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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5968 cluster # 5968       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5968#0 length = 646 sequences # 2  
consensus_5968#1 length = 457 sequences # 1  

consensusID : consensus_5968#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 646
fasta sequence
                              [ATAACCTAGGAGTTAATCACCTAGTAATGGTTAAGCAAAATATATGTGTGAGGTAGTTAAAATGCACTCTAGCTATGAATAAACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAATCATAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACTAGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACTAAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGTTCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTATAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTGTTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGAATCACCTTACAACAGCATTTCACAATAGTACCTATGTAAATCCTACACTATACCGACGAAACTTCTAAAATTCATAACTCTCAAATGAAATGAGATAAAATAGAAATTCTTTCACATAAATTCATATTAGACTAGTACCTATACACTGTGCAC]

[+] EMBL CF304268             [ATAACCTAGGAGTTAATCACCTAGTAATGGTTAAGCAAAATATATGTGTGAGGTAGTTAAAATGCACTCTAGCTATGAATAAACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAATCATAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACTAGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACTAAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGTTCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTATAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTGTTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGAATCACCTTACAACAGCATTTCACAATAGTACCTATGTAAATCCTACACTATACCGACGAAACTTCTAAAATTCATAACTCTCAAATGAAATGAGATAAAATAGAAATTCTTTCACATAAATTCATATTAGACTAGTACCTATACACTGTGCAC]
[+] EMBL CF304978             [ATAACCTAGGAGTTAATCACCTAGTAATGGTTAAGCAAAATATATGTGTGAGGTAGTTAAAATGCACTCTAGCTATGAATAAACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAAACATAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACTAGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACTAAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGTTCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTATAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTGTTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGA                                                                                                                                                         ]


>consensus_5968#0 ATAACCTAGGAGTTAATCACCTAGTAATGGTTAAGCAAAATATATGTGTGAGGTAGTTAA AATGCACTCTAGCTATGAATAAACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTT CCATCCCCATCCACCAAATCATAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATAT AATAAATTGCTAGCATAGACTAGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATA AAGACCATAAGCTTATGAACTAAGGTTAAATTAGTTAACTAAAATACTCATTTTATACAT CACTAGCTATATGAGGCAAGTTCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACA CTATACACCTATAACACGTTATAACTTGTAAAATATATAAAGAATTCATATTAACTCCAA AAAATTGTCAAACCAAATGTGTTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCAT AAACTTGATAAGAATCACCTTACAACAGCATTTCACAATAGTACCTATGTAAATCCTACA CTATACCGACGAAACTTCTAAAATTCATAACTCTCAAATGAAATGAGATAAAATAGAAAT TCTTTCACATAAATTCATATTAGACTAGTACCTATACACTGTGCAC



consensusID : consensus_5968#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence
                              [CGAGGCTTAAATTGTAACACATTTGTACTAAAATTCATACTTTACTTTAAATGAAGTGAACCAAATATCTATATAACCAGGAAACAGTGGGCTTCAACATATTAAAATAAAATATGGAACCTTCTGTACAAGTTATAGCTCTAAACTTTAAATTTATAGGATAGGTGCTAATGACATAGTATCGATTGAGCAATATGTATATATATAAATGTATATAAAAATACACTCTAGCTATAATGAAACCCAAATAAAACTTGTTACACCAGTGAATGCATAGTTCCATCCCCATCCACCAAAACTTAAGGCACTTAGCTCATATAATAATTTCTAGGTTGATATAATAAATTGCTAGCATGGACTAAAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCCTATGAACTAAGGTTAGATTAGTTAACTAAAATACTGATTTTATAC]

[+] EMBL CF305872             [CGAGGCTTAAATTGTAACACATTTGTACTAAAATTCATACTTTACTTTAAATGAAGTGAACCAAATATCTATATAACCAGGAAACAGTGGGCTTCAACATATTAAAATAAAATATGGAACCTTCTGTACAAGTTATAGCTCTAAACTTTAAATTTATAGGATAGGTGCTAATGACATAGTATCGATTGAGCAATATGTATATATATAAATGTATATAAAAATACACTCTAGCTATAATGAAACCCAAATAAAACTTGTTACACCAGTGAATGCATAGTTCCATCCCCATCCACCAAAACTTAAGGCACTTAGCTCATATAATAATTTCTAGGTTGATATAATAAATTGCTAGCATGGACTAAAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCCTATGAACTAAGGTTAGATTAGTTAACTAAAATACTGATTTTATAC]


