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Oryza sativa
cluster # 5974 cluster # 5974       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5974#0 length = 2418 sequences # 3  

consensusID : consensus_5974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2418
fasta sequence
                              [ACATGATAATGTGGAAAGCAGTGAAGCGCCAAGCGAGGATACAAGCAGTGAAAGCAATTCAGACAGCAGCTCAGGTGATGAGTCGGATAAGGAGCTTGGGAAGTACTTCTATCCTAGTTTCGACGAACTGAAGAATTCAAGACCACCAGAACCCGGAATGAAATTTCCATCCCTTCAAGCCGCACAAAGATTCTATTACGCACATGCTCTCCTTACTGGTTTTGTAGGAAAGAGGGGAACCAACTACAAGAGAAAGAAGTTTCACTTAGAATGCAACAAGAGTGGCAAAATGAAGTTAACGAAGTCATCTGAAAACCCAATGAAGAAGAGGAGAAGCAATCTTGTAGAGAAGACACAATGCAAGGCAAGGGTGATAGTGAAACTCGATAAGGGAGAATGGGAGTTCACAGCAGTTCGCCATGAGCACAATCATCCGTTATGCCCAAGCCCTTTGCTTGCAAGATTCATAGTAGACCACAAACAAATGTCAACTGGAGAGAAGTCATTTTTAAGAGTTCTGCAACAAAATAGGGTACCTCCTAAGAAAATTATGAAGATTTTCAGGAAACTAAGAGTTTGTTTCGGAGACATACCATTTGAAAATAAAGATGAGCACAACATAGCACAGACAGAACATAGAAAAGCAAACTCAGATGTTGAAAGCGCATTGAAGCACTTCACAGAATTGCAGATTCAAAACCCAGAATTTCTGTACGTAATGCAAAAAGATGAGGACAACACAGTTACAAGCATCTTCTGGACTGATGCAAGATTGAGGATCGAGTATGATATTTTCGGAGATCTCATTATGTTTGATGCTGCCTATAGCACTGATATGTATAACATGCCTTTTGTGCCTATTATTGGAATAAATAGCCACGCGACACCCTTCCTGTTAGGATGTGCTTTGTTAAAAGATGAGAAAGTAGAAACCTTCGAATGGATGTTGCGTACATTTTTGCAAGTGATGGGAGGAAAAATGCCAAGAGCGGTCATAACAAACCAGGACACATCAATGGAGAAGGCATTTGCAGAACTCATGCCGCATGTAAGGCTTAGGTTTTGCAAGCGGCATGTTATGAGCAAAGCTCAGGAAAAGCTTGGAGACTTCATGACAGCAAGAGGTAACATAAATACAGATCTACATAACTTAGTAGGCAACTCGCTGGTAGAAACAGAATTTGAAGAAGGATGGGTTGAGCTTATTGAGAGATACAATGCAAGTGAAAACCAACACCTGCAACTCATGTGGCAAACAAGAAAAAGTTGGGCACCTGTCTATTTTAGAGAAGATCTCTACCCATTTATTGACTCAGTTGGTTCCAACGAGGGAATGAACTCATTATTTAAAGGTAATATGCTTCCAAAGGACACAATAGATAAGTTCATTGGGCAATTTAAGGAGATACAAGAGAATATAGCAAAAGTTCATGAAGAAGATAGATTTCAGTCAGGAGCTGACCTTAAATACATCTCAATGCAACCAATAGAACAACATGCAGCACATATTTACACAAGGGAAATATTTCTGAAAGTACAGGAAGAACTACTACATTCTACTGCATTCAACGTGCAGGAGATACAAATAGGGACAGTGTACAGACTTGAAAAGGTCTTCAACTATGAGAACCCAGAGTTTGATAGAAATTATTTTGAAGTGCTTGCTGAACCTGGCATCAATGCATTCAAGTGCCAATGTGCAAAATTTACAAGGGATGGAATACCTTGCTGCCACATATTCAGACTTTTCACTCAGTTTGGAATCAATGAAATACCAGAGCAGTACATAATGCCCAGATGGACTAAAAAATTCAGAGAGGAGCAGCTAAAACAGAACAAGGAAAAATTATTTGACAAGCATGGTATAAAGGATTCAGAAAATACATTGAGATATGCAATGCTAATGAGTAAAGCGGCTGAAATTTGCCCGAAAATTTGCCATGATGAAGCAAAATGCAGCATATTCATGCAGGAACTAGACAAGATTCAA-GAGAAGTTGATAACGGAGAGCAGAGAAAATGCACAGAATGATAACCCATGTCGTGAACAAGGGGCCTTGCAACAGGAGCATCGTGGGAGCAGTAGCAATACAGAGCAAGAGCAACAGCATACAGGTGGCTTGTAAGGCACAGTGATGCTTGGTCCAAAAT-GTGCAGT-GGGTCAGTAGAGCATTA-CGGGAGTGAG-CCAATTGATCTCTTTG-TGCGGGTTCTGGTCTTCTGGAGGAGACTATTTTGTCCAGGAAGTAGAAT-GGTTAGTATAGTTAGTTTAGCTGAAGTTAGTTGTGGTAAACTTGTCTGTTAGGAAAGTGTTGGTCGAGAGCAGGAAGACGTGTAAAGATGCATTGTATCTATTAGCTCTCCTGTCTAAACATGCATCTTGGTTCGCGGCAGTATGGGAAGCTGATAGTTAATTGACATC]

