These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2146 fasta sequence [AGCGGCGCCGGCGGCTCCGGCGGCGCTGAGACTGAGAGCGCACCACTCCGCAGCCACAGGCGGACCGGATCGACGATGCCTGCGGCCTCCGCCGCCGTCCCAGCGAGGCTGAAGCGGGAGGACTACCCACGCACCAAGCACGACTCCCTCTTCTCCCCATGGAAGGTTCTTGTCGGGCCGTCGGACTGGGAGGACCACGCCGCCGGCAAGGAAGGGATCCAGAGGTACAGGGTGCTCAACCTGCCGGAGAACTTCCCTGGCCTCTACGAGCTGGGCGTCGCGAGGGCCTCCGACGAGGGTATCAGGGCGGCTCGGCGGTGGAATGGATCCGGTGGTGGTGGCGTCGTCGTCGTGTACCTCGGGCAGGCCGACAGCGTCAGGGCGAGGCTCCAGCAGTACGGCCGGACGGGATCGCACTTGGACGCCGGGAACCCACCGCCGTCCGCCGGCGAAGCGGAGACGAATACGCGGGCGACGGGGAATGGGTTGTTCAGGGAAGTTTTCGTCAGAGGCTACTCCTTGGTGTTCCGATGTGCTCTGATGGGTAACAAACAAGAAGCTGAGAAGACTGAGGCTCGGCTGCTTAGAGTGTTTGATTACGCATGGAACAAGCTTCAGAACGGTGGTCTTCGCCGTGAAGAAATACTTATCAAGTTAGAACAAGGGGCAGTCAACAATAGATCATCTCTGCTTAGCAGAGTACGGCACTTCAAACAGGAAGTGTTCAGAGAGAAAGCAGGTATAAAGATAAGCAGAAATGGGTCTGTTGATGTCTCATCTGGCATTATGAAAAATATGCTCCCAAGAATTCGAACATTTGTTGGCTTCAGACCTCAGCTAGTTAACTCTGGTGACAATGTTGACAAGGAAATTGGCATTCGCTGG-AAAATACATCTGAAGGTAACAGTTATGGCAAACAAGCACGTCGAAGTTCTGAAGGATACAAAGTCAAAAGAGTCAATGTTGTAAAACGAAGAACTATGCCAGAACAAGATTCTAACGATGTTTGTGGAGTGATGCTGGAAGATGGCTCCTCTTGTCTTGACCATCCAGTACAAGGAAGGAAGAGGTGTGAATTACACAAAGGTAGAAGACTAGGAAGAATCACAGTCAATCCTAAAGGCTCCTCTTGTAGCTATTCTTGCCAAGTTGAGATTCCAGTTGTTGAATCCATATCTCCACTAACTGAAAATGAAAGCGAGTCAGATCAAGCACAGCAAACCAGTGAACTCCTCTCCAAATTTTTGCCAGCAACAGTGAAAAAATCATCAAGACCATGGTATAGCTTTGAAGCGAAAGAAATAAAAACTGGAGAAGCTCCTATAGAAGATGGAAAACAGGAAA-CCTCTGAGGTCATTGATATCTGTGAAGCC-AAAAAGAGTGACAACTCTG-CCTGCACCAACAAAGTAATTTCAGGAAGTAAAAAATGTCAGCTGCATAATGGTTGC-AAAGCAGAAGAG-TTTGTTTCATCTCGAGTCA-TTGA-TTTGCTCCAGAAT-GAAGAAAA-GGTCAAAAGCATGACAGTTGACAAGCTCAGTGGGGAGGAGATTTCTCATGGTAAATATCAGTCCCAAGAGAATCAGCCTTCCGGAAGAATGTGGTTTGAGCTGATCAAATTGCAGAATCCTACCAGCACACTGTCATCCAAAGGCCAGGGACGTCAGAAAAGAGTGACAGGCAATGTCGCAGCTATCTGTGAAGCGTTGACGGACAACAGATGCCGTGAAACAATACCAATGGCAGGAAGAGAAAGATGCGATGCGCATGAAGGAATAAAGGTCACCGATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAGCTTCGGATTGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGCATAAAGGCCAAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGATGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAGTAAACCAAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGTAAACCAAAATAGACAGTCAAACAAACCATGTAACTTGATACAACTTTTTTTAGGGACTCAACCT] [+] EMBL AK102792 [AGCGGCGCCGGCGGCTCCGGCGGCGCTGAGACTGAGAGCGCACCACTCCGCAGCCACAGGCGGACCGGATCGACGATGCCTGCGGCCTCCGCCGCCGTCCCAGCGAGGCTGAAGCGGGAGGACTACCCACGCACCAAGCACGACTCCCTCTTCTCCCCATGGAAGGTTCTTGTCGGGCCGTCGGACTGGGAGGACCACGCCGCCGGCAAGGAAGGGATCCAGAGGTACAGGGTGCTCAACCTGCCGGAGAACTTCCCTGGCCTCTACGAGCTGGGCGTCGCGAGGGCCTCCGACGAGGGTATCAGGGCGGCTCGGCGGTGGAATGGATCCGGTGGTGGTGGCGTCGTCGTCGTGTACCTCGGGCAGGCCGACAGCGTCAGGGCGAGGCTCCAGCAGTACGGCCGGACGGGATCGCACTTGGACGCCGGGAACCCACCGCCGTCCGCCGGCGAAGCGGAGACGAATACGCGGGCGACGGGGAATGGGTTGTTCAGGGAAGTTTTCGTCAGAGGCTACTCCTTGGTGTTCCGATGTGCTCTGATGGGTAACAAACAAGAAGCTGAGAAGACTGAGGCTCGGCTGCTTAGAGTGTTTGATTACGCATGGAACAAGCTTCAGAACGGTGGTCTTCGCCGTGAAGAAATACTTATCAAGTTAGAACAAGGGGCAGTCAACAATAGATCATCTCTGCTTAGCAGAGTACGGCACTTCAAACAGGAAGTGTTCAGAGAGAAAGCAGGTATAAAGATAAGCAGAAATGGGTCTGTTGATGTCTCATCTGGCATTATGAAAAATATGCTCCCAAGAATTCGAACATTTGTTGGCTTCAGACCTCAGCTAGTTAACTCTGGTGACAATGTTGACAAGGAAATTGGCATTCGCTGG