>consensus_5968#1 CGAGGCTTAAATTGTAACACATTTGTACTAAAATTCATACTTTACTTTAAATGAAGTGAA CCAAATATCTATATAACCAGGAAACAGTGGGCTTCAACATATTAAAATAAAATATGGAAC CTTCTGTACAAGTTATAGCTCTAAACTTTAAATTTATAGGATAGGTGCTAATGACATAGT ATCGATTGAGCAATATGTATATATATAAATGTATATAAAAATACACTCTAGCTATAATGA AACCCAAATAAAACTTGTTACACCAGTGAATGCATAGTTCCATCCCCATCCACCAAAACT TAAGGCACTTAGCTCATATAATAATTTCTAGGTTGATATAATAAATTGCTAGCATGGACT AAAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCCTATGAACT AAGGTTAGATTAGTTAACTAAAATACTGATTTTATAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5968#0      ------------------------------------------------------------
consensus_5968#1      CGAGGCTTAAATTGTAACACATTTGTACTAAAATTCATACTTTACTTTAAATGAAGTGAA 60
                                                                                  

consensus_5968#0      ------------------------------------------------------------
consensus_5968#1      CCAAATATCTATATAACCAGGAAACAGTGGGCTTCAACATATTAAAATAAAATATGGAAC 120
                                                                                  

consensus_5968#0      -----------------------------------ATAACCTAGGAGTTAATCACCTAGT 25
consensus_5968#1      CTTCTGTACAAGTTATAGCTCTAAACTTTAAATTTATAGGATAGGTGCTAATGACATAGT 180
                                                         ***   **** * **** ** ****

consensus_5968#0      AATGGTTAAGCAAAATATATGTGTG---AGGTA-GTTAAAATGCACTCTAGCTATGAATA 81
consensus_5968#1      ATCGATTGAGCAATATGTATATATATAAATGTATATAAAAATACACTCTAGCTATAATGA 240
                      *  * ** ***** ** *** * *    * ***  * ***** ************ *  *

consensus_5968#0      AACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAATCA 141
consensus_5968#1      AACCCAAATAAAACTTGTTACACCAGTGAATGCATAGTTCCATCCCCATCCACCAAAACT 300
                      **** * ************* ***** **   ************************* * 

consensus_5968#0      TAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACT 201
consensus_5968#1      TAAGGCACTTAGCTCATATAATAATTTCTAGGTTGATATAATAAATTGCTAGCATGGACT 360
                      *************************** *************************** ****

consensus_5968#0      AGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACT 261
consensus_5968#1      AAAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCCTATGAACT 420
                      * ************************************************* ********

consensus_5968#0      AAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGT 321
consensus_5968#1      AAGGTTAGATTAGTTAACTAAAATACTGATTTTATAC----------------------- 457
                      ******* ******************* *********                       

consensus_5968#0      TCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTA 381
consensus_5968#1      ------------------------------------------------------------
                                                                                  

consensus_5968#0      TAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTG 441
consensus_5968#1      ------------------------------------------------------------
                                                                                  

consensus_5968#0      TTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGAATCACCTT 501
consensus_5968#1      ------------------------------------------------------------
                                                                                  

consensus_5968#0      ACAACAGCATTTCACAATAGTACCTATGTAAATCCTACACTATACCGACGAAACTTCTAA 561
consensus_5968#1      ------------------------------------------------------------
                                                                                  

consensus_5968#0      AATTCATAACTCTCAAATGAAATGAGATAAAATAGAAATTCTTTCACATAAATTCATATT 621
consensus_5968#1      ------------------------------------------------------------
                                                                                  

consensus_5968#0      AGACTAGTACCTATACACTGTGCAC 646
consensus_5968#1      -------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)