These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1162 fasta sequence [GCCTCTCCACCGGGAACCGCTCACCGGCCGCCACACACGAGTGCAGGATGCTCCCCCTCGCCGCCGGCGCCGGCGCCGCGAGACCCTGCCTCTCCTCCTCACCGGCGCCGCCGGTATCCTCGCCCGGGGCGATTCCTCTCCTTCGCCACACTCCTATCCCTCACCACCGCAGGCGCCCCCTCGCGGCGCTCCGAACCCGCATCATGCTCCTCCGGCCTCTCAGAGCCGCCGCCTCGCCGGGGCCGGCGGCGTCCTCGCGCCCGGCAAGGGACCGCGTGATTGACTTCGGGAAGCACAAGGGGCAGATGCTGGGCACGCTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACTACGGGGACACCGCGGCATGGGCGAGCCTCGCGCGGGAGGTGCTCGACGACCCGGTCTACGTCGACCGCGTCGAGTGGGAGCACGCGCACCGCTTCCTCCGCGGGGACACCGACTACGACGGCGACGGCGAGGATGGGCCGCTCCATGAGATGGCCGACCGCTTCGGCTGGGACCTCTCCGACGAGGAGGGGTGGAGCCGCCTCGACTTCCGCCTCCTCGGCACCTCCTACGGTGGCCGCATCCCGCGAAAGGGCGGCCGGAGGCAAACCACCACCAGCTCCCTGTTCGACATCGGGGCTGAAACGGACGGCCCGCGAGGGAAGCGGGACGAGAGGAGGGAGCGGATGCGGCTGAGGAGGGAGACGCAGGTGAGGGGTGCCAAGTTGGATATGCTCGGGGTGAACGCCGGCGTCAAGGACGGCGGTGTTCTAGGGACGCCGAGGAAGGCCCGTACTAGGACGACGGCCAAGACGGACATTTTGGGATTGGGTCGGCGCAGGAGCCGCGGCGGTGAGGTGCTCGGCGAGAAGGTGTTGCCTGGTTCCGGCGGTCAGGGAGGGAACCCGTTCCCCGGCCGGCAAGCATTCCTCGACAAGGTCAGGAAGCTGAAAGATGATAGCTAGTTTGGCGACTTCAGGAGATCAGAACAATAGGGTGAATTGTACATGTAAATCTTGATTTTGGCTGAGGATTATTAGTTTACGATTGACTGAACGATTTGTGAGAGGTTGGTTATGCTGAATTTGTGCAGTTGGTTGCGAGTTTGCAATTGTGTATCATTGCGCCCTGTAATTGTGATTCA] [+] EMBL AK103850 [GCCTCTCCACCGGGAACCGCTCACCGGCCGCCACACACGAGTGCAGGATGCTCCCCCTCGCCGCCGGCGCCGGCGCCGCGAGACCCTGCCTCTCCTCCTCACCGGCGCCGCCGGTATCCTCGCCCGGGGCGATTCCTCTCCTTCGCCACACTCCTATCCCTCACCACCGCAGGCGCCCCCTCGCGGCGCTCCGAACCCGCATCATGCTCCTCCGGCCTCTCAGAGCCGCCGCCTCGCCGGGGCCGGCGGCGTCCTCGCGCCCGGCAAGGGACCGCGTGATTGACTTCGGGAAGCACAAGGGGCAGATGCTGGGCACGCTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACTACGGGGACACCGCGGCATGGGCGAGCCTCGCGCGGGAGGTGCTCGACGACCCGGTCTACGTCGACCGCGTCGAGTGGGAGCACGCGCACCGCTTCCTCCGCGGGGACACCGACTACGACGGCGACGGCGAGGATGGGCCGCTCCATGAGATGGCCGACCGCTTCGGCTGGGACCTCTCCGACGAGGAGGGGTGGAGCCGCCTCGACTTCCGCCTCCTCGGCACCTCCTACGGTGGCCGCATCCCGCGAAAGGGCGGCCGGAGGCAAACCACCACCAGCTCCCTGTTCGACATCGGGGCTGAAACGGACGGCCCGCGAGGGAAGCGGGACGAGAGGAGGGAGCGGATGCGGCTGAGGAGGGAGACGCAGGTGAGGGGTGCCAAGTTGGATATGCTCGGGGTGAACGCCGGCGTCAAGGACGGCGGTGTTCTAGGGACGCCGAGGAAGGCCCGTACTAGGACGACGGCCAAGACGGACATTTTGGGATTGGGTCGGCGCAGGAGCCGCGGCGGTGAGGTGCTCGGCGAGAAGGTGTTGCCTGGTTCCGGCGGTCAGGGAGGGAACCCGTTCCCCGGCCGGCAAGCATTCCTCGACAAGGTCAGGAAGCTGAAAGATGATAGCTAGTTTGGCGACTTCAGGAGATCAGAACAATAGGGTGAATTGTACATGTAAATCTTGATTTTGGCTGAGGATTATTAGTTTACGATTGACTGAACGATTTGTGAGAGGTTGGTTATGCTGAATTTGTGCAGTTGGTTGCGAGTTTGCAATTGTGTATCATTGCGCCCTGTAATTGTGATT ] [+] EMBL AK060973 [ TCTCCACCGGGAACCGCTCACCGGCCGCCACACACGAGTGCAGGATGCTCCCCCTCGCCGCCGGCGCCGGCGCCGCGAGACCCTGCCTCTCCTCCTCACCGGCGCCGCCGGTATCCTCGCCCGGGGCGATTCCTCTCCTTCGCCACACTCCTATCCCTCACCACCGCAGGCGCCCCCTCGCGGCGCTCCGAACCCGCATCATGCTCCTCCGGCCTCTCAGAGCCGCCGCCTCGCCGGGGCCGGCGGCGTCCTCGCGCCCGGCAAGGGACCGCGTGATTGACTTCGGGAAGCACAAGGGGCAGATGCTGGGCACGCTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACTACGGGGACACCGCGGCATGGGCGAGCCTCGCGCGGGAGGTGCTCGACGACCCGGTCTACGTCGACCGCGTCGAGTGGGAGCACGCGCACCGCTTCCTCCGCGGGGACACCGACTACGACGGCGACGGCGAGGATGGGCCGCTCCATGAGATGGCCGACCGCTTCGGCTGGGACCTCTCCGACGAGGAGGGGTGGAGCCGCCTCGACTTCCGCCTCCTCGGCACCTCCTACGGTGGCCGCATCCCGCGAAAGGGCGGCCGGAGGCAAACCACCACCAGCTCCCTGTTCGACATCGGGGCTGAAACGGACGGCCCGCGAGGGAAGCGGGACGAGAGGAGGGAGCGGATGCGGCTGAGGAGGGAGACGCAGGTGAGGGGTGCCAAGTTGGATATGCTCGGGGTGAACGCCGGCGTCAAGGACGGCGGTGTTCTAGGGACGCCGAGGAAGGCCCGTACTAGGACGACGGCCAAGACGGACATTTTGGGATTGGGTCGGCGCAGGAGCCGCGGCGGTGAGGTGCTCGGCGAGAAGGTGTTGCCTGGTTCCGGCGGTCAGGGAGGGAACCCGTTCCCCGGCCGGCAAGCATTCCTCGACAAGGTCAGGAAGCTGAAAGATGATAGCTAGTTTGGCGACTTCAGGAGATCAGAACAATAGGGTGAATTGTACATGTAAATCTTGATTTTGGCTGAGGATTATTAGTTTACGATTGACTGAACGATTTGTGAGAGGTTGGTTATGCTGAATTTGTGCAGTTGGTTGCGAGTTTGCAATTGTGTATCATTGCGCCCTGTAATTGTGATTCA] consensusID : consensus_5928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [GACTTCGGGAAGCACAAGGGGCAGATGCTGGGCACGNTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACTACGGGGACACCGCGGCATGNGNGAGCCTCGNGCGGGAGGTGCTCGANGACCCGGTCTANGTCGACCNCNTCGANGTGGGAGCACNAGCANNGATTNCTTCGNGGGGACACCG] [+] EMBL OSC24781 [GACTTCGGGAAGCACAAGGGGCAGATGCTGGGCACGNTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACTACGGGGACACCGCGGCATGNGNGAGCCTCGNGCGGGAGGTGCTCGANGACCCGGTCTANGTCGACCNCNTCGANGTGGGAGCACNAGCANNGATTNCTTCGNGGGGACACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5928#0 GCCTCTCCACCGGGAACCGCTCACCGGCCGCCACACACGAGTGCAGGATGCTCCCCCTCG 60 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 CCGCCGGCGCCGGCGCCGCGAGACCCTGCCTCTCCTCCTCACCGGCGCCGCCGGTATCCT 120 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 CGCCCGGGGCGATTCCTCTCCTTCGCCACACTCCTATCCCTCACCACCGCAGGCGCCCCC 180 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 TCGCGGCGCTCCGAACCCGCATCATGCTCCTCCGGCCTCTCAGAGCCGCCGCCTCGCCGG 240 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 