cluster # 595

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Oryza sativa
cluster # 595 cluster # 595 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_595#0 length = 1621 sequences # 1

consensus_595#1 length = 188 sequences # 1

consensusID : consensus_595#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1621
fasta sequence

                              [TACAGATGGGGAGTGCAGTGGGTCTCTTGCTCAGGAGCCAAGTGACAAGCAGTTAAAAATTGCACGTGCTAGTGCTGCTGCTAGGGGAATTAAAAGTGTGGATGAGAGCTACTTCGGGTCGTATAGTTCATTTGGCATCCATAGAGAGATGCTTGGTGACAAAGTAAGAACAGAAGCTTACAGAGATGCCCTTTTAGGCAATCCTAGCCTCATGAATGGTGCAACTGTGCTCGATGTTGGTTGTGGCACGGGAATTCTAAGTCTTTTTGCAGCTAAGGCTGGTGCTTCTAGAGTTATTGCTGTTGACGGGAGTGCAAAGATGGTTTCTGTCGCTACTGAAATTGCAAAAAGTAATGGTTTTCTGTACGATGAAAATATGGAGATGCAACAAAAGCGAGATACTCAAGTGATAACTGTTGTTCATACCAAGGCTGAAGAGCTAAACCATAAAATACAAGTTCCATCGAATAAATTTGATGTTTTGGTGAGCGAATGGATGGGATATTGCCTACTCTATGAATCCATGCTCAGTTCAGTTCTATATGCACGCGATCATTTTCTAAAACCTGGAGGTGCTATTCTCCCAGATACTGCAACAATTTTTGGTGCTGGATTTGGGAAAGGTGGAACAAGCTTGCCATTTTGGGAAAATGTGTATGGCTTTGATATGTCATGTATTGGCAAAGAAGTGACAGGGAATTCAGCTAGATTTCCTGTTGTTGATATATTGGCTTCTGAAGATATTGTGACAGAGACAGCTGTTCTCAATTCCTTTGATCTGGCAACTATGAAGGAAAATGAAATGGATTTTACTTCAAGCTTTGAGCTGAGGCTCAGTGAAAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGCATTATATTATGGTTTGACACTGGCTTTACGAACCGATTCTGCAAGGAGAAGCCAGTCAACCTCTCCACCTCTCCTTTCTCCACACCGACTCACTGGTCTCAAACTATCTTCACCTTTGAAGAGCCCATCGCAATGGCAAAGGAGGAATCAGCCGTTGTCTCATCTGCGTCAGTTGGCACAGATGAGTGCCCAGCTGTGATGATCAGATCCCGCATCAGCATTGTGAGGGCCTCTGAGCACCGCAGCATAGACATATCGATTGAAACTACAGGAATCAGCTCAGATGGCAGGAAGCGTAGCTGGCCTGTTCAGATCTTCAACCTGTGAGCAAGGAGCCAAGGATACCTTTGGGTATAAATTTTGTTTCGTGCTTTGCTCCTCACTGGTTTTGAGCAAGGATACTACCCACAGCAAGTCTTAGCTTTTGATTGGGTCCTCAAATCTCAAGTTCTGTACGCTGAAACAGAACGGCATCCCCACTGAAGTTTTGTGCAATGGTGAGCCTGAAAACAGGCCAGATTGAAGCGCTGTGGAATGGTCAGGGTGAAAAAGTTCATGGGATCGAGACTGAGTTGCAGTTTTTTTTTGGCTATTTCTGCACGTGAACTGAAAGATATATCTTGTAGTGATGTTTGAGATATGTATCAGTATTTTACAATGATATCAGAATTCAGATTCATTTGGATACCAGTTCACTTCAGTTTCTGTAAGATGCTCGGTTGATGTGAACCTGAAGATCGC]