AAAATACATCTGAAGGTAACAGTTATGGCAAACAAGCACGTCGAAGTTCTGAAGGATACAAAGTCAAAAGAGTCAATGTTGTAAAACGAAGAACTATGCCAGAACAAGATTCTAACGATGTTTGTGGAGTGATGCTGGAAGATGGCTCCTCTTGTCTTGACCATCCAGTACAAGGAAGGAAGAGGTGTGAATTACACAAAGGTAGAAGACTAGGAAGAATCACAGTCAATCCTAAAGGCTCCTCTTGTAGCTATTCTTGCCAAGTTGAGATTCCAGTTGTTGAATCCATATCTCCACTAACTGAAAATGAAAGCGAGTCAGATCAAGCACAGCAAACCAGTGAACTCCTCTCCAAATTTTTGCCAGCAACAGTGAAAAAATCATCAAGACCATGGTATAGCTTTGAAGCGAAAGAAATAAAAACTGGAGAAGCTCCTATAGAAGATGGAAAACAGGAAA CCTCTGAGGTCATTGATATCTGTGAAGCC AAAAAGAGTGACAACTCTG CCTGCACCAACAAAGTAATTTCAGGAAGTAAAAAATGTCAGCTGCATAATGGTTGC AAAGCAGAAGAG TTTGTTTCATCTCGAGTCA TTGA TTTGCTCCAGAAT GAAGAAAA GGTCAAAAGCATGACAGTTGACAAGCTCAGTGGGGAGGAGATTTCTCATGGTAAATATCAGTCCCAAGAGAATCAGCCTTCCGGAAGAATGTGGTTTGAGCTGATCAAATTGCAGAATCCTACCAGCACACTGTCATCCAAAGGCCAGGGACGTCAGAAAAGAGTGACAGGCAATGTCGCAGCTATCTGTGAAGCGTTGACGGACAACAGATGCCGTGAAACAATACCAATGGCAGGAAGAGAAAGATGCGATGCGCATGAAGGAATAAAGGTCACCGATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAGCTTCGGATTGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGCATAAAGGCCAAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGATGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAGTAAACCAAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGTAAACCAAAATAGACAGTCAAACAAACCATGTAACTTGATACAACTTTTTTTAGGGACTCAACCT] [+] EMBL CA764561 [ aaggggGACCTCAGCTAGTTAACTCTGGTGACAATGTTGACAAGGAAATTGGCATTCGCTGGAAAAATACATCTGAAGGTAACAGTTATGGCAAACAAGCACGTCGAAGCTCTGAAGGATACAAAGTCAAAAGAGTCAATGTTATAAAACGAAGAACTATGCCAGAACAAGATTCTAACGATGTTTGTGGAGTGATGCTGGAAGATGGCTCCTCTTGTCTTGACCATCCAGTACAGGGAAGGAAGAGGTGTGAATTACACAAAGGTAGAAGACTAGGAAGAATCACAGTCAATCCTAAAGGCTCCTCTTGTAGCTATTCTTGCCAAGTTGAGATTCCAGTTGTTGAATCCATATCTCCACTAACTGAAAATGAAAGCGAGTCAGATCAAGCACAGCAAACCAGNGAACTCCTCTCCAAATTTTTGCCAGAAACAGNGAAAAAATCATCAAGACCATGGTATAGCTTTGAAGCGANAGAAATAAAAACTGGAGAAGCTTCTATAGAAGATGGAAAACAGGAAACCCTCTGAGGTCATTGATATCTGNGAAGCCAAAAAAGAGTGACAACTCTGCCCTGCACCAACAAAGTAATTTCAGGAAGNNAAAAATGGCAGCTGCTAAATGGNTGCNAAACNNGAAGAGTTTTGTTTCATCTCNAGCCANTGGATTTTGCTCCCGAATGGAAGAAAAGGGTCAA ] consensusID : consensus_5944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CTGATCAACTTGCAGAATCCTACCAGCACCTGGTCATCCACAAGGCCACGGGAACTGTCTNAANGTGGTNACAGNCAATTTGTGCACAGNATAGTTGTGAANGCTTTGTGCGGAACAAACCAANGTNCCCGTGTGACCAATCCCAATGGCCAGGAAGAGAAAAATCCAATGCCCCATGAAGGAATAAAGNTCACCGATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAGCTTCGGATGGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGCATAAAGGCCNAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGATGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAGTAAACCCAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGTAAACCCAAATAGACAGTCAAACAAACCACTGTAACTTGATACAACTTTTTTTAGGGACTCAACCTCTATTACCTGAACATCGCGCATTTGCCATCTAATGCACCATAGGGCATTGGTTATAAACTTGTGCTTTCAAAGTGCAAAGAGATACACTCTTCTTGGTTAAAAAAAAAAAAAAAAAAAA] [+] EMBL BM419305 [CTGATCAACTTGCAGAATCCTACCAGCACCTGGTCATCCACAAGGCCACGGGAACTGTCTNAANGTGGTNACAGNCAATTTGTGCACAGNATAGTTGTGAANGCTTTGTGCGGAACAAACCAANGTNCCCGTGTGACCAATCCCAATGGCCAGGAAGAGAAAAATCCAATGCCCCATGAAGGAATAAAGNTCACCGATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAGCTTCGGATGGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGCATAAAGGCCNAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGATGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAGTAAACCCAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGTAAACCCAAATAGACAGTCAAACAAACCACTGTAACTTGATACAACTTTTTTTAGGGACTCAACCTCTATTACCTGAACATCGCGCATTTGCCATCTAATGCACCATAGGGCATTGGTTATAAACTTGTGCTTTCAAAGTGCAAAGAGATACACTCTTCTTGGTTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5944#0 AGCGGCGCCGGCGGCTCCGGCGGCGCTGAGACTGAGAGCGCACCACTCCGCAGCCACAGG 60 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 CGGACCGGATCGACGATGCCTGCGGCCTCCGCCGCCGTCCCAGCGAGGCTGAAGCGGGAG 120 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 GACTACCCACGCACCAAGCACGACTCCCTCTTCTCCCCATGGAAGGTTCTTGTCGGGCCG 180 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 TCGGACTGGGAGGACCACGCCGCCGGCAAGGAAGGGATCCAGAGGTACAGGGTGCTCAAC 240 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 CTGCCGGAGAACTTCCCTGGCCTCTACGAGCTGGGCGTCGCGAGGGCCTCCGACGAGGGT 300 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 ATCAGGGCGGCTCGGCGGTGGAATGGATCCGGTGGTGGTGGCGTCGTCGTCGTGTACCTC 360 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 GGGCAGGCCGACAGCGTCAGGGCGAGGCTCCAGCAGTACGGCCGGACGGGATCGCACTTG 420 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 GACGCCGGGAACCCACCGCCGTCCGCCGGCGAAGCGGAGACGAATACGCGGGCGACGGGG 480 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 AATGGGTTGTTCAGGGAAGTTTTCGTCAGAGGCTACTCCTTGGTGTTCCGATGTGCTCTG 540 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 ATGGGTAACAAACAAGAAGCTGAGAAGACTGAGGCTCGGCTGCTTAGAGTGTTTGATTAC 600 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 GCATGGAACAAGCTTCAGAACGGTGGTCTTCGCCGTGAAGAAATACTTATCAAGTTAGAA 660 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 CAAGGGGCAGTCAACAATAGATCATCTCTGCTTAGCAGAGTACGGCACTTCAAACAGGAA 720 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 GTGTTCAGAGAGAAAGCAGGTATAAAGATAAGCAGAAATGGGTCTGTTGATGTCTCATCT 780 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 GGCATTATGAAAAATATGCTCCCAAGAATTCGAACATTTGTTGGCTTCAGACCTCAGCTA 840 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 GTTAACTCTGGTGACAATGTTGACAAGGAAATTGGCATTCGCTGGAAAATACATCTGAAG 900 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 GTAACAGTTATGGCAAACAAGCACGTCGAAGTTCTGAAGGATACAAAGTCAAAAGAGTCA 960 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 ATGTTGTAAAACGAAGAACTATGCCAGAACAAGATTCTAACGATGTTTGTGGAGTGATGC 1020 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 TGGAAGATGGCTCCTCTTGTCTTGACCATCCAGTACAAGGAAGGAAGAGGTGTGAATTAC 1080 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 ACAAAGGTAGAAGACTAGGAAGAATCACAGTCAATCCTAAAGGCTCCTCTTGTAGCTATT 1140 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 CTTGCCAAGTTGAGATTCCAGTTGTTGAATCCATATCTCCACTAACTGAAAATGAAAGCG 1200 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 AGTCAGATCAAGCACAGCAAACCAGTGAACTCCTCTCCAAATTTTTGCCAGCAACAGTGA 1260 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 AAAAATCATCAAGACCATGGTATAGCTTTGAAGCGAAAGAAATAAAAACTGGAGAAGCTC 1320 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 CTATAGAAGATGGAAAACAGGAAACCTCTGAGGTCATTGATATCTGTGAAGCCAAAAAGA 