Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5896 cluster # 5896       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5896#0 length = 533 sequences # 3  

consensusID : consensus_5896#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 533
fasta sequence
                              [CCCTCCGCGGCAACCCCCCCGCGCTCCGCCACAGAAGCCGACGCCGACGCCGCGCGCGTACATGCCGCCGCTCCACGCCGTCTCCCCCGCGGCGGCGGCCGCCCCGCCGCGCGCGCTCTCCTCCGCCGCGCGCGTCCCGCAGCGCCCAGGTTGTGTTCCAGAACGCCCAAACATTTTAAGCTCCTCCACAAACTTCATGAGTCTCCGTGCTGGACCAATGCGCTTCTATAGCAGGCCTCTTATTCTTCAAAACTCGGACAAGAGAGCAGTATTGAGGCATGCCACTATTGAAGAAATTGAGGCAGAAAAATCTGTCATTGAAGACCAAGCTAGAGAAAGGATGGAAAAGGCAATTGAAACAGTCCAAAATAACTTCAATACTGTGAGGACAGGGCGGGCAAACCCAGCTATGCTTGACAGGATTGAGGTTGAGTATTATGGAACTCCAGTGAACTTGAAGAGCATCGCACAGATAAACACTCCAGATGCAACTTCTCTCCTTATTCAGCCATATGACAAATCCTCCCTCAAGC]

[+] EMBL CB658547             [CCCTCCGCGGCAACCCCCCCGCGCTCCGCCACAGAAGCCGACGCCGACGCCGCGCGCGTACATGCCGCCGCTCCACGCCGTCTCCCCCGCGGCGGCGGCCGCCCCGCCGCGCGCGCTCTCCTCCGCCGCGCGCGTCCCGCAGCGCCCAGGTTGTGTTCCAGAACGCCCAAACATTTTAAGCTCCTCCACAAACTTCATGAGTCTCCGTGCTGGACCAATGCGCTTCTATAGCAGGCCTCTTATTCTTCAAAACTCGGACAAGAGAGCAGTATTGAGGCATGCCACTATTGAAGAAATTGAGGCAGAAAAATCTGTCATTGAAGACCAAGCTAGAGAAAGGATGGAAAAGGCAATTGAAACAGTCCAAAATAACTTCAATACTGTGAGGACAGGGCGGGCAAACCCAGCTATGCTTGACAGGATTGAGGTTGAGTATTATGGAACTCCAGTGAACTTGAAGAGCATCGCACAGATAAACACTCCAGATGCAACTTCTCTCCTTATTCAGCCATATGACAAATCCTCCCTCAAG ]
[+] EMBL CB632283             [               CCCCCTCGCTCCGCCACAGAAGCCGACGCCGACGCCGCGCGCGTACATGCCGCCGCTCCACGCCGTCTCCCCCGCGGCGGCGGCCGCCCCGCCGCGCGCGCTCTCCTCCGCCGCGCGCGTCCCGCAGCGCCCAGGTTGTGTTCCAGAACGCCCAAACATTTTAAGCTCCTCCACAAACTTCATGAGTCTCCGTGCTGGACCAATGCGCTTCTATAGCAGGCCTCTTATTCTTCAAAACTCGGACAAG     AGTATTGAGGCATGCCACTATTGAAGAAATTGAGGCAGAAAAATCTGTCATTGAAGACCAAGCTAGAGAAAGGATGGAAAAGGCAATTGAAACAGTCCAAAATAACTTCAATACTGTGAGGACAGGGCGGGCAAACCCAGCTATGCTTGACAGGATTGAGGTTGAGTATTATGGAACTCCAGTGAACTTGAAGAGCATCGCACAGATAAACACTCCAGATGCAACTTCTCTCCTTATTCAGCCATATGACAAATCCTCCCTCAAG ]
[-] EMBL CB658548             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCCAGATGCAACTTCTCTCCTTATTCAGCCATATGACAAATCCTCCCTCAAGC]


>consensus_5896#0 CCCTCCGCGGCAACCCCCCCGCGCTCCGCCACAGAAGCCGACGCCGACGCCGCGCGCGTA CATGCCGCCGCTCCACGCCGTCTCCCCCGCGGCGGCGGCCGCCCCGCCGCGCGCGCTCTC CTCCGCCGCGCGCGTCCCGCAGCGCCCAGGTTGTGTTCCAGAACGCCCAAACATTTTAAG CTCCTCCACAAACTTCATGAGTCTCCGTGCTGGACCAATGCGCTTCTATAGCAGGCCTCT TATTCTTCAAAACTCGGACAAGAGAGCAGTATTGAGGCATGCCACTATTGAAGAAATTGA GGCAGAAAAATCTGTCATTGAAGACCAAGCTAGAGAAAGGATGGAAAAGGCAATTGAAAC AGTCCAAAATAACTTCAATACTGTGAGGACAGGGCGGGCAAACCCAGCTATGCTTGACAG GATTGAGGTTGAGTATTATGGAACTCCAGTGAACTTGAAGAGCATCGCACAGATAAACAC TCCAGATGCAACTTCTCTCCTTATTCAGCCATATGACAAATCCTCCCTCAAGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)