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Oryza sativa
cluster # 5923 cluster # 5923       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5923#0 length = 1006 sequences # 3  

consensusID : consensus_5923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1006
fasta sequence
                              [CAAATCGGCAGATACGAAGGGAACATTCCAACCTCCTCCCACACGGCTCCACCAAGAGGCGCGGCCCGCTCGATCCGCTGATTCACCAGCGTCGGTCTGGTCGCCGAGTGGCAACGTAGGCCAACCCCTACGCGATGCCGTCGTCGAGCAGGACGGAGACGGTGAAGAACGCGCTGTCGCGGTGGGCGCGGAGAGTCGGCGAGACGACCAGGAAGGCCGAGGACCTGTCGCGCAACACATGGCAGCACCTGAGGACGGCGCCGAGCATCGGGGAGGCGGCCGTGGGGAGGATCGCGCAGGGGACCAAGGTCCTGGNCGAGGGCGNCCACGACAAGATATTCCGGNANGCGTTCAG-GCGNCGNCCGACGAGCAG-TTCG-AAATCCTACGNGTGTTAACTTTTTCA-CTTCGCCGG-CCGGTGAT-GGCATCCTGTACCTCTCCACGGCCAGGGTCGCCTTCTGCAGCGACAGCCCACTCTCCTACGAGGCCGGCGGCGGCAGCAAAGAGTGGAGCTACTACAAGGTGGCGATTCCTCTGCACAGGCTGAGGTCGGCGAGCCCGTCGGCCAGCAAGCAGAGGCCCGCGGAGAAGTTCATCCAGCTCGTGTCGGTGGACCGCCATGAGTTCTGGTTGATGGGCTTTGTGAACTACGACAGCGCGGTCAAGCACTTGCAGGAGGCTCTCAGCGGCTTCCACCACCTGCAAGCGTGAGTGCGTGACAGGCGGCATCGGCATTTGCCCGCGCTAATCTTCGTTGTTCGCTGATTGACACGGCGTGATTTGTGTCTTGGGGTGTTTGTGCTCTAGTTCTTCTTGCTGAGGATATGTTTATGAGTGCATCGGTCACTTGAGATTGTTTGGGATTGCGGATATCTTCGATTGTTTGGAGATACATGTCACACATCTAAGATTCCTGAAGCTCTTCACTTAAAATCTTATAGGTTTTGGAAACTGTGGTTGCCTTATTTTTTTTTTTGAGAGAATAGCCAACATGATCCTTGAAGTTTTG]

