These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1550 fasta sequence [TTGCTCCCGGAAATTCTCTCCCGAACCCGATTTTTTTATTATTCCCCCCCGATATCCTGATCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTTGAAGCGGAGGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCCTCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTCTCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTATAGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATAAGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGAGACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGACTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCGTCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCGGAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAATGACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTTTCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAATGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGCATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCCTGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGACTGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGAGAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTACCTGCTAAGCATGTTTGAAAGTTTTTATTTGTCTACAATCTCAAACTCCCCATTTAGGGTTTTAGGTAGTCTATAGTCTCATATTTGGGAGGTGATGGATAGCTTTGAATTCAAGAGACTCCTTTTCCCCCTAAAAAGCAGTGAGGCAACTGTGCATAAGAAACAGTGAAATAGTTTGAGCATTTTTTTGCAGCATGTTAGTTTAGCTAAGAGCCAACTACAGATAACATATGTTTCAATATGAGGAGTATAAACAGACCCTTTTAAATTTTCCAATGCATATACGTGTTGTTATGCAAGTTTCTGTGAAAACAACACTATATCACCATAGCCATGTCATTTCCCATGTTCTCTTTTACAAGGATAACAGAGAGACTAGAATCAGTCTAGGAACAGTTGTTAATCCTTATATAAGCTCAATTATCAGTACTTGTACCATATTCATATACAGTGCAAGTTGCAAAATACATGGAGG] [+] EMBL AK106362 [TTGCTCCCGGAAATTCTCTCCCGAACCCGATTTTTTTATTATTCCCCCCCGATATCCTGATCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTTGAAGCGGAGGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCCTCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTCTCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTATAGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATAAGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGAGACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGACTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCGTCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCGGAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAATGACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTTTCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAATGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGCATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCCTGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGACTGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGAGAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTACCTGCTAAGCATGTTTGAAAGTTTTTATTTGTCTACAATCTCAAACTCCCCATTTAGGGTTTTAGGTAGTCTATAGTCTCATATTTGGGAGGTGATGGATAGCTTTGAATTCAAGAGACTCCTTTTCCCCCTAAAAAGCAGTGAGGCAACTGTGCATAAGAAACAGTGAAATAGTTTGAGCATTTTTTTGCAGCATGTTAGTTTAGCTAAGAGCCAACTACAGATAACATATGTTTCAATATGAGGAGTATAAACAGACCCTTTTAAATTTTCCAATGCATATACGTGTTGTTATGCAAGTTTCTGTGAAAACAACACTATATCACCATAGCCATGTCATTTCCCATGTTCTCTTTTACAAGGATAACAGAGAGACTAGAATCAGTCTAGGAACAGTTGTTAATCCTTATATAAGCTCAATTATCAGTACTTGTACCATATTCATATACAGTGCAAGTTGCAAAATACATGGAGG] consensusID : consensus_5945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1490 fasta sequence [CCCCCGATATCCTGATCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTCGAAGCGGAGGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCCTCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTCTCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTATAGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATAAGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGAGACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGACTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCGTCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCGGAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAATGACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTTTCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAATGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGCATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCCTGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGACTGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGAGAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTATCAGAATCACAGAATCCCAAATCTGAGCAAGATGTGGATGTTGATTATAACAGCTTGTACTCGAGGCAGGACTTTATAGAGGGCGAGGACGGTGAGCTTTCATGGTTTAATGCTGGTGTCCGAGTTGGGGTTGGGATTGGCCTTGGTATTTGTGTGGGTGTTGGATTGGGTGTTGGCCTGCTGGTCCGGACGTACCAAAGCACCAGTAGGAACTTCAGGCGGCGATTGCCCTGATGGCCAGACCACCCCATGAATGTAGATGTGTCTTTATCTTGTTCTGTAGGGAACTAACTGTCCAACCATCTTTCCTGTTCATGC-TTGTGGTAGATAT-AAGTGAGGC-TTTTTGTTCTTCGATTCTGCAGTCACTCTGGAATCTGTTGCTCTC-TTGTCTGCAA-TGCCAATCA-TTTTTGCTCCCTTGAGA-TGTAAATATTAGTCTGTATGGCAAATAAAGAGTCGAATC] [+] EMBL AK066707 [CCCCCGATATCCTGATCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTCGAAGCGGAGGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCCTCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTCTCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTATAGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATAAGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGAGACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGACTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCGTCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCGGAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAATGACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTTTCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAATGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGCATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCCTGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGACTGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGAGAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTATCAGAATCACAGAATCCCAAATCTGAGCAAGATGTGGATGTTGATTATAACAGCTTGTACTCGAGGCAGGACTTTATAGAGGGCGAGGACGGTGAGCTTTCATGGTTTAATGCTGGTGTCCGAGTTGGGGTTGGGATTGGCCTTGGTATTTGTGTGGGTGTTGGATTGGGTGTTGGCCTGCTGGTCCGGACGTACCAAAGCACCAGTAGGAACTTCAGGCGGCGATTGCCCTGATGGCCAGACCACCCCATGAATGTAGATGTGTCTTTATCTTGTTCTGTAGGGAACTAACTGTCCAACCATCTTTCCTGTTCATGC TTGTGGTAGATAT AAGTGAGGC TTTTTGTTCTTCGATTCTGCAGTCACTCTGGAATCTGTTGCTCTC TTGTCTGCAA TGCCAATCA TTTTTGCTCCCTTGAGA TGTAAATATTAGTCTGTATGGCAAATAAAGAGTCGAATC] [+] EMBL OSC29161 [ AGAGTTAAATGAGGACTCTTTGCAGGTATCAGAATCACAGAATCCCAAATCTGAGCAAGATGTGGATGTTGATTATAACAGCTTGTACTCGAGGCAGGACTTTATAGAGGGCGAGGACGGTGAGCTTTCATGGTTTAATGCTGGTGTCCGAGTTGGGGTTGGGATTGGCCTTGGTATTTGTGTNGGTGTTGGATTGGGTGTTGGCCTACTGGTCCGGACGTACCAAAGCACCAGTAGGAACTTCAGGCGGCGATTGCCCTNATGGCCAGACCACCCCATGAATGTAGATGTGTCTTTATCTTGTTCTGTAGGGAACTAACTGTCCAACCATCTTTCCTGTTCATGCTTTTTNGTAGATATAAAGTNAGGCTTTTTTGTTCTTCGTTTCTGCAGTCACTCTGGAATCTGTTGCTCTCTTTGTCTGCAANTGCCAATCANTTTTTGCTCCCTTGAGATTGTAAAaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5945#0 TTGCTCCCGGAAATTCTCTCCCGAACCCGATTTTTTTATTATTCCCCCCCGATATCCTGA 60 consensus_5945#1 ---------------------------------------------CCCCCGATATCCTGA 15 *************** consensus_5945#0 TCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTTGAAGCGGA 120 consensus_5945#1 TCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTCGAAGCGGA 75 *************************************************** ******** consensus_5945#0 GGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCC 180 consensus_5945#1 GGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCC 135 ************************************************************ consensus_5945#0 TCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTC 240 consensus_5945#1 TCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTC 195 ************************************************************ consensus_5945#0 TCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTAT 300 consensus_5945#1 TCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTAT 255 ************************************************************ consensus_5945#0 AGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATA 360 consensus_5945#1 AGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATA 315 ************************************************************ consensus_5945#0 AGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGA 420 consensus_5945#1 AGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGA 375 ************************************************************ consensus_5945#0 GACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGA 480 consensus_5945#1 GACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGA 435 ************************************************************ consensus_5945#0 CTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCG 540 consensus_5945#1 CTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCG 495 ************************************************************ consensus_5945#0 TCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCG 600 consensus_5945#1 TCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCG 555 ************************************************************ consensus_5945#0 GAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAAT 660 consensus_5945#1 GAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAAT 615 ************************************************************ consensus_5945#0 GACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTT 720 consensus_5945#1 GACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTT 675 ************************************************************ consensus_5945#0 TCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAA 780 consensus_5945#1 TCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAA 735 ************************************************************ consensus_5945#0 TGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGC 840 consensus_5945#1 TGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGC 795 ************************************************************ consensus_5945#0 ATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCC 900 consensus_5945#1 ATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCC 855 ************************************************************ consensus_5945#0 TGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGAC 960 consensus_5945#1 TGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGAC 915 ************************************************************ consensus_5945#0 TGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGA 1020 consensus_5945#1 TGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGA 975 ************************************************************ consensus_5945#0 GAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTACCTGC 1080 consensus_5945#1 GAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTATCAGA 1035 ******************************************************* * * consensus_5945#0 TAAGCATGTTTGAAAGTTTTTATTTGTCTACAATCTCAAACTCCCCATTTAGGGTTTTAG 1140 consensus_5945#1 ATCACAGAATCCCAAATCTGAGCAAGATGTGGATGTTGATTATAACAGCTTGTACTCGAG 1095 ** * ** * * * ** * * ** * * * ** consensus_5945#0 GTAGTCTATAGTCTCATATTTGGGAGGTGATGGATAGCTTTGAATTCAAGAGACTCCTTT 1200 consensus_5945#1 GCAG-----GACTTTATAGA-GGGCGAGGACGGTGAGCTTTCATGGTTTAATGCTGGTGT 1149 * ** * *** *** * ** ** ****** * * ** * * consensus_5945#0 TCCCCCTAAAAAGCAGTGAGGCAACTGTGCATAAGAAACAGTGAAATAGTTTGAGCATTT 1260 consensus_5945#1 CCGAGTTGGGGTTGGGATTGGCCTTGGTATTTGTGTGGGTGT----TGGATTGGGTGTTG 1205 * * * *** ** * * ** * * *** * ** consensus_5945#0 TTTTGCAGCATGTTAGTTTAGCTAAGAGCCAACTACAGATAACATATGTTTCAATATGAG 1320 consensus_5945#1 GCCTGCTG-GTCCGGACGTACCAAAGCACCAG---TAGGAACTTCAGGCGGCGAT-TGCC 1260 *** * * ** * *** *** ** * * * * ** ** consensus_5945#0 GAGTATAAACAGACCCTTTTAAATTTTCCAATGCATATACGTGTTGTTATGCAAGTTTCT 1380 consensus_5945#1 CTG-ATGGCCAGACCACCCCATGAATGTAGATGTGTCTTTATCTTGTTCTGTAGGGAACT 1319 * ** ****** * * *** * * * ***** ** * * ** consensus_5945#0 GTGAAAACAACACTATATCAC---CATAGCCATGTCATTTCCCA-TGTTCTCTTTTACAA 1436 consensus_5945#1 AACTGTCCAACCATCTTTCCTGTTCATGCTTGTGGTAGATATAAGTGAGGCTTTTTGTT- 1378 **** * * ** *** ** * * * ** **** consensus_5945#0 GGATAACAGAGAGACTAGAATCAGTCTAGGAACAGTTGTTAATCCTTATATAAGCTCAAT 1496 consensus_5945#1 ------CTTCGATTCTGCAGTCACTCTGGAATCTGTTGCTCTCTTGTCTGCAATGCCAAT 1432 * ** ** * *** *** * * * **** * * * ** **** consensus_5945#0 TATCAGTACTTGTACCATATTCATATAC-AGTGCAAGTTGCAAAATACATGGAGG--- 1550 consensus_5945#1 CATTTTTGCTCCCTTGAGATGTAAATATTAGTCTGTATGGCAAATAAAGAGTCGAATC 1490 ** * ** * ** * *** *** * ***** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||