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Oryza sativa
cluster # 5956 cluster # 5956       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5956#0 length = 1608 sequences # 3  

consensusID : consensus_5956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1608
fasta sequence
                              [TCACATTTCCAACGCCGCGCCGCCCTCTTTCCTCTCCGACGACACCACGCCGTGTTCGCGAGTTCAGGAAGCTTCCACCGCCATGGCGGCGACCAGTGCTCCTCCAGTGGAGGTGCTCATCAACGACGCTTACCGCCAGATCCTGCTCCGCCTCCCGCCGACCGCCCCAAGCTGCTGTATCGCTTCGCCGCCGTCTGCAGGACATGGCGCAGCCTCCTCACCGACCCGGCCTTCCTCCGCCGCTACCGCGAGTTCCACGGGCTACCGCACCTGATCGGCTACGTCCACGACGGCGCTGATGGACGCGATCTGGTCGTTGCAAGGTTCGTGACCACCGCCGACACCACCTTCCGCCCGCGCGTGCCCGAGAAGGGCGTCGACCTCCACGTCCTCGACAGCCGCCACGGCCGCGTGATCTTCAGGAGGATTGGCAAGGGATGGCTCGATGAGTCGTCACTTATCATTTGGGACCCCGTCGCCGACCACCACCAGGAGGTGCCCCTGCCGGAGGCGTTCGCGCAGGAGGAATTCAACCTCACCGCCACCGTCCTCTGCGACGCCCTGGGATGCGACCACCTCGACTGCCACGGCGGCCCGTTCCGCGTGGTGTTCGTCGGCGTCCGCGACGAGGAGGGTGCGTCTGCCACTTCCGCCTTCAACTACACCTCCTCCTCCGGCTCCTGGACCGCTTCGCCCGCCGCCGCGGCCGCCGTCGCCGACGAGGATGACTGGGGATTTCGCATGCCCGCACCTAGCATCTTGGTGGGGGGGACCACGCTCTACTTCAGGAGCCCTGGGAGGATACTCCGGTACTGGTTCGGCGACGAGATGGAGCATCTGTCATACGTCGACATCCCGCCGTTCATCACTCAGGAGACACGCGGAACGGTGCTCATGCCGGCGGCGGACGGGAGGCTGAGCTTCGCGGCTATGTACGGCGACATGACGATCAGCTTCTGGGAAACCGAGGTCAGCGCTGACGGTGCTGTTGATTGGGTCCACACCCAGAACGCGCTCGTGAGCATCCCCCTACCTGGAGTCCTCATCGGCGCCGCCGCGAGCTTGCTTTTCGTCCGCACCGAGGACGGTGGGATCGTCAGCGTCCAAGTGGGGAACGGACGATTCCAGATGCTACCCCAGCCAGCCCCCCAGCGGCAGCAGATATCTGCTCTCATCCCCTTCATGAGCTTCTGTACCCCATGAGGTTTACATATCTCTGTCGCTAATACTACAAAGGTGGAGGCTGAAGTACAAGGAGGAGACATGGCTGATTTGGATGATTTTCAGAAGAAATCTTTACTGCGGACGACAGATTATGTGCCTGATGACTTGGGATAGTCGTGGTTTAGACTTTAGATGAGTAGTTTTCGTCTTGCTTTTGTTTCTCAGTAGAAAAAAAGGGGGTGCTTAGTTCCTTTGTGTTGTTCTGAACCCTGTCATGGAAGGCTGGTTGTTCCCAGCGCCTCTCTATTTTGGTTCTGCATTCTGCTTTCTTTTTGTTATTAAGTCGTTGTGAACTCTGAATGTTGTCTAGGCTGTCTCAATAAGGAGAGAATTCCTTATATGCCATTGAAATTTGGTCTCAAAAAAAAAAAAAAAAAAAAAAGG]

[+] EMBL AK106884             [TCACATTTCCAACGCCGCGCCGCCCTCTTTCCTCTCCGACGACACCACGCCGTGTTCGCGAGTTCAGGAAGCTTCCACCGCCATGGCGGCGACCAGTGCTCCTCCAGTGGAGGTGCTCATCAACGACGCTTACCGCCAGATCCTGCTCCGCCTCCCGCCGACCGCCCCAAGCTGCTGTATCGCTTCGCCGCCGTCTGCAGGACATGGCGCAGCCTCCTCACCGACCCGGCCTTCCTCCGCCGCTACCGCGAGTTCCACGGGCTACCGCACCTGATCGGCTACGTCCACGACGGCGCTGATGGACGCGATCTGGTCGTTGCAAGGTTCGTGACCACCGCCGACACCACCTTCCGCCCGCGCGTGCCCGAGAAGGGCGTCGACCTCCACGTCCTCGACAGCCGCCACGGCCGCGTGATCTTCAGGAGGATTGGCAAGGGATGGCTCGATGAGTCGTCACTTATCATTTGGGACCCCGTCGCCGACCACCACCAGGAGGTGCCCCTGCCGGAGGCGTTCGCGCAGGAGGAATTCAACCTCACCGCCACCGTCCTCTGCGACGCCCTGGGATGCGACCACCTCGACTGCCACGGCGGCCCGTTCCGCGTGGTGTTCGTCGGCGTCCGCGACGAGGAGGGTGCGTCTGCCACTTCCGCCTTCAACTACACCTCCTCCTCCGGCTCCTGGACCGCTTCGCCCGCCGCCGCGGCCGCCGTCGCCGACGAGGATGACTGGGGATTTCGCATGCCCGCACCTAGCATCTTGGTGGGGGGGACCACGCTCTACTTCAGGAGCCCTGGGAGGATACTCCGGTACTGGTTCGGCGACGAGATGGAGCATCTGTCATACGTCGACATCCCGCCGTTCATCACTCAGGAGACACGCGGAACGGTGCTCATGCCGGCGGCGGACGGGAGGCTGAGCTTCGCGGCTATGTACGGCGACATGACGATCAGCTTCTGGGAAACCGAGGTCAGCGCTGACGGTGCTGTTGATTGGGTCCACACCCAGAACGCGCTCGTGAGCATCCCCCTACCTGGAGTCCTCATCGGCGCCGCCGCGAGCTTGCTTTTCGTCCGCACCGAGGACGGTGGGATCGTCAGCGTCCAAGTGGGGAACGGACGATTCCAGATGCTACCCCAGCCAGCCCCCCAGCGGCAGCAGATATCTGCTCTCATCCCCTTCATGAGCTTCTGTACCCCATGAGGTTTACATATCTCTGTCGCTAATACTACAAAGGTGGAGGCTGAAGTACAAGGAGGAGACATGGCTGATTTGGATGATTTTCAGAAGAAATCTTTACTGCGGACGACAGATTATGTGCCTGATGACTTGGGATAGTCGTGGTTTAGACTTTAGATGAGTAGTTTTCGTCTTGCTTTTGTTTCTCAGTAGAAAAAAAGGGGGTGCTTAGTTCCTTTGTGTTGTTCTGAACCCTGTCATGGAAGGCTGGTTGTTCCCAGCGCCTCTCTATTTTGGTTCTGCATTCTGCTTTCTTTTTGTTATTAAGTCGTTGTGAACTCTGAATGTTGTCTAGGCTGTCTCAATAAGGAGAGAATTC                                                  ]
[+] EMBL CB662092             [                  GCCGCCCTCTTTCCTCTCCGACGACACCACGCCGTGTTCGCGAGTTCAGGAAGCTTCCACCGCCATGGCGGCGACCAGTGCTCCTCCAGTGGAGGTGCTCATCAACGACGCTTACCGCCAGATCCTGCTCCGCCTCCCGCCGACCGCCCCAAGCTGCTGTATCGCTTCGCCGCCGTCTGCAGGACATGGCGCAGCCTCCTCACCGACCCGGCCTTCCTCCGCCGCTACCGCGAGTTCCACGGGCTACCGCACCTGATCGGCTACGTCCACGACGGCGCTGATGGACGCGATCTGGTCGTTGCAAGGTTCGTGACCACCGCCGACACCACCTTCCGCCCGCGCGTGCCCGAGAAGGGCGTCGACCTCCACGTCCTCGACAGCCGCCACGGCCGCGTGATCTTCAGGAGGATTGGCAAGGGATGGCTCGATGAGTCGTCACTTATCATTTGGGACCCCGTCGCCGACCACCACCAGGAGGTGCCCCTGCCGGAGGCGTTCGCGCAGGAGGAATTCAACCTCACCGCCACCGTCCTCTGCGACGCCCTGGGATGCGACCACCTCGACTGCCACGGCGGCCCGTTCCGCGTGGTGTTCGTCGGCGTCCGCGACGAGGAGGGTGCGTCTGCCACTTCCGCCTTCAACTACACCTCCTCCTCCGGCTCCTGGACCGCTTCGCCCGCCGCCGCGGCCGCCGTCGCCGACGAGGATGACTGGGGATTTCGCATGCCCGCACCTAGCATCTTGGTGGGGGGGACCACGCTCTACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB662093             