[+] EMBL OSC23271             [CAAATCGGCAGATACGAAGGGAACATTCCAACCTCCTCCCACACGGCTCCACCAAGAGGCGCGGCCCGCTCGATCCGCTGATTCACCAGCGTCGGTCTGGTCGCCGAGTGGCAACGTAGGCCAACCCCTACGCGATGCCGTCGTCGAGCAGGACGGAGACGGTGAAGAACGCGCTGTCGCGGTGGGCGCGGAGAGTCGGCGAGACGACCAGGAAGGCCGAGGACCTGTCGCGCAACACATGGCAGCACCTGAGGACGGCGCCGAGCATCGGGGAGGCGGCCGTGGGGAGGNTCGCGCAGGGGACCAAGGTCCTGGNCGAGGGCGNCCACGACAAGATATTCCGGNANGCGTTCAG GCGNCGNCCGACGAGCAG TTCG AAATCCTACGNGTGTTAACTTTTTCA CTTCGCCGG CCGGTGAT GGCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSC28181             [ AAATCGGCAGATACGAAGGGAACATTCCAACCTCCTCCCACACGGCTCCACCAAGAGGCGCGGCCCGCTCGATCCGCTGATTGACCAGCGTCGGTCTGGTCGCCGAGTGGCAACGTAGGCCAACCCCTACGCGATGCCGTCGTCGAGCAGGACGGAGACGGTGAAGAACGCGCTGTCGCGGTGGGCGCGGAGAGTCGGCGAGACGACCAGGAAGGCCGAGGACCTNTCGCGCAACACATGGCAGCACCTGAGGACGGCGCCGAGCATCGGGGAGGCGGCCGTNGGGAGGATCGCGCAGGGGNCCAAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK102696             [              CGAAGGGAACATTCCAACCTCCTCCCACACGGCTCCACCAAGAGGCGCGGCCCGCTCGATCCGCTGATTCACCAGCGTCGGTCTGGTCGCCGAGTGGCAACGGAGGCCAACCCCTACGCGATGCCGTCGTCGAGCAGGACGGAGACGGTGAAGAACGCGCTGTCGCGGTGGGCGCGGAGAGTCGGCGAGACGACCAGGAAGGCCGAGGACCTGTCGCGCAACACATGGCAGCACCTGAGGACGGCGCCGAGCATCGGGGAGGCGGCCGTGGGGAGGATCGCGCAGGGGACCAAGGTCCTGGCCGAGGGCGGCCACGACAGGATATTCCGGCAGGCGTTCAGCGCGCCGCCCGACGAGCAGCTCCGCAAGTCCTACGCGTGCT ACCTCTCCACCTCCGCCGGCCCGGTGATGGGCATCCTGTACCTCTCCACGGCCAGGGTCGCCTTCTGCAGCGACAGCCCACTCTCCTACGAGGCCGGCGGCGGCAGCAAAGAGTGGAGCTACTACAAGGTGGCGATTCCTCTGCACAGGCTGAGGTCGGCGAGCCCGTCGGCCAGCAAGCAGAGGCCCGCGGAGAAGTTCATCCAGCTCGTGTCGGTGGACCGCCATGAGTTCTGGTTGATGGGCTTTGTGAACTACGACAGCGCGGTCAAGCACTTGCAGGAGGCTCTCAGCGGCTTCCACCACCTGCAAGCGTGAGTGCGTGACAGGCGGCATCGGCATTTGCCCGCGCTAATCTTCGTTGTTCGCTGATTGACACGGCGTGATTTGTGTCTTGGGGTGTTTGTGCTCTAGTTCTTCTTGCTGAGGATATGTTTATGAGTGCATCGGTCACTTGAGATTGTTTGGGATTGCGGATATCTTCGATTGTTTGGAGATACATGTCACACATCTAAGATTCCTGAAGCTCTTCACTTAAAATCTTATAGGTTTTGGAAACTGTGGTTGCCTTATTTTTTTTTTTGAGAGAATAGCCAACATGATCCTTGAAGTTTTG]


>consensus_5923#0 CAAATCGGCAGATACGAAGGGAACATTCCAACCTCCTCCCACACGGCTCCACCAAGAGGC GCGGCCCGCTCGATCCGCTGATTCACCAGCGTCGGTCTGGTCGCCGAGTGGCAACGTAGG CCAACCCCTACGCGATGCCGTCGTCGAGCAGGACGGAGACGGTGAAGAACGCGCTGTCGC GGTGGGCGCGGAGAGTCGGCGAGACGACCAGGAAGGCCGAGGACCTGTCGCGCAACACAT GGCAGCACCTGAGGACGGCGCCGAGCATCGGGGAGGCGGCCGTGGGGAGGATCGCGCAGG GGACCAAGGTCCTGGNCGAGGGCGNCCACGACAAGATATTCCGGNANGCGTTCAGGCGNC GNCCGACGAGCAGTTCGAAATCCTACGNGTGTTAACTTTTTCACTTCGCCGGCCGGTGAT GGCATCCTGTACCTCTCCACGGCCAGGGTCGCCTTCTGCAGCGACAGCCCACTCTCCTAC GAGGCCGGCGGCGGCAGCAAAGAGTGGAGCTACTACAAGGTGGCGATTCCTCTGCACAGG CTGAGGTCGGCGAGCCCGTCGGCCAGCAAGCAGAGGCCCGCGGAGAAGTTCATCCAGCTC GTGTCGGTGGACCGCCATGAGTTCTGGTTGATGGGCTTTGTGAACTACGACAGCGCGGTC AAGCACTTGCAGGAGGCTCTCAGCGGCTTCCACCACCTGCAAGCGTGAGTGCGTGACAGG CGGCATCGGCATTTGCCCGCGCTAATCTTCGTTGTTCGCTGATTGACACGGCGTGATTTG TGTCTTGGGGTGTTTGTGCTCTAGTTCTTCTTGCTGAGGATATGTTTATGAGTGCATCGG TCACTTGAGATTGTTTGGGATTGCGGATATCTTCGATTGTTTGGAGATACATGTCACACA TCTAAGATTCCTGAAGCTCTTCACTTAAAATCTTATAGGTTTTGGAAACTGTGGTTGCCT TATTTTTTTTTTTGAGAGAATAGCCAACATGATCCTTGAAGTTTTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)