cluster # 5940

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Oryza sativa
cluster # 5940 cluster # 5940 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5940#0 length = 1012 sequences # 2

consensus_5940#1 length = 371 sequences # 1

consensusID : consensus_5940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1012
fasta sequence

                              [AGGGCAAGCCACCGACAGCCACAGCCTCGCCGAGCGGGCGAGACGCGAGAAGATCAATGCGAGGATGGAGCTTCTCAAGGAGCTGGTCCCCGGATGCAGTAAGGTATCAGGAACAGCACTGGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTCAATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGACTACGGAGTGTGGAAGGATAACAGGCTTGAACTACAAGAATGGAATGGATTTGGAGCAGGTCACCTGGCCAGACATGGGCGTCCATGGAGCAAGGAATCTCATGCAACTACAACAGCAGTTCTGGCATGGTGATTTAGCACACCCGCTCCAGCCGCCTTCACAGTGGGAAAAGCGGACGGATACCAATCCCCCTGTCTTTAGCAATTCAAGTTCCTCCCTCTTCGGCTATGATCTAGCAAGCTCTGGAGCGCCGGCCCAGACAGGCAACAAGCTAAAGACGGAGCTGTGAGCCTGTGACCAACGGTGGTGGTAGTGATAGCAAGCAGGTCAGCAGAGCAAGCCAAACAAACATACGTGAGCTGTGGACAATGGCGGCTGGATGTCAGGAGAGCTAGCTAGCTAGCTAGGCGTGAGCTGTGGACTGACGGCTGCTGCTGCTGCTGCTGCTGCTGTGGATGGTTGGCAACGTCTTGTGCAGTGCAGCAGTGCGGTGCATGGGACTTTCATTGATTTTGGAGGCCGGATTCTGAGACGATGTACATATGGAATGCAAGATATAGAGAGATACTGTTGTTGCTGTTGTTGGAGACTCTTGGAGCTGGAGGTGATGGATATGGAGGTTTTACTGCTGCTATCTTTTTTTGTAGAGATGAGCGAGAGATACTGTGGATTCTTTTCTTGCTGATGTATTCTTGGTGTATGCCTGACTACGATGGTTTAATGTCAAGGTTATATGAGCAGCATTTATTTGGTGAACAAAAAAAAAAAAAAA]

[+] EMBL AK070970             [AGGGCAAGCCACCGACAGCCACAGCCTCGCCGAGCGGGCGAGACGCGAGAAGATCAATGCGAGGATGGAGCTTCTCAAGGAGCTGGTCCCCGGATGCAGTAAGGTATCAGGAACAGCACTGGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTCAATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGACTACGGAGTGTGGAAGGATAACAGGCTTGAACTACAAGAATGGAATGGATTTGGAGCAGGTCACCTGGCCAGACATGGGCGTCCATGGAGCAAGGAATCTCATGCAACTACAACAGCAGTTCTGGCATGGTGATTTAGCACACCCGCTCCAGCCGCCTTCACAGTGGGAAAAGCGGACGGATACCAATCCCCCTGTCTTTAGCAATTCAAGTTCCTCCCTCTTCGGCTATGATCTAGCAAGCTCTGGAGCGCCGGCCCAGACAGGCAACAAGCTAAAGACGGAGCTGTGAGCCTGTGACCAACGGTGGTGGTAGTGATAGCAAGCAGGTCAGCAGAGCAAGCCAAACAAACATACGTGAGCTGTGGACAATGGCGGCTGGATGTCAGGAGAGCTAGCTAGCTAGCTAGGCGTGAGCTGTGGACTGACGGCTGCTGCTGCTGCTGCTGCTGCTGTGGATGGTTGGCAACGTCTTGTGCAGTGCAGCAGTGCGGTGCATGGGACTTTCATTGATTTTGGAGGCCGGATTCTGAGACGATGTACATATGGAATGCAAGATATAGAGAGATACTGTTGTTGCTGTTGTTGGAGACTCTTGGAGCTGGAGGTGATGGATATGGAGGTTTTACTGCTGCTATCTTTTTTTGTAGAGATGAGCGAGAGATACTGTGGATTCTTTTCTTGCTGATGTATTCTTGGTGTATGCCTGACTACGATGGTTTAATGTCAAGGTTATATGAGCAGCAT                            ]
[+] EMBL AU182326             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGAGCAAGCCAAACAAACATACGTGAGCTGTGGACAATGGCGGCTGGATGTCAGGAGAGCTAGCTAGCTAGCTAGGCGTGAGCTGTGGACTGACGGCTGCTGCTGCTGCTGCTGCTGCTGTGGATGGTTGGCAACGTCTTGTGCAGTGCAGCAGTGCGGTGCATGGGACTTTCATTGATTTTGGAGGCCGGATTNTGAGACGATGTACATATGGAATGCAAGATATAGAGAGATACTGTTGTTGCTGTTGTTGGAGACTCTTGGAGCTGGAGGTGATGGATATGGAGGTTTTACTGCTGCTATCCTTTTTTGTAGAGATGAGCGAGAGATACTGTGGATTCTTTTCTTGCTGATGTATTCTTGGTGTATGCCTGACTACGATGGTTTAATGTCAAGGTTATATGAGCAGCATTTATTTGGTGAACAAAAAAAAAAAAAAA]




