These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [GAGCGGCCGCTCCAACATCAGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTCACAGAAGATCAGGGTCGGCCAGCGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCCTTGCGCATCCCANGTTTCAGAACCCGTCGACTCGC] [+] EMBL BI305893 [GAGCGGCCGCTCCAACATCAGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTCACAGAAGATCAGGGTCGGCCAGCGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCCTTGCGCATCCCANGTTTCAGAACCCGTCGACTCGC] consensusID : consensus_5972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 503 fasta sequence [CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGCGTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTGAACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTCACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCNACCTATTTAAAGTT] [-] EMBL BE230638 [CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGCGTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTGAACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTCACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCNACCTATTTAAAGTT] [-] EMBL BE230008 [ TCGGCGTGAACGCGCCGGGCACCGCGAACAGCACCGCCTTCNTG CCGCCGTCAGCTCCGCCACCGTCACCGTCTTCAGCTCCCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5972#0 ------------------------------------------------------------ consensus_5972#1 CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGC 60 consensus_5972#0 ------------------------------------------------------------ consensus_5972#1 GTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTG 120 consensus_5972#0 ------------------------------------------------------------ consensus_5972#1 AACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTC 180 consensus_5972#0 ---------------------GAGCGGCCGCTCCAACATCA-GTCGCGCGCTTCAGCGCC 38 consensus_5972#1 ACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCC 240 * ** ** * * ****************** consensus_5972#0 ATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTT 98 consensus_5972#1 ATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTT 300 ************************************************************ consensus_5972#0 CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGG 158 consensus_5972#1 CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGG 360 ************************************************************ consensus_5972#0 TTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGC 218 consensus_5972#1 TTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGC 420 ************************************************************ consensus_5972#0 TTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCG 278 consensus_5972#1 TTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCG 480 ************************************************************ consensus_5972#0 CGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTC 338 consensus_5972#1 CGCCGTCCNACCTATTTAAAGTT------------------------------------- 503 ******** ************** consensus_5972#0 TAATCATTGGCTTTACCCGATAGAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTC 398 consensus_5972#1 ------------------------------------------------------------ consensus_5972#0 GGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACG 458 consensus_5972#1 ------------------------------------------------------------ consensus_5972#0 AACGATTTGCACGTCAGTATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCC 518 consensus_5972#1 ------------------------------------------------------------ consensus_5972#0 GCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTC 578 consensus_5972#1 ------------------------------------------------------------ consensus_5972#0 ACAGAAGATCAGGGTCGGCCAGCGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCC 638 consensus_5972#1 ------------------------------------------------------------ consensus_5972#0 TTGCGCATCCCANGTTTCAGAACCCGTCGACTCGC 673 consensus_5972#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||