[+] EMBL AK105489             [TACAGATGGGGAGTGCAGTGGGTCTCTTGCTCAGGAGCCAAGTGACAAGCAGTTAAAAATTGCACGTGCTAGTGCTGCTGCTAGGGGAATTAAAAGTGTGGATGAGAGCTACTTCGGGTCGTATAGTTCATTTGGCATCCATAGAGAGATGCTTGGTGACAAAGTAAGAACAGAAGCTTACAGAGATGCCCTTTTAGGCAATCCTAGCCTCATGAATGGTGCAACTGTGCTCGATGTTGGTTGTGGCACGGGAATTCTAAGTCTTTTTGCAGCTAAGGCTGGTGCTTCTAGAGTTATTGCTGTTGACGGGAGTGCAAAGATGGTTTCTGTCGCTACTGAAATTGCAAAAAGTAATGGTTTTCTGTACGATGAAAATATGGAGATGCAACAAAAGCGAGATACTCAAGTGATAACTGTTGTTCATACCAAGGCTGAAGAGCTAAACCATAAAATACAAGTTCCATCGAATAAATTTGATGTTTTGGTGAGCGAATGGATGGGATATTGCCTACTCTATGAATCCATGCTCAGTTCAGTTCTATATGCACGCGATCATTTTCTAAAACCTGGAGGTGCTATTCTCCCAGATACTGCAACAATTTTTGGTGCTGGATTTGGGAAAGGTGGAACAAGCTTGCCATTTTGGGAAAATGTGTATGGCTTTGATATGTCATGTATTGGCAAAGAAGTGACAGGGAATTCAGCTAGATTTCCTGTTGTTGATATATTGGCTTCTGAAGATATTGTGACAGAGACAGCTGTTCTCAATTCCTTTGATCTGGCAACTATGAAGGAAAATGAAATGGATTTTACTTCAAGCTTTGAGCTGAGGCTCAGTGAAAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGCATTATATTATGGTTTGACACTGGCTTTACGAACCGATTCTGCAAGGAGAAGCCAGTCAACCTCTCCACCTCTCCTTTCTCCACACCGACTCACTGGTCTCAAACTATCTTCACCTTTGAAGAGCCCATCGCAATGGCAAAGGAGGAATCAGCCGTTGTCTCATCTGCGTCAGTTGGCACAGATGAGTGCCCAGCTGTGATGATCAGATCCCGCATCAGCATTGTGAGGGCCTCTGAGCACCGCAGCATAGACATATCGATTGAAACTACAGGAATCAGCTCAGATGGCAGGAAGCGTAGCTGGCCTGTTCAGATCTTCAACCTGTGAGCAAGGAGCCAAGGATACCTTTGGGTATAAATTTTGTTTCGTGCTTTGCTCCTCACTGGTTTTGAGCAAGGATACTACCCACAGCAAGTCTTAGCTTTTGATTGGGTCCTCAAATCTCAAGTTCTGTACGCTGAAACAGAACGGCATCCCCACTGAAGTTTTGTGCAATGGTGAGCCTGAAAACAGGCCAGATTGAAGCGCTGTGGAATGGTCAGGGTGAAAAAGTTCATGGGATCGAGACTGAGTTGCAGTTTTTTTTTGGCTATTTCTGCACGTGAACTGAAAGATATATCTTGTAGTGATGTTTGAGATATGTATCAGTATTTTACAATGATATCAGAATTCAGATTCATTTGGATACCAGTTCACTTCAGTTTCTGTAAGATGCTCGGTTGATGTGAACCTGAAGATCGC]