GGCCGGCGGCGTCCTCGCGCCCGGCAAGGGACCGCGTGATTGACTTCGGGAAGCACAAGG 300 consensus_5928#1 -----------------------------------------GACTTCGGGAAGCACAAGG 19 ******************* consensus_5928#0 GGCAGATGCTGGGCACGCTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACT 360 consensus_5928#1 GGCAGATGCTGGGCACGNTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACT 79 ***************** ****************************************** consensus_5928#0 ACGGGGACACCGCGGCATGGGCGAGCCTCGCGCGGGAGGTGCTCGACGACCCGGTCTACG 420 consensus_5928#1 ACGGGGACACCGCGGCATGNGNGAGCCTCGNGCGGGAGGTGCTCGANGACCCGGTCTANG 139 ******************* * ******** *************** *********** * consensus_5928#0 TCGACCGCGTCGAG-TGGGAGCACGCGCACCGCTTCCTCCGCGGGGACACCGACTACGAC 479 consensus_5928#1 TCGACCNCNTCGANGTGGGAGCACNAGCANNGATTNCTTCGNGGGGACACCG-------- 191 ****** * **** ********* *** * ** ** ** ********** consensus_5928#0 GGCGACGGCGAGGATGGGCCGCTCCATGAGATGGCCGACCGCTTCGGCTGGGACCTCTCC 539 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 GACGAGGAGGGGTGGAGCCGCCTCGACTTCCGCCTCCTCGGCACCTCCTACGGTGGCCGC 599 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 ATCCCGCGAAAGGGCGGCCGGAGGCAAACCACCACCAGCTCCCTGTTCGACATCGGGGCT 659 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 GAAACGGACGGCCCGCGAGGGAAGCGGGACGAGAGGAGGGAGCGGATGCGGCTGAGGAGG 719 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 GAGACGCAGGTGAGGGGTGCCAAGTTGGATATGCTCGGGGTGAACGCCGGCGTCAAGGAC 779 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 GGCGGTGTTCTAGGGACGCCGAGGAAGGCCCGTACTAGGACGACGGCCAAGACGGACATT 839 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 TTGGGATTGGGTCGGCGCAGGAGCCGCGGCGGTGAGGTGCTCGGCGAGAAGGTGTTGCCT 899 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 GGTTCCGGCGGTCAGGGAGGGAACCCGTTCCCCGGCCGGCAAGCATTCCTCGACAAGGTC 959 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 AGGAAGCTGAAAGATGATAGCTAGTTTGGCGACTTCAGGAGATCAGAACAATAGGGTGAA 1019 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 TTGTACATGTAAATCTTGATTTTGGCTGAGGATTATTAGTTTACGATTGACTGAACGATT 1079 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 TGTGAGAGGTTGGTTATGCTGAATTTGTGCAGTTGGTTGCGAGTTTGCAATTGTGTATCA 1139 consensus_5928#1 ------------------------------------------------------------ consensus_5928#0 TTGCGCCCTGTAATTGTGATTCA 1162 consensus_5928#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||