cluster # 5903

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Oryza sativa
cluster # 5903 cluster # 5903 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5903#0 length = 443 sequences # 2

consensus_5903#1 length = 275 sequences # 1

consensusID : consensus_5903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 443
fasta sequence

                              [TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCATTTCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCAAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCACCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATTATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAACTTGGCGGAAAGG]

[+] EMBL CF314947             [TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCATTTCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCAAGCAAAAGGAAC                                                                                                                                                                                                                            ]
[+] EMBL CF318713             [                TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCACCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATTATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAACTTGGCGGAAAGG]




>consensus_5903#0
TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCCAATAAT
CCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTT
CCGACCCCAACATTAAACCATTTCGAGTCAACTGACAACCATAGACTAAACCAAAAATAC
GGGGGACTGCATAAATAAAACATCAGTGTCAAGCAAAAGGAACCGCTCAACACTTGACCT
CCTTCACCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGG
CAAACACCAAGCCGCCATCATTATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGA
GCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTT
CCGCATCCAACTTGGCGGAAAGG

consensusID : consensus_5903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [CTGTCAACGATACGCTACGTAACGGCATGAAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCTTCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTACACCAAAAATACGGGGGACTGCATAGATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAGCACTTGAACTCCTCAGTCCAT]

[+] EMBL CF321398             [CTGTCAACGATACGCTACGTAACGGCATGAAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCTTCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTACACCAAAAATACGGGGGACTGCATAGATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAGCACTTGAACTCCTCAGTCCAT]




>consensus_5903#1
CTGTCAACGATACGCTACGTAACGGCATGAAGTGTTTTTTTTTTTTTTTTTTTTTTTTTT
TTCTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCTTCTCAACATCC
ATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGAC
AACCATAGACTACACCAAAAATACGGGGGACTGCATAGATAAAACATCAGTGTCGAGCAA
AAGGAACCGCTCAGCACTTGAACTCCTCAGTCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5903#0      ------------------------TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36
consensus_5903#1      CTGTCAACGATACGCTACGTAACGGCATGAAGTGTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                                                      * **************************

consensus_5903#0      TTTTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCC 96
consensus_5903#1      TTCTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCTTCTCAACATCC 120
                      ** ********************************************* * *********

consensus_5903#0      ATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCATTTCGAGTCAACTGAC 156
consensus_5903#1      ATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGAC 180
                      ***************************** *************** **************

consensus_5903#0      AACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCAAGCAA 216
consensus_5903#1      AACCATAGACTACACCAAAAATACGGGGGACTGCATAGATAAAACATCAGTGTCGAGCAA 240
                      ************ ************************ **************** *****

consensus_5903#0      AAGGAACCGCTCAACACTTGACCTCCTTCACCCCATGAAAAAAGTAAAGGAAGGTTGGGT 276
consensus_5903#1      AAGGAACCGCTCAGCACTTGAACTCCT-CAGTCCAT------------------------ 275
                      ************* ******* ***** **  ****                        

consensus_5903#0      CGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATTATGCATGCTCTCAC 336
consensus_5903#1      ------------------------------------------------------------
                                                                                  

consensus_5903#0      CAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGT 396
consensus_5903#1      ------------------------------------------------------------
                                                                                  

consensus_5903#0      TCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAACTTGGCGGAAAGG 443
consensus_5903#1      -----------------------------------------------