>consensus_595#0
TACAGATGGGGAGTGCAGTGGGTCTCTTGCTCAGGAGCCAAGTGACAAGCAGTTAAAAAT
TGCACGTGCTAGTGCTGCTGCTAGGGGAATTAAAAGTGTGGATGAGAGCTACTTCGGGTC
GTATAGTTCATTTGGCATCCATAGAGAGATGCTTGGTGACAAAGTAAGAACAGAAGCTTA
CAGAGATGCCCTTTTAGGCAATCCTAGCCTCATGAATGGTGCAACTGTGCTCGATGTTGG
TTGTGGCACGGGAATTCTAAGTCTTTTTGCAGCTAAGGCTGGTGCTTCTAGAGTTATTGC
TGTTGACGGGAGTGCAAAGATGGTTTCTGTCGCTACTGAAATTGCAAAAAGTAATGGTTT
TCTGTACGATGAAAATATGGAGATGCAACAAAAGCGAGATACTCAAGTGATAACTGTTGT
TCATACCAAGGCTGAAGAGCTAAACCATAAAATACAAGTTCCATCGAATAAATTTGATGT
TTTGGTGAGCGAATGGATGGGATATTGCCTACTCTATGAATCCATGCTCAGTTCAGTTCT
ATATGCACGCGATCATTTTCTAAAACCTGGAGGTGCTATTCTCCCAGATACTGCAACAAT
TTTTGGTGCTGGATTTGGGAAAGGTGGAACAAGCTTGCCATTTTGGGAAAATGTGTATGG
CTTTGATATGTCATGTATTGGCAAAGAAGTGACAGGGAATTCAGCTAGATTTCCTGTTGT
TGATATATTGGCTTCTGAAGATATTGTGACAGAGACAGCTGTTCTCAATTCCTTTGATCT
GGCAACTATGAAGGAAAATGAAATGGATTTTACTTCAAGCTTTGAGCTGAGGCTCAGTGA
AAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGCATTATATTATGGTTTGACAC
TGGCTTTACGAACCGATTCTGCAAGGAGAAGCCAGTCAACCTCTCCACCTCTCCTTTCTC
CACACCGACTCACTGGTCTCAAACTATCTTCACCTTTGAAGAGCCCATCGCAATGGCAAA
GGAGGAATCAGCCGTTGTCTCATCTGCGTCAGTTGGCACAGATGAGTGCCCAGCTGTGAT
GATCAGATCCCGCATCAGCATTGTGAGGGCCTCTGAGCACCGCAGCATAGACATATCGAT
TGAAACTACAGGAATCAGCTCAGATGGCAGGAAGCGTAGCTGGCCTGTTCAGATCTTCAA
CCTGTGAGCAAGGAGCCAAGGATACCTTTGGGTATAAATTTTGTTTCGTGCTTTGCTCCT
CACTGGTTTTGAGCAAGGATACTACCCACAGCAAGTCTTAGCTTTTGATTGGGTCCTCAA
ATCTCAAGTTCTGTACGCTGAAACAGAACGGCATCCCCACTGAAGTTTTGTGCAATGGTG
AGCCTGAAAACAGGCCAGATTGAAGCGCTGTGGAATGGTCAGGGTGAAAAAGTTCATGGG
ATCGAGACTGAGTTGCAGTTTTTTTTTGGCTATTTCTGCACGTGAACTGAAAGATATATC
TTGTAGTGATGTTTGAGATATGTATCAGTATTTTACAATGATATCAGAATTCAGATTCAT
TTGGATACCAGTTCACTTCAGTTTCTGTAAGATGCTCGGTTGATGTGAACCTGAAGATCG
C

consensusID : consensus_595#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence

                              [ATTTTACTTCAAGCTTTGAGCTGAGGCTACGTGAAAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGACTTATATTATGGTTTAGCACTGGCTTTACGAACAAGTTCTGCAAGGAGAAATGCCCAGTACACCTCTCCACCTCATATCCTTTCTCTTCACTCCATCCAGTCCTACCTTCTCAA]

[+] EMBL AA751224             [ATTTTACTTCAAGCTTTGAGCTGAGGCTACGTGAAAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGACTTATATTATGGTTTAGCACTGGCTTTACGAACAAGTTCTGCAAGGAGAAATGCCCAGTACACCTCTCCACCTCATATCCTTTCTCTTCACTCCATCCAGTCCTACCTTCTCAA]