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGAGGCTGAGCTTCGCGGCTATGTACGGCGACATGACGATCAGCTTTTGGGAACCCGAGGTCAGCGCTGACGGTGCTGTTGATTGGGTCCACCCCCAGAACGCGCTCGTGAGCATCCCCCTCCCTGGAGTCCTCATCGGCGCCGCCGCGAGCTTGCTTTTCGTCCGCCCCGAGGACGGTGGGATCGTCAGCGTCCAAGTGGGGAACGGACGATTCCAGATGCTACCCCAGCCAGCCCCCCAGCGGCAGCAGATATTTGCTCTCATCCCCTTCATGAGCTTTTGTCCCCCATGAGGTTTACATATCTCTGTCGCTAATACTACAAAGGTGGAGGCTGAAGTCCAAGGAGGAGCCATGGCTGATTTGGATGATTTTCAGAAGAAATCTTTACTGCGGACGCCAGATTATGTCCCTGATGACTTGGGATAGTCGTGGTTTAGACTTTAGAGGAGTAGTTTTCGTCTTGCTTTTGTTTCTCAGTAGAAAAAAAGGGGGTGCTTAGTTCCTTTGTGTTGTTCGGACCCCTGTCATGGAAGGCTGGTTGTTCCCACCCCCTCTTTATTTGGGTTCGGCATTCTGCTTTCTTTTTGTTATTAAGTCGTTGTGAACTCTGAATGTTGTCTAGGCTGTCTCAATAAGGAGAGAATTCCTTATATGCCATTGAAATTTGGTCTCAAAAAAAAAAAAAAAAAAAAAAGG]


>consensus_5956#0 TCACATTTCCAACGCCGCGCCGCCCTCTTTCCTCTCCGACGACACCACGCCGTGTTCGCG AGTTCAGGAAGCTTCCACCGCCATGGCGGCGACCAGTGCTCCTCCAGTGGAGGTGCTCAT CAACGACGCTTACCGCCAGATCCTGCTCCGCCTCCCGCCGACCGCCCCAAGCTGCTGTAT CGCTTCGCCGCCGTCTGCAGGACATGGCGCAGCCTCCTCACCGACCCGGCCTTCCTCCGC CGCTACCGCGAGTTCCACGGGCTACCGCACCTGATCGGCTACGTCCACGACGGCGCTGAT GGACGCGATCTGGTCGTTGCAAGGTTCGTGACCACCGCCGACACCACCTTCCGCCCGCGC GTGCCCGAGAAGGGCGTCGACCTCCACGTCCTCGACAGCCGCCACGGCCGCGTGATCTTC AGGAGGATTGGCAAGGGATGGCTCGATGAGTCGTCACTTATCATTTGGGACCCCGTCGCC GACCACCACCAGGAGGTGCCCCTGCCGGAGGCGTTCGCGCAGGAGGAATTCAACCTCACC GCCACCGTCCTCTGCGACGCCCTGGGATGCGACCACCTCGACTGCCACGGCGGCCCGTTC CGCGTGGTGTTCGTCGGCGTCCGCGACGAGGAGGGTGCGTCTGCCACTTCCGCCTTCAAC TACACCTCCTCCTCCGGCTCCTGGACCGCTTCGCCCGCCGCCGCGGCCGCCGTCGCCGAC GAGGATGACTGGGGATTTCGCATGCCCGCACCTAGCATCTTGGTGGGGGGGACCACGCTC TACTTCAGGAGCCCTGGGAGGATACTCCGGTACTGGTTCGGCGACGAGATGGAGCATCTG TCATACGTCGACATCCCGCCGTTCATCACTCAGGAGACACGCGGAACGGTGCTCATGCCG GCGGCGGACGGGAGGCTGAGCTTCGCGGCTATGTACGGCGACATGACGATCAGCTTCTGG GAAACCGAGGTCAGCGCTGACGGTGCTGTTGATTGGGTCCACACCCAGAACGCGCTCGTG AGCATCCCCCTACCTGGAGTCCTCATCGGCGCCGCCGCGAGCTTGCTTTTCGTCCGCACC GAGGACGGTGGGATCGTCAGCGTCCAAGTGGGGAACGGACGATTCCAGATGCTACCCCAG CCAGCCCCCCAGCGGCAGCAGATATCTGCTCTCATCCCCTTCATGAGCTTCTGTACCCCA TGAGGTTTACATATCTCTGTCGCTAATACTACAAAGGTGGAGGCTGAAGTACAAGGAGGA GACATGGCTGATTTGGATGATTTTCAGAAGAAATCTTTACTGCGGACGACAGATTATGTG CCTGATGACTTGGGATAGTCGTGGTTTAGACTTTAGATGAGTAGTTTTCGTCTTGCTTTT GTTTCTCAGTAGAAAAAAAGGGGGTGCTTAGTTCCTTTGTGTTGTTCTGAACCCTGTCAT GGAAGGCTGGTTGTTCCCAGCGCCTCTCTATTTTGGTTCTGCATTCTGCTTTCTTTTTGT TATTAAGTCGTTGTGAACTCTGAATGTTGTCTAGGCTGTCTCAATAAGGAGAGAATTCCT TATATGCCATTGAAATTTGGTCTCAAAAAAAAAAAAAAAAAAAAAAGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)