[+] EMBL AK064078             [ACATGATAATGTGGAAAGCAGTGAAGCGCCAAGCGAGGATACAAGCAGTGAAAGCAATTCAGACAGCAGCTCAGGTGATGAGTCGGATAAGGAGCTTGGGAAGTACTTCTATCCTAGTTTCGACGAACTGAAGAATTCAAGACCACCAGAACCCGGAATGAAATTTCCATCCCTTCAAGCCGCACAAAGATTCTATTACGCACATGCTCTCCTTACTGGTTTTGTAGGAAAGAGGGGAACCAACTACAAGAGAAAGAAGTTTCACTTAGAATGCAACAAGAGTGGCAAAATGAAGTTAACGAAGTCATCTGAAAACCCAATGAAGAAGAGGAGAAGCAATCTTGTAGAGAAGACACAATGCAAGGCAAGGGTGATAGTGAAACTCGATAAGGGAGAATGGGAGTTCACAGCAGTTCGCCATGAGCACAATCATCCGTTATGCCCAAGCCCTTTGCTTGCAAGATTCATAGTAGACCACAAACAAATGTCAACTGGAGAGAAGTCATTTTTAAGAGTTCTGCAACAAAATAGGGTACCTCCTAAGAAAATTATGAAGATTTTCAGGAAACTAAGAGTTTGTTTCGGAGACATACCATTTGAAAATAAAGATGAGCACAACATAGCACAGACAGAACATAGAAAAGCAAACTCAGATGTTGAAAGCGCATTGAAGCACTTCACAGAATTGCAGATTCAAAACCCAGAATTTCTGTACGTAATGCAAAAAGATGAGGACAACACAGTTACAAGCATCTTCTGGACTGATGCAAGATTGAGGATCGAGTATGATATTTTCGGAGATCTCATTATGTTTGATGCTGCCTATAGCACTGATATGTATAACATGCCTTTTGTGCCTATTATTGGAATAAATAGCCACGCGACACCCTTCCTGTTAGGATGTGCTTTGTTAAAAGATGAGAAAGTAGAAACCTTCGAATGGATGTTGCGTACATTTTTGCAAGTGATGGGAGGAAAAATGCCAAGAGCGGTCATAACAAACCAGGACACATCAATGGAGAAGGCATTTGCAGAACTCATGCCGCATGTAAGGCTTAGGTTTTGCAAGCGGCATGTTATGAGCAAAGCTCAGGAAAAGCTTGGAGACTTCATGACAGCAAGAGGTAACATAAATACAGATCTACATAACTTAGTAGGCAACTCGCTGGTAGAAACAGAATTTGAAGAAGGATGGGTTGAGCTTATTGAGAGATACAATGCAAGTGAAAACCAACACCTGCAACTCATGTGGCAAACAAGAAAAAGTTGGGCACCTGTCTATTTTAGAGAAGATCTCTACCCATTTATTGACTCAGTTGGTTCCAACGAGGGAATGAACTCATTATTTAAAGGTAATATGCTTCCAAAGGACACAATAGATAAGTTCATTGGGCAATTTAAGGAGATACAAGAGAATATAGCAAAAGTTCATGAAGAAGATAGATTTCAGTCAGGAGCTGACCTTAAATACATCTCAATGCAACCAATAGAACAACATGCAGCACATATTTACACAAGGGAAATATTTCTGAAAGTACAGGAAGAACTACTACATTCTACTGCATTCAACGTGCAGGAGATACAAATAGGGACAGTGTACAGACTTGAAAAGGTCTTCAACTATGAGAACCCAGAGTTTGATAGAAATTATTTTGAAGTGCTTGCTGAACCTGGCATCAATGCATTCAAGTGCCAATGTGCAAAATTTACAAGGGATGGAATACCTTGCTGCCACATATTCAGACTTTTCACTCAGTTTGGAATCAATGAAATACCAGAGCAGTACATAATGCCCAGATGGACTAAAAAATTCAGAGAGGAGCAGCTAAAACAGAACAAGGAAAAATTATTTGACAAGCATGGTATAAAGGATTCAGAAAATACATTGAGATATGCAATGCTAATGAGTAAAGCGGCTGAAATTTGCCCGAAAATTTGCCATGATGAAGCAAAATGCAGCATATTCATGCAGGAACTAGACAAGATTCAA GAGAAGTTGATAACGGAGAGCAGAGAAAATGCACAGAATGATAACCCATGTCGTGAACAAGGGGCCTTGCAACAGGAGCATCGTGGGAGCAGTAGCAATACAGAGCAAGAGCAACAGCATACAGGTGGCTTGTAAGGCACAGTGATGTTTGGTCCAAAAT GTGCAGT GGGTCAGTAGAGCATTA CGGGAGTGAG CCAATTGATCTCTTTG TGCGGGTTCTGGTCTTCTGGAGGAGACTATTTTGTCCAGGAAGTAGAAT GGTTAGTATAGTTAGTTTAGCTGAAGTTAGTTGTGGTAAACTTGTCTGTTAGGAAAGTGTTGGTCGAGAGCAGGAAGACGTGTAAAGATGCATTGTATCTATTAGCTCTCCTGTCTAAACATGCATCTTGGTTCGCGGCAGTATGGGAAGCTGATAGTTAATTGACATC]