>consensus_595#1
ATTTTACTTCAAGCTTTGAGCTGAGGCTACGTGAAAGTGGTGTATCACAATCTGGAGTAA
CCTGGTGCTATGGACTTATATTATGGTTTAGCACTGGCTTTACGAACAAGTTCTGCAAGG
AGAAATGCCCAGTACACCTCTCCACCTCATATCCTTTCTCTTCACTCCATCCAGTCCTAC
CTTCTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_595#0      TACAGATGGGGAGTGCAGTGGGTCTCTTGCTCAGGAGCCAAGTGACAAGCAGTTAAAAAT 60
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      TGCACGTGCTAGTGCTGCTGCTAGGGGAATTAAAAGTGTGGATGAGAGCTACTTCGGGTC 120
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      GTATAGTTCATTTGGCATCCATAGAGAGATGCTTGGTGACAAAGTAAGAACAGAAGCTTA 180
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      CAGAGATGCCCTTTTAGGCAATCCTAGCCTCATGAATGGTGCAACTGTGCTCGATGTTGG 240
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      TTGTGGCACGGGAATTCTAAGTCTTTTTGCAGCTAAGGCTGGTGCTTCTAGAGTTATTGC 300
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      TGTTGACGGGAGTGCAAAGATGGTTTCTGTCGCTACTGAAATTGCAAAAAGTAATGGTTT 360
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      TCTGTACGATGAAAATATGGAGATGCAACAAAAGCGAGATACTCAAGTGATAACTGTTGT 420
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      TCATACCAAGGCTGAAGAGCTAAACCATAAAATACAAGTTCCATCGAATAAATTTGATGT 480
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      TTTGGTGAGCGAATGGATGGGATATTGCCTACTCTATGAATCCATGCTCAGTTCAGTTCT 540
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      ATATGCACGCGATCATTTTCTAAAACCTGGAGGTGCTATTCTCCCAGATACTGCAACAAT 600
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      TTTTGGTGCTGGATTTGGGAAAGGTGGAACAAGCTTGCCATTTTGGGAAAATGTGTATGG 660
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      CTTTGATATGTCATGTATTGGCAAAGAAGTGACAGGGAATTCAGCTAGATTTCCTGTTGT 720
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      TGATATATTGGCTTCTGAAGATATTGTGACAGAGACAGCTGTTCTCAATTCCTTTGATCT 780
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      GGCAACTATGAAGGAAAATGAAATGGATTTTACTTCAAGCTTTGAGCTGAGGCTCAGTGA 840
consensus_595#1      --------------------------ATTTTACTTCAAGCTTTGAGCTGAGGCTACGTGA 34
                                               ****************************  ****

consensus_595#0      AAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGCATTATATTATGGTTTGACAC 900
consensus_595#1      AAGTGGTGTATCACAATCTGGAGTAACCTGGTGCTATGGACTTATATTATGGTTTAGCAC 94
                     ***************************************  **************  ***

consensus_595#0      TGGCTTTACGAACCGATTCTGCAAGGAGAAG---CCAGTCAACCTCTCCACCTCTCCTTT 957
consensus_595#1      TGGCTTTACGAACAAGTTCTGCAAGGAGAAATGCCCAGTACACCTCTCCACCTCATATCC 154
                     *************   **************    *****  *************   *  

consensus_595#0      CTCCACACCGACTCACTGGTCTCAAACTATCTTCACCTTTGAAGAGCCCATCGCAATGGC 1017
consensus_595#1      TTTCTCTTCACTCCATCCAGTCCTACCT-TCTCAA------------------------- 188
                      * * *  *    **       * * ** ***  *                         

consensus_595#0      AAAGGAGGAATCAGCCGTTGTCTCATCTGCGTCAGTTGGCACAGATGAGTGCCCAGCTGT 1077
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      GATGATCAGATCCCGCATCAGCATTGTGAGGGCCTCTGAGCACCGCAGCATAGACATATC 1137
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      GATTGAAACTACAGGAATCAGCTCAGATGGCAGGAAGCGTAGCTGGCCTGTTCAGATCTT 1197
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      CAACCTGTGAGCAAGGAGCCAAGGATACCTTTGGGTATAAATTTTGTTTCGTGCTTTGCT 1257
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      CCTCACTGGTTTTGAGCAAGGATACTACCCACAGCAAGTCTTAGCTTTTGATTGGGTCCT 1317
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      CAAATCTCAAGTTCTGTACGCTGAAACAGAACGGCATCCCCACTGAAGTTTTGTGCAATG 1377
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      GTGAGCCTGAAAACAGGCCAGATTGAAGCGCTGTGGAATGGTCAGGGTGAAAAAGTTCAT 1437
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      GGGATCGAGACTGAGTTGCAGTTTTTTTTTGGCTATTTCTGCACGTGAACTGAAAGATAT 1497
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      ATCTTGTAGTGATGTTTGAGATATGTATCAGTATTTTACAATGATATCAGAATTCAGATT 1557
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      CATTTGGATACCAGTTCACTTCAGTTTCTGTAAGATGCTCGGTTGATGTGAACCTGAAGA 1617
consensus_595#1      ------------------------------------------------------------
                                                                                 

consensus_595#0      TCGC 1621
consensus_595#1      ----