These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5958#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1995 fasta sequence [GGAGCGAGCGTGCAAGGAAGAAGAAGAAGAGGCATCGGCATCGCGTCGGGAAGGCCCCCCATGGATATGGATCCTCCCACCAATAACCCTAGCCCCCCTGGTCCCCCCGACTCCCCGCCGCCGGAGAAGGGGCTCGCCTCCCTCTCCCTCCGCACCTCTCACCTCCCTCCCGACTTCGAGATCCACGACGACTACGACGACGACGACGACGAGGGCTACCTCACTGCCGTCTCCAGGGTAGGGAGCATCAGCACCTCCGCCTCCGCCTGGAAGGACGACCTCGAAGACGCCGACGTGGCTCCACCCAGCCCCAGCAGCAGCGGCTACGCCGCCGAGAGGGGCACCAGCCTCGCCTCCAGCGCCGCCGCCAACGACGATCCCCAACCCCAACCCGACGACGACGATTGGCCCCGCGACAAGAAGCATCTCCACGAGGACGATACTTCTGCTTCATGGCGCAAACGGAAAAAGCACTTCTTCATCTTGAGCAATTCTGGCAAGCCAATTTATTCTAGGTATGGAGATGAGCATAAGCTTGCTGGGTTTTCCGCCACGTTGCAAGCAATCATTTCTTTCGTTGAGAACAGTGGTGACCATATCAAATTTGTAAGGGCTGCCAAACATCAGATAGTTTTCCTTGTCAAGGGTCCAATATACTTAGTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATGTATGGTCAGATGCTGCTGATTTTGACCAAGTCTGTCAACAGATGCTTTGAGAAGAACCCTAAATTTGATATGGCACCATTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACATGCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAATCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTTGCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTCCTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCTGATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAGTTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAAAGCATTTACCTTGATCAATATGTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAGATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGTTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATACGGAGAAAGCACCCTTTCCTGGTGATATATTGTCTTGCAGTACCATCACTGTTGGGGAGATATGAGGGATTAGGTTTGTATAACATTTTCACTAAAGTCA-TGATTTTATTTGCTACCCAGGGTATTTCATGTCAATTTTAATTGGTTCCTGTTTGTTGTCAATGCCATTTCGTTTCTTTCACTCTATGTATGTTCTTCGTGTAATCTAATCCGTTAGTACCTTTTAGAGTTAGTAATTTCCATCGGGATCCATACT] [+] EMBL AK067175 [GGAGCGAGCGTGCAAGGAAGAAGAAGAAGAGGCATCGGCATCGCGTCGGGAAGGCCCCCCATGGATATGGATCCTCCCACCAATAACCCTAGCCCCCCTGGTCCCCCCGACTCCCCGCCGCCGGAGAAGGGGCTCGCCTCCCTCTCCCTCCGCACCTCTCACCTCCCTCCCGACTTCGAGATCCACGACGACTACGACGACGACGACGACGAGGGCTACCTCACTGCCGTCTCCAGGGTAGGGAGCATCAGCACCTCCGCCTCCGCCTGGAAGGACGACCTCGAAGACGCCGACGTGGCTCCACCCAGCCCCAGCAGCAGCGGCTACGCCGCCGAGAGGGGCACCAGCCTCGCCTCCAGCGCCGCCGCCAACGACGATCCCCAACCCCAACCCGACGACGACGATTGGCCCCGCGACAAGAAGCATCTCCACGAGGACGATACTTCTGCTTCATGGCGCAAACGGAAAAAGCACTTCTTCATCTTGAGCAATTCTGGCAAGCCAATTTATTCTAGGTATGGAGATGAGCATAAGCTTGCTGGGTTTTCCGCCACGTTGCAAGCAATCATTTCTTTCGTTGAGAACAGTGGTGACCATATCAAATTTGTAAGGGCTGCCAAACATCAGATAGTTTTCCTTGTCAAGGGTCCAATATACTTAGTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATGTATGGTCAGATGCTGCTGATTTTGACCAAGTCTGTCAACAGATGCTTTGAGAAGAACCCTAAATTTGATATGGCACCATTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACATGCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAATCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTTGCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTCCTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCTGATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAGTTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAAAGCATTTACCTTGATCAATATGTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAGATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGTTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATACGGAGAAAGCACCCTTTCCTGGTGATATATTGTCTTGCAGTACCATCACTGTTGGGGAGATATGAGGGATTAGGTTTGTATAACATTTTCACTAAAGTCA TGATTTTATTTGCTACCCAGGGTATTTCATGTCAATTTTAATTGGTTCCTGTTTGTTGTCAATGCCATTTCGTTTCTTTCACTCTATGTATGTTCTTCGTGTAATCTAATCCGTTAGTACCTTTTAGAGTTAGTAATTTCCATCGGGATCCATACT] [-] EMBL CB662123 [ CCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTCCTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCTGATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAGTTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAAAGCATTTACCTTGATCAATATGTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAGATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGTTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATACGGAGAAAGCACCCTTTCCTGGTGATATATTGTCTTGCAGTACCATCACTGTTGGGGAGATATGAGGGATTAGGTTTGTATAACATTTTCACTAAAGTCAGTGATTTTATTTGCTACCCAG ] consensusID : consensus_5958#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence [ATTGTCAAGGGTCCAATATACTTAGTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATGTATGGTCAGATGCTGCTGATTTTGACCATTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACATGCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAATCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTTGCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTCCTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCTGATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAGTTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAAAGCATTTACCTTGATCAATATGTATCATCTGAGATCCC] [+] EMBL CB662122 [ATTGTCAAGGGTCCAATATACTTAGTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATGTATGGTCAGATGCTGCTGATTTTGACCATTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACATGCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAATCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTTGCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTCCTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCTGATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAGTTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAAAGCATTTACCTTGATCAATATGTATCATCTGAGATCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5958#0 GGAGCGAGCGTGCAAGGAAGAAGAAGAAGAGGCATCGGCATCGCGTCGGGAAGGCCCCCC 60 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 