>consensus_5940#0
AGGGCAAGCCACCGACAGCCACAGCCTCGCCGAGCGGGCGAGACGCGAGAAGATCAATGC
GAGGATGGAGCTTCTCAAGGAGCTGGTCCCCGGATGCAGTAAGGTATCAGGAACAGCACT
GGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTC
AATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGAC
TACGGAGTGTGGAAGGATAACAGGCTTGAACTACAAGAATGGAATGGATTTGGAGCAGGT
CACCTGGCCAGACATGGGCGTCCATGGAGCAAGGAATCTCATGCAACTACAACAGCAGTT
CTGGCATGGTGATTTAGCACACCCGCTCCAGCCGCCTTCACAGTGGGAAAAGCGGACGGA
TACCAATCCCCCTGTCTTTAGCAATTCAAGTTCCTCCCTCTTCGGCTATGATCTAGCAAG
CTCTGGAGCGCCGGCCCAGACAGGCAACAAGCTAAAGACGGAGCTGTGAGCCTGTGACCA
ACGGTGGTGGTAGTGATAGCAAGCAGGTCAGCAGAGCAAGCCAAACAAACATACGTGAGC
TGTGGACAATGGCGGCTGGATGTCAGGAGAGCTAGCTAGCTAGCTAGGCGTGAGCTGTGG
ACTGACGGCTGCTGCTGCTGCTGCTGCTGCTGTGGATGGTTGGCAACGTCTTGTGCAGTG
CAGCAGTGCGGTGCATGGGACTTTCATTGATTTTGGAGGCCGGATTCTGAGACGATGTAC
ATATGGAATGCAAGATATAGAGAGATACTGTTGTTGCTGTTGTTGGAGACTCTTGGAGCT
GGAGGTGATGGATATGGAGGTTTTACTGCTGCTATCTTTTTTTGTAGAGATGAGCGAGAG
ATACTGTGGATTCTTTTCTTGCTGATGTATTCTTGGTGTATGCCTGACTACGATGGTTTA
ATGTCAAGGTTATATGAGCAGCATTTATTTGGTGAACAAAAAAAAAAAAAAA

consensusID : consensus_5940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [CACTGGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTCAATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGACTACGGAGGTACCATTATGACAAATACTGTTTCTTGAAGATTTCTGCAAGTTTAGCTTNCGTGGATTTACAACAACAATTTCCTGTGTATATGTATTGCTCCCTTCTTGCCCACATATCGACCTTTTTTTTTAATACTGGGAAAATGCTTTGATACTTCGCCAATACGCATATATCCGGTATCAGTTGCCTATTGGGATACTGAGATGGGCAGTTTAGGGGAAGTATCAGTGGATCCATAGACCATAG]

[+] EMBL C72700               [CACTGGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTCAATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGACTACGGAGGTACCATTATGACAAATACTGTTTCTTGAAGATTTCTGCAAGTTTAGCTTNCGTGGATTTACAACAACAATTTCCTGTGTATATGTATTGCTCCCTTCTTGCCCACATATCGACCTTTTTTTTTAATACTGGGAAAATGCTTTGATACTTCGCCAATACGCATATATCCGGTATCAGTTGCCTATTGGGATACTGAGATGGGCAGTTTAGGGGAAGTATCAGTGGATCCATAGACCATAG]




