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Oryza sativa
cluster # 5941 cluster # 5941       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5941#0 length = 713 sequences # 2  
consensus_5941#1 length = 544 sequences # 1  

consensusID : consensus_5941#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 713
fasta sequence
                              [ATGCAGGCGGAGAATGGCGACGACGGGTCGTCGGCGTCGCCGCGGTGGACGTACTTCCCGAAGATCGCCGGAGACATGGCGAGGGAAGGGAGGGTGATGGAGGTGCTGGACAGGCGGGTGGTGGAGTCCGGCGAGGCGGTGGAGGAGGCGGCGGTGCGGAGGCTGGTCCACGTGGCGCTGTGGTGCGCGCAGGAGAAGGCGGNGGCGCGCCCCACCATGGCGCGCGTGGTGGAGATGCTCGAGGGGCGTGGCGCCGCCGCGGAGGCCGTGGAGGCGCCGCCGCCGTCGGACATGATCGTCGTCGACCTCCTCGCGCTCGACCCGGCGGCGCGCGGCCCCGGCCCGTTCGGCCTGCCGCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGANATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACACTATACTTGGGATTTAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU075827             [ATGCAGGCGGAGAATGGCGACGACGGGTCGTCGGCGTCGCCGCGGTGGACGTACTTCCCGAAGATCGCCGGAGACATGGCGAGGGAAGGGAGGGTGATGGAGGTGCTGGACAGGCGGGTGGTGGAGTCCGGCGAGGCGGTGGAGGAGGCGGCGGTGCGGAGGCTGGTCCACGTGGCGCTGTGGTGCGCGCAGGAGAAGGCGGNGGCGCGCCCCACCATGGCGCGCGTGGTGGAGATGCTCGAGGGGCGTGGCGCCGCCGCGGAGGCCGTGGAGGCGCCGCCGCCGTCGGACATGATCGTCGTCGACCTCCTCGCG                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU075826             [                                                                                                                                                                                                                                                        TGGCNCCGCCGCGGAGGCCGT GAGGCGCCGCCGCCGTCGNACATGATCGTCGTCGACCTCCTCGCGCTCGACCCGGCGGCGCGCGGCCCCGGCCCGTTCGGCCTGCCGCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGANATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACACTATACTTGGGATTTAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_5941#0 ATGCAGGCGGAGAATGGCGACGACGGGTCGTCGGCGTCGCCGCGGTGGACGTACTTCCCG AAGATCGCCGGAGACATGGCGAGGGAAGGGAGGGTGATGGAGGTGCTGGACAGGCGGGTG GTGGAGTCCGGCGAGGCGGTGGAGGAGGCGGCGGTGCGGAGGCTGGTCCACGTGGCGCTG TGGTGCGCGCAGGAGAAGGCGGNGGCGCGCCCCACCATGGCGCGCGTGGTGGAGATGCTC GAGGGGCGTGGCGCCGCCGCGGAGGCCGTGGAGGCGCCGCCGCCGTCGGACATGATCGTC GTCGACCTCCTCGCGCTCGACCCGGCGGCGCGCGGCCCCGGCCCGTTCGGCCTGCCGCCG CCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTC GCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGG AGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTT GGATGAAGCACGTGCGGACGANATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAA CCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGAC GTGAGTCCAGCAACACTATACTTGGGATTTAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_5941#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence
                              [GGCGCGCGGCCCCGGCCCGTTCGGCCTGCCNCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGAGATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACCCTATACTTGGGATTTGATTGATTATCTTCTGGTTCCCCAGCTAATTAGGGTTTAGATCGATGGCGATTTGATGATCGTCTGATTCAAAGTTTATTTCTTTCGAAATAGAGGTACAAACTGAAGGATTATTTGTTTTTTTTTGCAAAACACAGTTTGTGTGTTTAAGGATTGTTTTGCTTAAAAAAAAAAAAAAGA]

