These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence [ATGCAGGCGGAGAATGGCGACGACGGGTCGTCGGCGTCGCCGCGGTGGACGTACTTCCCGAAGATCGCCGGAGACATGGCGAGGGAAGGGAGGGTGATGGAGGTGCTGGACAGGCGGGTGGTGGAGTCCGGCGAGGCGGTGGAGGAGGCGGCGGTGCGGAGGCTGGTCCACGTGGCGCTGTGGTGCGCGCAGGAGAAGGCGGNGGCGCGCCCCACCATGGCGCGCGTGGTGGAGATGCTCGAGGGGCGTGGCGCCGCCGCGGAGGCCGTGGAGGCGCCGCCGCCGTCGGACATGATCGTCGTCGACCTCCTCGCGCTCGACCCGGCGGCGCGCGGCCCCGGCCCGTTCGGCCTGCCGCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGANATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACACTATACTTGGGATTTAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU075827 [ATGCAGGCGGAGAATGGCGACGACGGGTCGTCGGCGTCGCCGCGGTGGACGTACTTCCCGAAGATCGCCGGAGACATGGCGAGGGAAGGGAGGGTGATGGAGGTGCTGGACAGGCGGGTGGTGGAGTCCGGCGAGGCGGTGGAGGAGGCGGCGGTGCGGAGGCTGGTCCACGTGGCGCTGTGGTGCGCGCAGGAGAAGGCGGNGGCGCGCCCCACCATGGCGCGCGTGGTGGAGATGCTCGAGGGGCGTGGCGCCGCCGCGGAGGCCGTGGAGGCGCCGCCGCCGTCGGACATGATCGTCGTCGACCTCCTCGCG ] [+] EMBL AU075826 [ TGGCNCCGCCGCGGAGGCCGT GAGGCGCCGCCGCCGTCGNACATGATCGTCGTCGACCTCCTCGCGCTCGACCCGGCGGCGCGCGGCCCCGGCCCGTTCGGCCTGCCGCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGANATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACACTATACTTGGGATTTAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [GGCGCGCGGCCCCGGCCCGTTCGGCCTGCCNCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGAGATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACCCTATACTTGGGATTTGATTGATTATCTTCTGGTTCCCCAGCTAATTAGGGTTTAGATCGATGGCGATTTGATGATCGTCTGATTCAAAGTTTATTTCTTTCGAAATAGAGGTACAAACTGAAGGATTATTTGTTTTTTTTTGCAAAACACAGTTTGTGTGTTTAAGGATTGTTTTGCTTAAAAAAAAAAAAAAGA] [-] EMBL CB666993 [GGCGCGCGGCCCCGGCCCGTTCGGCCTGCCNCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGAGATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACCCTATACTTGGGATTTGATTGATTATCTTCTGGTTCCCCAGCTAATTAGGGTTTAGATCGATGGCGATTTGATGATCGTCTGATTCAAAGTTTATTTCTTTCGAAATAGAGGTACAAACTGAAGGATTATTTGTTTTTTTTTGCAAAACACAGTTTGTGTGTTTAAGGATTGTTTTGCTTAAAAAAAAAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5941#0 ATGCAGGCGGAGAATGGCGACGACGGGTCGTCGGCGTCGCCGCGGTGGACGTACTTCCCG 60 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 AAGATCGCCGGAGACATGGCGAGGGAAGGGAGGGTGATGGAGGTGCTGGACAGGCGGGTG 120 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 GTGGAGTCCGGCGAGGCGGTGGAGGAGGCGGCGGTGCGGAGGCTGGTCCACGTGGCGCTG 180 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 TGGTGCGCGCAGGAGAAGGCGGNGGCGCGCCCCACCATGGCGCGCGTGGTGGAGATGCTC 240 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 GAGGGGCGTGGCGCCGCCGCGGAGGCCGTGGAGGCGCCGCCGCCGTCGGACATGATCGTC 300 consensus_5941#1 ------------------------------------------------------------ consensus_5941#0 GTCGACCTCCTCGCGCTCGACCCGGCGGCGCGCGGCCCCGGCCCGTTCGGCCTGCCGCCG 360 consensus_5941#1 --------------------------GGCGCGCGGCCCCGGCCCGTTCGGCCTGCCNCCG 34 ****************************** *** consensus_5941#0 CCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTC 420 consensus_5941#1 CCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTC 94 ************************************************************ consensus_5941#0 GCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGG 480 consensus_5941#1 GCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGG 154 ************************************************************ consensus_5941#0 AGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTT 540 consensus_5941#1 AGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTT 214 ************************************************************ consensus_5941#0 GGATGAAGCACGTGCGGACGANATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAA 600 consensus_5941#1 GGATGAAGCACGTGCGGACGAGATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAA 274 ********************* ************************************** consensus_5941#0 CCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGAC 660 consensus_5941#1 CCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGAC 334 ************************************************************ consensus_5941#0 GTGAGTCCAGCAACACTATACTTGGGATTTAAAAAAAAAAAAAAAAAAAAAAA------- 713 consensus_5941#1 GTGAGTCCAGCAACCCTATACTTGGGATTTGATTGATTATCTTCTGGTTCCCCAGCTAAT 394 ************** *************** * * * consensus_5941#0 ------------------------------------------------------------ consensus_5941#1 TAGGGTTTAGATCGATGGCGATTTGATGATCGTCTGATTCAAAGTTTATTTCTTTCGAAA 454 consensus_5941#0 ------------------------------------------------------------ consensus_5941#1 TAGAGGTACAAACTGAAGGATTATTTGTTTTTTTTTGCAAAACACAGTTTGTGTGTTTAA 514 consensus_5941#0 ------------------------------ consensus_5941#1 GGATTGTTTTGCTTAAAAAAAAAAAAAAGA 544 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||