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Oryza sativa
cluster # 5892 cluster # 5892       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5892#0 length = 1899 sequences # 3  

consensusID : consensus_5892#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1899
fasta sequence
                              [GCTGGCTGAAGGCTGTGAGAGTGTGAGGTCTAGCTGTGCAATGTGCAGGTGCAGCCATCGCTGCTGCTGCTGCTGCTCTGCTCTTTTCATGTTGACACTTCGCTAAACCCCTCCCAAAACCTCCTCCCCCCCCCCCCCCCCCGATGCGTTCTTGGCCAGGGTCGGGAGCGAGGCGTTCTTGATTTTTTTCTTCTTCTGTTTTTGTTCTTGATTGATTGGATTGGGGAGTGATTCGGTTTGTTCTTGATTTTGATTTTTTGTTGTTGTTGTTGTTGTTTGGGGAGAAAGAGACGAAGGGGAAGCTGTGATTTTCTCTTCCTTTCCACCGAGAGAAAATTTTTTGATCTGTTTGTTGTTTCTTGGAATCGGTTTTGGTTCAAGAACAGGCGCCGCCTTTTGTTCCGGGAAATTCGCTTGTGATCCTCCGAAACCCAGAATTTCTTTTTTCGATCCGTTTTGATCGATTGAAAGCAAATATCATCTTGAAAAGGATCGTTCTTGCTGGTGTTGGTTTGGGGAGGAGGGGGAGGTTTTCCCTCTGACGAGCAAGCAAAGCATTTGGGGCCGCCTGTCGATGACTGAGGGTTTGATCCGATGCTGTCGGGGTGCACGGTGTCCAGTCTCGCGGCGAGGTTCGCCTTCTTCCCGCCGGAGCCGGCGACCTACGCCGTCAGGAAGGATGAGGCGTGCGGCGGCGGAGGGCGGCTGGTGGCGTCGGGCGTCCCGCGGGACGCCGCCGTGGACGTGCTGCTGGTGGACACCAGGAAGGGGAGCAAGGTGGTGGCCTTCTACCTGAGGAACCCCGCCGCCCGCCTCACCGTGCTCTACTCGCACGGCAACGCCGCCGACCTCGGCCAGCTCTACGACCTCTTCGTGCAGCTCAAGGTCAATCTCAAGGTCAATCTGATGGGATATGACTACTCTGGGTATGGAGCATCTACTGGCAAGCCAAGTGAAGAGAATACATATGCAGACATTGAGGCAGTTTACCAGTGCTTAGAAACAGAGTATGGAATCAGTCAGGAAGACCTTATCTTGTATGGACAATCTGTTGGCAGTGGACCTACATTGCATTTAGCTTCCCGTTTACCAAGATTGCGTGGCGTGGTTCTTCATAGCGCTATACTGTCAGGCCTCCGAGTTGTTTGCCATGTGAACTTTACTTTCTGCTTTGACATCTACAAAAATGTGAAGAAAATCAAAAAGGTTAAATCCCCAGTGCTTGTTATTCATGGAACTGATGATGATGTCGTGAACTGGTCGCATGGTAACGAGCTGTGGAAACTGGCGAGGGAGCCTTACGATCCGCTATGGATCAAAGGAGGAGGCCATTGCAACCTGGAGCTGTACCCGGACTTCATCCGCCACCTCTCCAAGTTCATCCGCGAGATGGAGAACATCACAACGAAGACAAGGCTTAAGAAGATCCGGCAGTCCCTGCAACCCGCACCTAAGAAGGTCCACCACCGGGCGAGCACCGGGACGACCACCACCTTCACCACCAACTGCTGCTGCCGCATCCGGGTCCGCAAACCGAGTTGCCGTTGCCCTGGCTGCAACCTAAGCTGCGGCTGCTGCTCTGGTCTGATGAGTTGCTTCTCATCCCGGCTGTTCAAGTGCTCAACCTGCTTCTCCTCCTGCAGCTGCAGGGGATGCTTCAAGTGCCCAACCTGCTTCTCCTTCTCCTGCAGCTGCTGCAGGAGCTGCCTCAAGTGCCCAACCTTCAAATGCTGCTGCTGCGGTTCATGCAGAGATGAGCAATAATGCAAATCTCTATGTGCTTGTGTATAGGAAAAAGAGTGGTTCCGATATATCTGACAAGTTTAATTCTGTAGAAACTAGACCTTGGTTCTCTTAGCTAAACAAACCATAGCAAGATAAAGATGCTTCTCCTTTTCA]

