These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5968#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence [ATAACCTAGGAGTTAATCACCTAGTAATGGTTAAGCAAAATATATGTGTGAGGTAGTTAAAATGCACTCTAGCTATGAATAAACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAATCATAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACTAGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACTAAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGTTCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTATAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTGTTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGAATCACCTTACAACAGCATTTCACAATAGTACCTATGTAAATCCTACACTATACCGACGAAACTTCTAAAATTCATAACTCTCAAATGAAATGAGATAAAATAGAAATTCTTTCACATAAATTCATATTAGACTAGTACCTATACACTGTGCAC] [+] EMBL CF304268 [ATAACCTAGGAGTTAATCACCTAGTAATGGTTAAGCAAAATATATGTGTGAGGTAGTTAAAATGCACTCTAGCTATGAATAAACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAATCATAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACTAGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACTAAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGTTCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTATAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTGTTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGAATCACCTTACAACAGCATTTCACAATAGTACCTATGTAAATCCTACACTATACCGACGAAACTTCTAAAATTCATAACTCTCAAATGAAATGAGATAAAATAGAAATTCTTTCACATAAATTCATATTAGACTAGTACCTATACACTGTGCAC] [+] EMBL CF304978 [ATAACCTAGGAGTTAATCACCTAGTAATGGTTAAGCAAAATATATGTGTGAGGTAGTTAAAATGCACTCTAGCTATGAATAAACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAAACATAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACTAGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACTAAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGTTCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTATAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTGTTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGA ] consensusID : consensus_5968#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [CGAGGCTTAAATTGTAACACATTTGTACTAAAATTCATACTTTACTTTAAATGAAGTGAACCAAATATCTATATAACCAGGAAACAGTGGGCTTCAACATATTAAAATAAAATATGGAACCTTCTGTACAAGTTATAGCTCTAAACTTTAAATTTATAGGATAGGTGCTAATGACATAGTATCGATTGAGCAATATGTATATATATAAATGTATATAAAAATACACTCTAGCTATAATGAAACCCAAATAAAACTTGTTACACCAGTGAATGCATAGTTCCATCCCCATCCACCAAAACTTAAGGCACTTAGCTCATATAATAATTTCTAGGTTGATATAATAAATTGCTAGCATGGACTAAAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCCTATGAACTAAGGTTAGATTAGTTAACTAAAATACTGATTTTATAC] [+] EMBL CF305872 [CGAGGCTTAAATTGTAACACATTTGTACTAAAATTCATACTTTACTTTAAATGAAGTGAACCAAATATCTATATAACCAGGAAACAGTGGGCTTCAACATATTAAAATAAAATATGGAACCTTCTGTACAAGTTATAGCTCTAAACTTTAAATTTATAGGATAGGTGCTAATGACATAGTATCGATTGAGCAATATGTATATATATAAATGTATATAAAAATACACTCTAGCTATAATGAAACCCAAATAAAACTTGTTACACCAGTGAATGCATAGTTCCATCCCCATCCACCAAAACTTAAGGCACTTAGCTCATATAATAATTTCTAGGTTGATATAATAAATTGCTAGCATGGACTAAAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCCTATGAACTAAGGTTAGATTAGTTAACTAAAATACTGATTTTATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5968#0 ------------------------------------------------------------ consensus_5968#1 CGAGGCTTAAATTGTAACACATTTGTACTAAAATTCATACTTTACTTTAAATGAAGTGAA 60 consensus_5968#0 ------------------------------------------------------------ consensus_5968#1 CCAAATATCTATATAACCAGGAAACAGTGGGCTTCAACATATTAAAATAAAATATGGAAC 120 consensus_5968#0 -----------------------------------ATAACCTAGGAGTTAATCACCTAGT 25 consensus_5968#1 CTTCTGTACAAGTTATAGCTCTAAACTTTAAATTTATAGGATAGGTGCTAATGACATAGT 180 *** **** * **** ** **** consensus_5968#0 AATGGTTAAGCAAAATATATGTGTG---AGGTA-GTTAAAATGCACTCTAGCTATGAATA 81 consensus_5968#1 ATCGATTGAGCAATATGTATATATATAAATGTATATAAAAATACACTCTAGCTATAATGA 240 * * ** ***** ** *** * * * *** * ***** ************ * * consensus_5968#0 AACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAATCA 141 consensus_5968#1 AACCCAAATAAAACTTGTTACACCAGTGAATGCATAGTTCCATCCCCATCCACCAAAACT 300 **** * ************* ***** ** ************************* * consensus_5968#0 TAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACT 201 consensus_5968#1 TAAGGCACTTAGCTCATATAATAATTTCTAGGTTGATATAATAAATTGCTAGCATGGACT 360 *************************** *************************** **** consensus_5968#0 AGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACT 261 consensus_5968#1 AAAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCCTATGAACT 420 * ************************************************* ******** consensus_5968#0 AAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGT 321 consensus_5968#1 AAGGTTAGATTAGTTAACTAAAATACTGATTTTATAC----------------------- 457 ******* ******************* ********* consensus_5968#0 TCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTA 381 consensus_5968#1 ------------------------------------------------------------ consensus_5968#0 TAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTG 441 consensus_5968#1 ------------------------------------------------------------ consensus_5968#0 TTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGAATCACCTT 501 consensus_5968#1 ------------------------------------------------------------ consensus_5968#0 ACAACAGCATTTCACAATAGTACCTATGTAAATCCTACACTATACCGACGAAACTTCTAA 561 consensus_5968#1 ------------------------------------------------------------ consensus_5968#0 AATTCATAACTCTCAAATGAAATGAGATAAAATAGAAATTCTTTCACATAAATTCATATT 621 consensus_5968#1 ------------------------------------------------------------ consensus_5968#0 AGACTAGTACCTATACACTGTGCAC 646 consensus_5968#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||