1380 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 GTGACAACTCTGCCTGCACCAACAAAGTAATTTCAGGAAGTAAAAAATGTCAGCTGCATA 1440 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 ATGGTTGCAAAGCAGAAGAGTTTGTTTCATCTCGAGTCATTGATTTGCTCCAGAATGAAG 1500 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 AAAAGGTCAAAAGCATGACAGTTGACAAGCTCAGTGGGGAGGAGATTTCTCATGGTAAAT 1560 consensus_5944#1 ------------------------------------------------------------ consensus_5944#0 ATCAGTCCCAAGAGAATCAGCCTTCCGGAAGAATGTGGTTTGAGCTGATCAAATTGCAGA 1620 consensus_5944#1 --------------------------------------------CTGATCAACTTGCAGA 16 ******** ******* consensus_5944#0 ATCCTACCAGCACACTGTCATCCA-AAGGCCAGGGA---CGTCAGAAAAGAGTGACAGGC 1676 consensus_5944#1 ATCCTACCAGCACCTGGTCATCCACAAGGCCACGGGAACTGTCTNAANGTGGTNACAGNC 76 ************* ******** ******* ** *** ** ** **** * consensus_5944#0 AATGT---CGCAGC-TATCTGTGAAGCGTT-------GACGGACAACAGATGCCGTGAAA 1725 consensus_5944#1 AATTTGTGCACAGNATAGTTGTGAANGCTTTGTGCGGAACAAACCAANGTNCCCGTGTGA 136 *** * * *** ** ****** ** ** ** * * ***** * consensus_5944#0 C-AATACCAATGGC-AGGAAGAGAAAGATGCGATGCGC-ATGAAGGAATAAAGGTCACCG 1782 consensus_5944#1 CCAATCCCAATGGCCAGGAAGAGAAAAATCCAATGCCCCATGAAGGAATAAAGNTCACCG 196 * *** ******** *********** ** * **** * ************** ****** consensus_5944#0 ATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAG 1842 consensus_5944#1 ATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAG 256 ************************************************************ consensus_5944#0 CTTCGGATTGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGC 1902 consensus_5944#1 CTTCGGATGGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGC 316 ******** *************************************************** consensus_5944#0 ATAAAGGCCAAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGA 1962 consensus_5944#1 ATAAAGGCCNAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGA 376 ********* ************************************************** consensus_5944#0 TGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAG 2022 consensus_5944#1 TGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAG 436 ************************************************************ consensus_5944#0 TAAACCAAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGT 2082 consensus_5944#1 TAAACCCAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGT 496 ****** ***************************************************** consensus_5944#0 AAACCAAAATAGACAGTCAAACAAACCA-TGTAACTTGATACAACTTTTTTTAGGGACTC 2141 consensus_5944#1 AAACCCAAATAGACAGTCAAACAAACCACTGTAACTTGATACAACTTTTTTTAGGGACTC 556 ***** ********************** ******************************* consensus_5944#0 AACCT------------------------------------------------------- 2146 consensus_5944#1 AACCTCTATTACCTGAACATCGCGCATTTGCCATCTAATGCACCATAGGGCATTGGTTAT 616 ***** consensus_5944#0 ------------------------------------------------------------ consensus_5944#1 AAACTTGTGCTTTCAAAGTGCAAAGAGATACACTCTTCTTGGTTAAAAAAAAAAAAAAAA 676 consensus_5944#0 ---- consensus_5944#1 AAAA 680 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||