[+] EMBL AK060630             [GCTGGCTGAAGGCTGTGAGAGTGTGAGGTCTAGCTGTGCAATGTGCAGGTGCAGCCATCGCTGCTGCTGCTGCTGCTCTGCTCTTTTCATGTTGACACTTCGCTAAACCCCTCCCAAAACCTCCTCCCCCCCCCCCCCCCCCGATGCGTTCTTGGCCAGGGTCGGGAGCGAGGCGTTCTTGATTTTTTTCTTCTTCTGTTTTTGTTCTTGATTGATTGGATTGGGGAGTGATTCGGTTTGTTCTTGATTTTGATTTTTTGTTGTTGTTGTTGTTGTTTGGGGAGAAAGAGACGAAGGGGAAGCTGTGATTTTCTCTTCCTTTCCACCGAGAGAAAATTTTTTGATCTGTTTGTTGTTTCTTGGAATCGGTTTTGGTTCAAGAACAGGCGCCGCCTTTTGTTCCGGGAAATTCGCTTGTGATCCTCCGAAACCCAGAATTTCTTTTTTCGATCCGTTTTGATCGATTGAAAGCAAATATCATCTTGAAAAGGATCGTTCTTGCTGGTGTTGGTTTGGGGAGGAGGGGGAGGTTTTCCCTCTGACGAGCAAGCAAAGCATTTGGGGCCGCCTGTCGATGACTGAGGGTTTGATCCGATGCTGTCGGGGTGCACGGTGTCCAGTCTCGCGGCGAGGTTCGCCTTCTTCCCGCCGGAGCCGGCGACCTACGCCGTCAGGAAGGATGAGGCGTGCGGCGGCGGAGGGCGGCTGGTGGCGTCGGGCGTCCCGCGGGACGCCGCCGTGGACGTGCTGCTGGTGGACACCAGGAAGGGGAGCAAGGTGGTGGCCTTCTACCTGAGGAACCCCGCCGCCCGCCTCACCGTGCTCTACTCGCACGGCAACGCCGCCGACCTCGGCCAGCTCTACGACCTCTTCGTGCAGCTCAAGGTCAATCTCAAGGTCAATCTGATGGGATATGACTACTCTGGGTATGGAGCATCTACTGGCAAGCCAAGTGAAGAGAATACATATGCAGACATTGAGGCAGTTTACCAGTGCTTAGAAACAGAGTATGGAATCAGTCAGGAAGACCTTATCTTGTATGGACAATCTGTTGGCAGTGGACCTACATTGCATTTAGCTTCCCGTTTACCAAGATTGCGTGGCGTGGTTCTTCATAGCGCTATACTGTCAGGCCTCCGAGTTGTTTGCCATGTGAACTTTACTTTCTGCTTTGACATCTACAAAAATGTGAAGAAAATCAAAAAGGTTAAATCCCCAGTGCTTGTTATTCATGGAACTGATGATGATGTCGTGAACTGGTCGCATGGTAACGAGCTGTGGAAACTGGCGAGGGAGCCTTACGATCCGCTATGGATCAAAGGAGGAGGCCATTGCAACCTGGAGCTGTACCCGGACTTCATCCGCCACCTCTCCAAGTTCATCCGCGAGATGGAGAACATCACAACGAAGACAAGGCTTAAGAAGATCCGGCAGTCCCTGCAACCCGCACCTAAGAAGGTCCACCACCGGGCGAGCACCGGGACGACCACCACCTTCACCACCAACTGCTGCTGCCGCATCCGGGTCCGCAAACCGAGTTGCCGTTGCCCTGGCTGCAACCTAAGCTGCGGCTGCTGCTCTGGTCTGATGAGTTGCTTCTCATCCCGGCTGTTCAAGTGCTCAACCTGCTTCTCCTCCTGCAGCTGCAGGGGATGCTTCAAGTGCCCAACCTGCTTCTCCTTCTCCTGCAGCTGCTGCAGGAGCTGCCTCAAGTGCCCAACCTTCAAATGCTGCTGCTGCGGTTCATGCAGAGATGAGCAATAATGCAAATCTCTATGTGCTTGTGTATAGGAAAAAGAGTGGTTCCGATATATCTGACAAGTTTAATTCTGTAGAAACTAGACCTTGGTTCTCTTAGCTAAACAAACC                              ]
[+] EMBL AA752380             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             cgagCCAAGATTGCGTGGCGTGGTTCTTCATAGCGCTATACTGTCAGGCCTCCGAGTTGTTTGCCATGTGAACTTTACTTTCTGCTTTGACATCTACAAAAATGTGAAGAAAATCAAAAAGGTTAAATCCCCAGTGCTTGTTATTCATGGAACTGATGATGATGTCGTGAACTGGTCGCATGGTAACGAGCTGTGGAAACTGGCGAGGGAGCCTTACGATCCGCTATGGATCAAAGGAGGAGGCCATTGCAACCTGGAGCTGTACVCGGACTTCATCCGGVAMCTCTCCAAGTTCATCCGCSAGATGGAGAACATCACAACCGAGACAAGGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C73606               