[-] EMBL CB666993             [GGCGCGCGGCCCCGGCCCGTTCGGCCTGCCNCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGAGATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACCCTATACTTGGGATTTGATTGATTATCTTCTGGTTCCCCAGCTAATTAGGGTTTAGATCGATGGCGATTTGATGATCGTCTGATTCAAAGTTTATTTCTTTCGAAATAGAGGTACAAACTGAAGGATTATTTGTTTTTTTTTGCAAAACACAGTTTGTGTGTTTAAGGATTGTTTTGCTTAAAAAAAAAAAAAAGA]


>consensus_5941#1 GGCGCGCGGCCCCGGCCCGTTCGGCCTGCCNCCGCCGGCGGCGGCCAGCGACGGCGGGAT GCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATG ACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTT TCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGAGATGG TGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTC GGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACCCTATACTTGGG ATTTGATTGATTATCTTCTGGTTCCCCAGCTAATTAGGGTTTAGATCGATGGCGATTTGA TGATCGTCTGATTCAAAGTTTATTTCTTTCGAAATAGAGGTACAAACTGAAGGATTATTT GTTTTTTTTTGCAAAACACAGTTTGTGTGTTTAAGGATTGTTTTGCTTAAAAAAAAAAAA AAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5941#0      ATGCAGGCGGAGAATGGCGACGACGGGTCGTCGGCGTCGCCGCGGTGGACGTACTTCCCG 60
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      AAGATCGCCGGAGACATGGCGAGGGAAGGGAGGGTGATGGAGGTGCTGGACAGGCGGGTG 120
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      GTGGAGTCCGGCGAGGCGGTGGAGGAGGCGGCGGTGCGGAGGCTGGTCCACGTGGCGCTG 180
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      TGGTGCGCGCAGGAGAAGGCGGNGGCGCGCCCCACCATGGCGCGCGTGGTGGAGATGCTC 240
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      GAGGGGCGTGGCGCCGCCGCGGAGGCCGTGGAGGCGCCGCCGCCGTCGGACATGATCGTC 300
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      GTCGACCTCCTCGCGCTCGACCCGGCGGCGCGCGGCCCCGGCCCGTTCGGCCTGCCGCCG 360
consensus_5941#1      --------------------------GGCGCGCGGCCCCGGCCCGTTCGGCCTGCCNCCG 34
                                                ****************************** ***

consensus_5941#0      CCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTC 420
consensus_5941#1      CCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTC 94
                      ************************************************************

consensus_5941#0      GCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGG 480
consensus_5941#1      GCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGG 154
                      ************************************************************

consensus_5941#0      AGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTT 540
consensus_5941#1      AGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTT 214
                      ************************************************************

consensus_5941#0      GGATGAAGCACGTGCGGACGANATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAA 600
consensus_5941#1      GGATGAAGCACGTGCGGACGAGATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAA 274
                      ********************* **************************************

consensus_5941#0      CCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGAC 660
consensus_5941#1      CCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGAC 334
                      ************************************************************

consensus_5941#0      GTGAGTCCAGCAACACTATACTTGGGATTTAAAAAAAAAAAAAAAAAAAAAAA------- 713
consensus_5941#1      GTGAGTCCAGCAACCCTATACTTGGGATTTGATTGATTATCTTCTGGTTCCCCAGCTAAT 394
                      ************** *************** *   *  *                     

consensus_5941#0      ------------------------------------------------------------
consensus_5941#1      TAGGGTTTAGATCGATGGCGATTTGATGATCGTCTGATTCAAAGTTTATTTCTTTCGAAA 454
                                                                                  

consensus_5941#0      ------------------------------------------------------------
consensus_5941#1      TAGAGGTACAAACTGAAGGATTATTTGTTTTTTTTTGCAAAACACAGTTTGTGTGTTTAA 514
                                                                                  

consensus_5941#0      ------------------------------
consensus_5941#1      GGATTGTTTTGCTTAAAAAAAAAAAAAAGA 544
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)