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Oryza sativa
cluster # 5972 cluster # 5972       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5972#0 length = 673 sequences # 1  
consensus_5972#1 length = 503 sequences # 2  

consensusID : consensus_5972#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence
                              [GAGCGGCCGCTCCAACATCAGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTCACAGAAGATCAGGGTCGGCCAGCGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCCTTGCGCATCCCANGTTTCAGAACCCGTCGACTCGC]

[+] EMBL BI305893             [GAGCGGCCGCTCCAACATCAGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTCACAGAAGATCAGGGTCGGCCAGCGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCCTTGCGCATCCCANGTTTCAGAACCCGTCGACTCGC]


>consensus_5972#0 GAGCGGCCGCTCCAACATCAGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGA TTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCT GCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGT AACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGG AGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGT TTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATA GAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATG GTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCG CTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCT TTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTCACAGAAGATCAGGGTCGGCCAG CGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCCTTGCGCATCCCANGTTTCAGAA CCCGTCGACTCGC



consensusID : consensus_5972#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 503
fasta sequence
                              [CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGCGTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTGAACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTCACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCNACCTATTTAAAGTT]

[-] EMBL BE230638             [CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGCGTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTGAACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTCACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCNACCTATTTAAAGTT]
[-] EMBL BE230008             [                                                                                                                TCGGCGTGAACGCGCCGGGCACCGCGAACAGCACCGCCTTCNTG CCGCCGTCAGCTCCGCCACCGTCACCGTCTTCAGCTCCCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGTT]


>consensus_5972#1 CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGC GTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTG AACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTC ACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCC ATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTT CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGG TTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGC TTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCG CGCCGTCCNACCTATTTAAAGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5972#0      ------------------------------------------------------------
consensus_5972#1      CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGC 60
                                                                                  

consensus_5972#0      ------------------------------------------------------------
consensus_5972#1      GTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTG 120
                                                                                  

consensus_5972#0      ------------------------------------------------------------
consensus_5972#1      AACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTC 180
                                                                                  

consensus_5972#0      ---------------------GAGCGGCCGCTCCAACATCA-GTCGCGCGCTTCAGCGCC 38
consensus_5972#1      ACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCC 240
                                           *   ** **    *  *    ******************

consensus_5972#0      ATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTT 98
consensus_5972#1      ATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTT 300
                      ************************************************************

consensus_5972#0      CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGG 158
consensus_5972#1      CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGG 360
                      ************************************************************

consensus_5972#0      TTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGC 218
consensus_5972#1      TTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGC 420
                      ************************************************************

consensus_5972#0      TTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCG 278
consensus_5972#1      TTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCG 480
                      ************************************************************

consensus_5972#0      CGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTC 338
consensus_5972#1      CGCCGTCCNACCTATTTAAAGTT------------------------------------- 503
                      ******** **************                                     

consensus_5972#0      TAATCATTGGCTTTACCCGATAGAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTC 398
consensus_5972#1      ------------------------------------------------------------
                                                                                  

consensus_5972#0      GGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACG 458
consensus_5972#1      ------------------------------------------------------------
                                                                                  

consensus_5972#0      AACGATTTGCACGTCAGTATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCC 518
consensus_5972#1      ------------------------------------------------------------
                                                                                  

consensus_5972#0      GCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTC 578
consensus_5972#1      ------------------------------------------------------------
                                                                                  

consensus_5972#0      ACAGAAGATCAGGGTCGGCCAGCGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCC 638
consensus_5972#1      ------------------------------------------------------------
                                                                                  

consensus_5972#0      TTGCGCATCCCANGTTTCAGAACCCGTCGACTCGC 673
consensus_5972#1      -----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)