cluster # 5937

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Oryza sativa
cluster # 5937 cluster # 5937 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5937#0 length = 638 sequences # 2

consensus_5937#1 length = 391 sequences # 1

consensusID : consensus_5937#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence

                              [TGTACAGCATGGCGGTCAAGAGGGACATGGGGGAGAATCCAAATACCCAATATTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTTCTTATTTCTAGTGTTTGCACACGATAGTATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGAAGAGAGTTGGAAGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTTCATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTGGGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGGCATGCAACATTGCTGCTGCANGAACCGCCATTGGCTGCNACATGAACATGGCTGTGGANCTACCCATGCCCCACGTTTGCATCCATGTTACTGGCCTACNCGGATCCATGGTGCCCAANGGGTAATGTTTGGGTGGGAAATACNGCCTAATTGGTGAATTGGCAATTATTGGCNCTTGCCAAAAAAACAATTAAGGNNANCAGGGCAAANATNTNGTGGGGTTTGCCGCCATGNTGAATCCCCAAACTATNTTTAAAAAAAAACCACCCTGCCCAATCCNNCACCCNGGGG]

[-] EMBL AA750783             [TGTACAGCATGGCGGTCAAGAGGGACATGGGGGAGAATCCAAATACCCAATATTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTTCTTATTTCTAGTGTTTGCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AA753531             [                                             tttttttTTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTTCTTATTTCTAGTGTTTGCACACGATAGTATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGAAGAGAGTTGGAAGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTTCATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTGGGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGGCATGCAACATTGCTGCTGCANGAACCGCCATTGGCTGCNACATGAACATGGCTGTGGANCTACCCATGCCCCACGTTTGCATCCATGTTACTGGCCTACNCGGATCCATGGTGCCCAANGGGTAATGTTTGGGTGGGAAATACNGCCTAATTGGTGAATTGGCAATTATTGGCNCTTGCCAAAAAAACAATTAAGGNNANCAGGGCAAANATNTNGTGGGGTTTGCCGCCATGNTGAATCCCCAAACTATNTTTAAAAAAAAACCACCCTGCCCAATCCNNCACCCNGGGG]




>consensus_5937#0
TGTACAGCATGGCGGTCAAGAGGGACATGGGGGAGAATCCAAATACCCAATATTTGCAAG
TCTGAAAATGATTGATATTTTATTCAATGGTTCTTATTTCTAGTGTTTGCACACGATAGT
ATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGA
AGAGAGTTGGAAGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTT
CATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTG
GGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGGCATGCAACATTGC
TGCTGCANGAACCGCCATTGGCTGCNACATGAACATGGCTGTGGANCTACCCATGCCCCA
CGTTTGCATCCATGTTACTGGCCTACNCGGATCCATGGTGCCCAANGGGTAATGTTTGGG
TGGGAAATACNGCCTAATTGGTGAATTGGCAATTATTGGCNCTTGCCAAAAAAACAATTA
AGGNNANCAGGGCAAANATNTNGTGGGGTTTGCCGCCATGNTGAATCCCCAAACTATNTT
TAAAAAAAAACCACCCTGCCCAATCCNNCACCCNGGGG

consensusID : consensus_5937#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [TTTTTTTTTTTTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTACTTATTTCTAGTGTTTGCACACGATAGTATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGAAGAGAGTTGGAGGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTTCATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTGGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGCATGCAACATTGCTGCTGCAGGAGCGCCATTGGCTGCGACATGAACATGGCTGTGGAGCTACCCATGCCCCCCCTTGTCTCGTCCTCT]

[+] EMBL CA759531             [TTTTTTTTTTTTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTACTTATTTCTAGTGTTTGCACACGATAGTATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGAAGAGAGTTGGAGGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTTCATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTGGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGCATGCAACATTGCTGCTGCAGGAGCGCCATTGGCTGCGACATGAACATGGCTGTGGAGCTACCCATGCCCCCCCTTGTCTCGTCCTCT]




>consensus_5937#1
TTTTTTTTTTTTTGCAAGTCTGAAAATGATTGATATTTTATTCAATGGTACTTATTTCTA
GTGTTTGCACACGATAGTATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGA
TCAACAACAACCACAGGAAGAGAGTTGGAGGTTGACAGGGGCCATGTTGCACATGTATGG
CATCTGCATCGCCATCTTCATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTG
CATGCTCTGCATCATCTGGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAG
CTGCATGCAACATTGCTGCTGCAGGAGCGCCATTGGCTGCGACATGAACATGGCTGTGGA
GCTACCCATGCCCCCCCTTGTCTCGTCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5937#0      TGTACAGCATGGCGGTCAAGAGGGACATGGGGGAGAATCCAAATACCCAATATTTGCAAG 60
consensus_5937#1      ------------------------------------------TTTTTTTTTTTTTGCAAG 18
                                                                 *      * ********

consensus_5937#0      TCTGAAAATGATTGATATTTTATTCAATGGTTCTTATTTCTAGTGTTTGCACACGATAGT 120
consensus_5937#1      TCTGAAAATGATTGATATTTTATTCAATGGTACTTATTTCTAGTGTTTGCACACGATAGT 78
                      ******************************* ****************************

consensus_5937#0      ATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGA 180
consensus_5937#1      ATGCAACACCTTATTACTAGAGTACATGTAACCAACGTTTGATCAACAACAACCACAGGA 138
                      ************************************************************

consensus_5937#0      AGAGAGTTGGAAGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTT 240
consensus_5937#1      AGAGAGTTGGAGGTTGACAGGGGCCATGTTGCACATGTATGGCATCTGCATCGCCATCTT 198
                      *********** ************************************************

consensus_5937#0      CATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTG 300
consensus_5937#1      CATCATCTGCTGCTGCCCGAGTCCAGCACAAATAACTTGTTGCATGCTCTGCATCATCTG 258
                      ************************************************************

consensus_5937#0      GGCAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTGGCATGCAACATTGC 360
consensus_5937#1      G-CAACTGGTGCCACAGTGGCACTGAGGCATCATGCCTTGTAGCTG-CATGCAACATTGC 316
                      * ******************************************** *************

consensus_5937#0      TGCTGCANGAACCGCCATTGGCTGCNACATGAACATGGCTGTGGANCTACCCATGCCCCA 420
consensus_5937#1      TGCTGCAGGAGC-GCCATTGGCTGCGACATGAACATGGCTGTGGAGCTACCCATGCCCC- 374
                      ******* ** * ************ ******************* ************* 

consensus_5937#0      CGTTTGCATCCATGTTACTGGCCTACNCGGATCCATGGTGCCCAANGGGTAATGTTTGGG 480
consensus_5937#1      CCCTTGTCTCGTCCTCT------------------------------------------- 391
                      *  ***  **    *                                             

consensus_5937#0      TGGGAAATACNGCCTAATTGGTGAATTGGCAATTATTGGCNCTTGCCAAAAAAACAATTA 540
consensus_5937#1      ------------------------------------------------------------
                                                                                  

consensus_5937#0      AGGNNANCAGGGCAAANATNTNGTGGGGTTTGCCGCCATGNTGAATCCCCAAACTATNTT 600
consensus_5937#1      ------------------------------------------------------------
                                                                                  

consensus_5937#0      TAAAAAAAAACCACCCTGCCCAATCCNNCACCCNGGGG 638
consensus_5937#1      --------------------------------------