGTGGAATCCGG 1440
consensus_589#1 CGCCGCCGTGGCAGACAGGCGTACTCGCCGGCGTGATTGTGCGCGCGCCGTGGAATCCGG 1247
************************************************************
consensus_589#0 CCGGGATGTATGCCATAGTCACGACTCGCCTTGTAACTTTAGCTATAGCATTAGGATTAT 1500
consensus_589#1 CCGGGATGTATGCCATTGTCACGGCTCGCCTTGTAACTTTAGCTATAGCATTAGGATTAT 1307
**************** ****** ************************************
consensus_589#0 TTGCCGCTTTGGACCATTCATCCGTGTGCTCCATTGATGAAACCAAGAAAACTCCATTTC 1560
consensus_589#1 TTGCCGCTTTGGACCATTCATCCGTGTGCTCCATTGATGAAACCAAGAAAACTCCATTTC 1367
************************************************************
consensus_589#0 TTATCTCAGGGAAAGGAACGGATTATTATCCATCAATTAATC------------------ 1602
consensus_589#1 TTATCTCAGGGAAAGGAACGGATTATTATCCATCAATTAATCAATTTCAGCTAATCAATC 1427
******************************************
consensus_589#0 -----------
consensus_589#1 GATCAATTTGA 1438
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||