>consensus_5940#1
CACTGGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACT
TGTCAATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCT
TGACTACGGAGGTACCATTATGACAAATACTGTTTCTTGAAGATTTCTGCAAGTTTAGCT
TNCGTGGATTTACAACAACAATTTCCTGTGTATATGTATTGCTCCCTTCTTGCCCACATA
TCGACCTTTTTTTTTAATACTGGGAAAATGCTTTGATACTTCGCCAATACGCATATATCC
GGTATCAGTTGCCTATTGGGATACTGAGATGGGCAGTTTAGGGGAAGTATCAGTGGATCC
ATAGACCATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5940#0      AGGGCAAGCCACCGACAGCCACAGCCTCGCCGAGCGGGCGAGACGCGAGAAGATCAATGC 60
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      GAGGATGGAGCTTCTCAAGGAGCTGGTCCCCGGATGCAGTAAGGTATCAGGAACAGCACT 120
consensus_5940#1      --------------------------------------------------------CACT 4
                                                                              ****

consensus_5940#0      GGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTC 180
consensus_5940#1      GGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTC 64
                      ************************************************************

consensus_5940#0      AATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGAC 240
consensus_5940#1      AATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGAC 124
                      ************************************************************

consensus_5940#0      TACGGAGTGTGGAAGGATAACAGGCTTGAACTACAAGAATGGAATGGATTTGGAGCAGGT 300
consensus_5940#1      TACGGAG-GTACCATTATGACAAAT-----------------ACTGTTTCTTGAAGATTT 166
                      ******* **   *  ** ***                    * **  * * **  *  *

consensus_5940#0      CACCTGGCCAGACATGGGCGTCCATGGAGCAAGGAATCTCATGCAACTACAACAGCAGTT 360
consensus_5940#1      CTGCAAGTTTAGCTTNCGTGGATTTACAACAAC-AATTTCCTGTGTATATG-TATTGCTC 224
                      *  *  *     * *  * *    *  * ***  *** ** **    **    *    * 

consensus_5940#0      CTGGCATGGTGATTTAGCACACCCGCTCCAGCCGCCTTCACAGTGGGAAAAGCGGACGGA 420
consensus_5940#1      CCTTCTTGCCCACATATCG-ACCTTTTT------TTTTAATACTGGGAAAA-TGCTTTGA 276
                      *   * **   *  ** *  ***   *         ** * * ********  *    **

consensus_5940#0      TACCAATCCCCCTGTCTTTAGCAATTCAAGTTC--CTCCCTCTTCGGCTA-TGATCTAGC 477
consensus_5940#1      TAC---TTCGCCAATACGCATATATCCGGTATCAGTTGCCTATTGGGATACTGAGATGGG 333
                      ***   * * **  *    *   ** *    **   * *** ** ** ** ***  * * 

consensus_5940#0      AAGCTCTGGAGCGCCGGCCCAGACAGGCAACAAGCTAAAGACGGAGCTGTGAGCCTGTGA 537
consensus_5940#1      CAGTTTAGGGGAA--GTATCAGTGGATCCATAGACCATAG-------------------- 371
                       ** *  ** *    *   ***     * * *  * * **                    

consensus_5940#0      CCAACGGTGGTGGTAGTGATAGCAAGCAGGTCAGCAGAGCAAGCCAAACAAACATACGTG 597
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      AGCTGTGGACAATGGCGGCTGGATGTCAGGAGAGCTAGCTAGCTAGCTAGGCGTGAGCTG 657
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      TGGACTGACGGCTGCTGCTGCTGCTGCTGCTGCTGTGGATGGTTGGCAACGTCTTGTGCA 717
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      GTGCAGCAGTGCGGTGCATGGGACTTTCATTGATTTTGGAGGCCGGATTCTGAGACGATG 777
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      TACATATGGAATGCAAGATATAGAGAGATACTGTTGTTGCTGTTGTTGGAGACTCTTGGA 837
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      GCTGGAGGTGATGGATATGGAGGTTTTACTGCTGCTATCTTTTTTTGTAGAGATGAGCGA 897
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      GAGATACTGTGGATTCTTTTCTTGCTGATGTATTCTTGGTGTATGCCTGACTACGATGGT 957
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      TTAATGTCAAGGTTATATGAGCAGCATTTATTTGGTGAACAAAAAAAAAAAAAAA 1012
consensus_5940#1      -------------------------------------------------------