ATGGATATGGATCCTCCCACCAATAACCCTAGCCCCCCTGGTCCCCCCGACTCCCCGCCG 120 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 CCGGAGAAGGGGCTCGCCTCCCTCTCCCTCCGCACCTCTCACCTCCCTCCCGACTTCGAG 180 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 ATCCACGACGACTACGACGACGACGACGACGAGGGCTACCTCACTGCCGTCTCCAGGGTA 240 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 GGGAGCATCAGCACCTCCGCCTCCGCCTGGAAGGACGACCTCGAAGACGCCGACGTGGCT 300 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 CCACCCAGCCCCAGCAGCAGCGGCTACGCCGCCGAGAGGGGCACCAGCCTCGCCTCCAGC 360 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 GCCGCCGCCAACGACGATCCCCAACCCCAACCCGACGACGACGATTGGCCCCGCGACAAG 420 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 AAGCATCTCCACGAGGACGATACTTCTGCTTCATGGCGCAAACGGAAAAAGCACTTCTTC 480 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 ATCTTGAGCAATTCTGGCAAGCCAATTTATTCTAGGTATGGAGATGAGCATAAGCTTGCT 540 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 GGGTTTTCCGCCACGTTGCAAGCAATCATTTCTTTCGTTGAGAACAGTGGTGACCATATC 600 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 AAATTTGTAAGGGCTGCCAAACATCAGATAGTTTTCCTTGTCAAGGGTCCAATATACTTA 660 consensus_5958#1 ------------------------------------ATTGTCAAGGGTCCAATATACTTA 24 *********************** consensus_5958#0 GTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATG 720 consensus_5958#1 GTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATG 84 ************************************************************ consensus_5958#0 TATGGTCAGATGCTGCTGATTTTGACCAAGTCTGTCAACAGATGCTTTGAGAAGAACCCT 780 consensus_5958#1 TATGGTCAGATGCTGCTGATTTTGACCA-------------------------------- 112 **************************** consensus_5958#0 AAATTTGATATGGCACCATTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACAT 840 consensus_5958#1 ------------------TTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACAT 154 ****************************************** consensus_5958#0 GCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAA 900 consensus_5958#1 GCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAA 214 ************************************************************ consensus_5958#0 TCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTT 960 consensus_5958#1 TCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTT 274 ************************************************************ consensus_5958#0 GCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTG 1020 consensus_5958#1 GCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTG 334 ************************************************************ consensus_5958#0 CATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACT 1080 consensus_5958#1 CATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACT 394 ************************************************************ consensus_5958#0 TCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCT 1140 consensus_5958#1 TCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCT 454 ************************************************************ consensus_5958#0 TATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCC 1200 consensus_5958#1 TATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCC 514 ************************************************************ consensus_5958#0 TTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTC 1260 consensus_5958#1 TTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTC 574 ************************************************************ consensus_5958#0 CTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCT 1320 consensus_5958#1 CTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCT 634 ************************************************************ consensus_5958#0 GATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAG 1380 consensus_5958#1 GATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAG 694 ************************************************************ consensus_5958#0 TTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAA 1440 consensus_5958#1 TTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAA 754 ************************************************************ consensus_5958#0 AGCATTTACCTTGATCAATATGTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAG 1500 consensus_5958#1 AGCATTTACCTTGATCAATATGTATCATCTGAGATCCC---------------------- 792 ********************************* **** consensus_5958#0 CAACAGAAAAGATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCA 1560 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 ACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGTTCTGTTCTGCTGGATA 1620 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 ACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGAGTCAAGCAATC 1680 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 AAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATAC 1740 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 GGAGAAAGCACCCTTTCCTGGTGATATATTGTCTTGCAGTACCATCACTGTTGGGGAGAT 1800 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 ATGAGGGATTAGGTTTGTATAACATTTTCACTAAAGTCATGATTTTATTTGCTACCCAGG 1860 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 GTATTTCATGTCAATTTTAATTGGTTCCTGTTTGTTGTCAATGCCATTTCGTTTCTTTCA 1920 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 CTCTATGTATGTTCTTCGTGTAATCTAATCCGTTAGTACCTTTTAGAGTTAGTAATTTCC 1980 consensus_5958#1 ------------------------------------------------------------ consensus_5958#0 ATCGGGATCCATACT 1995 consensus_5958#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||