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGATCCGGCAGTCCCTGCAACCCGCACCTAAGAAGGTCCACCACCGGGCGAGCACCGGGACGACCACCACCTTCACCACCAACTGCTGCTGCCGCATCCGGGTCCGCAAACCGAGTTGCCGTTGCCCTGGCTGCAACCTAAGCTGCGGCTGCTGCTCTGGTCTGATGAGTTGCTTCTCATCCCGGCTGTTCAAGTGCTCAACCTGCTTCTCCTCCTGCAGCTGCAGGGGATGCTTCAAGTGCCCAACCTGCTTCTCCTTCTCCTGCAGCTGCTGCAGGAGCTGCCTCAAGTGCCCAACCTTCAAATGCTGCTGCTGCGGTTCATGCAGAGATGAGCAATAATGCAAATCTCTATGTGCTTGTGTATAGGAAAAAGAGTGGTTCCGATATATCTGACAAGTTTAATTCTGTAGAAACTAGACCTTGGTTCTCTTAGCTAAACAAACCATAGCAAGATAAAGATGCTTCTCCTTTTCA]


>consensus_5892#0 GCTGGCTGAAGGCTGTGAGAGTGTGAGGTCTAGCTGTGCAATGTGCAGGTGCAGCCATCG CTGCTGCTGCTGCTGCTCTGCTCTTTTCATGTTGACACTTCGCTAAACCCCTCCCAAAAC CTCCTCCCCCCCCCCCCCCCCCGATGCGTTCTTGGCCAGGGTCGGGAGCGAGGCGTTCTT GATTTTTTTCTTCTTCTGTTTTTGTTCTTGATTGATTGGATTGGGGAGTGATTCGGTTTG TTCTTGATTTTGATTTTTTGTTGTTGTTGTTGTTGTTTGGGGAGAAAGAGACGAAGGGGA AGCTGTGATTTTCTCTTCCTTTCCACCGAGAGAAAATTTTTTGATCTGTTTGTTGTTTCT TGGAATCGGTTTTGGTTCAAGAACAGGCGCCGCCTTTTGTTCCGGGAAATTCGCTTGTGA TCCTCCGAAACCCAGAATTTCTTTTTTCGATCCGTTTTGATCGATTGAAAGCAAATATCA TCTTGAAAAGGATCGTTCTTGCTGGTGTTGGTTTGGGGAGGAGGGGGAGGTTTTCCCTCT GACGAGCAAGCAAAGCATTTGGGGCCGCCTGTCGATGACTGAGGGTTTGATCCGATGCTG TCGGGGTGCACGGTGTCCAGTCTCGCGGCGAGGTTCGCCTTCTTCCCGCCGGAGCCGGCG ACCTACGCCGTCAGGAAGGATGAGGCGTGCGGCGGCGGAGGGCGGCTGGTGGCGTCGGGC GTCCCGCGGGACGCCGCCGTGGACGTGCTGCTGGTGGACACCAGGAAGGGGAGCAAGGTG GTGGCCTTCTACCTGAGGAACCCCGCCGCCCGCCTCACCGTGCTCTACTCGCACGGCAAC GCCGCCGACCTCGGCCAGCTCTACGACCTCTTCGTGCAGCTCAAGGTCAATCTCAAGGTC AATCTGATGGGATATGACTACTCTGGGTATGGAGCATCTACTGGCAAGCCAAGTGAAGAG AATACATATGCAGACATTGAGGCAGTTTACCAGTGCTTAGAAACAGAGTATGGAATCAGT CAGGAAGACCTTATCTTGTATGGACAATCTGTTGGCAGTGGACCTACATTGCATTTAGCT TCCCGTTTACCAAGATTGCGTGGCGTGGTTCTTCATAGCGCTATACTGTCAGGCCTCCGA GTTGTTTGCCATGTGAACTTTACTTTCTGCTTTGACATCTACAAAAATGTGAAGAAAATC AAAAAGGTTAAATCCCCAGTGCTTGTTATTCATGGAACTGATGATGATGTCGTGAACTGG TCGCATGGTAACGAGCTGTGGAAACTGGCGAGGGAGCCTTACGATCCGCTATGGATCAAA GGAGGAGGCCATTGCAACCTGGAGCTGTACCCGGACTTCATCCGCCACCTCTCCAAGTTC ATCCGCGAGATGGAGAACATCACAACGAAGACAAGGCTTAAGAAGATCCGGCAGTCCCTG CAACCCGCACCTAAGAAGGTCCACCACCGGGCGAGCACCGGGACGACCACCACCTTCACC ACCAACTGCTGCTGCCGCATCCGGGTCCGCAAACCGAGTTGCCGTTGCCCTGGCTGCAAC CTAAGCTGCGGCTGCTGCTCTGGTCTGATGAGTTGCTTCTCATCCCGGCTGTTCAAGTGC TCAACCTGCTTCTCCTCCTGCAGCTGCAGGGGATGCTTCAAGTGCCCAACCTGCTTCTCC TTCTCCTGCAGCTGCTGCAGGAGCTGCCTCAAGTGCCCAACCTTCAAATGCTGCTGCTGC GGTTCATGCAGAGATGAGCAATAATGCAAATCTCTATGTGCTTGTGTATAGGAAAAAGAG TGGTTCCGATATATCTGACAAGTTTAATTCTGTAGAAACTAGACCTTGGTTCTCTTAGCT AAACAAACCATAGCAAGATAAAGATGCTTCTCCTTTTCA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)