[+] EMBL CB096786             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CAACCAATAGAACAACATGCAGCACATATTTACACAAGGGAAATATTTCTGAAAGTACAGGAAGAACTACTACATTCTACTGCATTCAACGTGCAGGAGATACAAATAGGGACAGTGTACAGACTTGAAAAGGTCTTCAACTATGAGAACCCAGAGTTTGATAGAAATTATTTTGAAGTGCTTGCTGAACCTGGCATCAATGCATTCAAGTGCCAATGTGCAAAATTTACAAGGGATGGAATACCTTGCTGCCACATATTCAGACTTTTCACTCAGTTTGGAATCAATGAAATACCAGAGCAGCACATAATGCCCAGATGGACTAAAAAATTCAGAGAGGAGCAGCTAAAACAGAACAAGGAAAAATTATTTGACAAGCATGGTATAAAGGATTCAGAAAATACATTGAGATATGCAATGCTAATGAGTAAAGCGGCTGAAATTTGCCCGAAAATTTGCCATGATGAAGCAAAATGCAGCATATTCATGCAGGAACTAGACAAGATTCAAGGAGAAGTTGATAACGGAGAGCAGAGAAAATGCACAGAATGATAACCCATGTCGTGAACAAGGGGCCTTGCAACAGGAGCATCGTGGGAGCAGTAGCAATACAGAGCAAGAGCAACAGCATACAGGTGGCTTGTAAGGCACAGTGATGCTTGGTCCAAAATGGTGCAGTGGGGTCAGTAGAGCATTACCGGGAGTGAGCCCAATTGATCTCTTTGNGGCGGGTTCTGGTCTTCTGGANGAGACTATTTTGTCCAGGAAGTAGAATGGGTTAGTAT                                                                                                                                                                ]
[-] EMBL AU225645             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tTTGATAACGGAGAGCAGAGAAAATGCACAGAATGATGACCCATGTCGTGAACAAGGGGCCTTGCTACAGGAGCATCGTGGGAGCAGTAGCAATACAGAGCAAGAGCAACAGCATACAGGTGGCTTGTAAGGCACAGTGATGCTTGGTCCAAAAT GTGCAGT GGGTCAGTAGAGCATTA CGGGAGTGAG CCAATTGATCTCTTTG TGCGGGTTCTGGTCTTCTGGAGGAGACTATTTTGTCCAGGAAGTAGAAT GGTTAGTATAGTTAGTTTAGCTGAAGTTAGTTGTGGTAAACTTGTCTGTTAGGAAAGTGTTGGTCGAGAGCAGGAAGACGTGTAAAGATGCATTGTATCTATTAGCTCTCCTGTCTAAACATGCATCTTGGTTCGCGGCAGTATGGGAAGCTGATAGTTAAgcggc   ]


>consensus_5974#0 ACATGATAATGTGGAAAGCAGTGAAGCGCCAAGCGAGGATACAAGCAGTGAAAGCAATTC AGACAGCAGCTCAGGTGATGAGTCGGATAAGGAGCTTGGGAAGTACTTCTATCCTAGTTT CGACGAACTGAAGAATTCAAGACCACCAGAACCCGGAATGAAATTTCCATCCCTTCAAGC CGCACAAAGATTCTATTACGCACATGCTCTCCTTACTGGTTTTGTAGGAAAGAGGGGAAC CAACTACAAGAGAAAGAAGTTTCACTTAGAATGCAACAAGAGTGGCAAAATGAAGTTAAC GAAGTCATCTGAAAACCCAATGAAGAAGAGGAGAAGCAATCTTGTAGAGAAGACACAATG CAAGGCAAGGGTGATAGTGAAACTCGATAAGGGAGAATGGGAGTTCACAGCAGTTCGCCA TGAGCACAATCATCCGTTATGCCCAAGCCCTTTGCTTGCAAGATTCATAGTAGACCACAA ACAAATGTCAACTGGAGAGAAGTCATTTTTAAGAGTTCTGCAACAAAATAGGGTACCTCC TAAGAAAATTATGAAGATTTTCAGGAAACTAAGAGTTTGTTTCGGAGACATACCATTTGA AAATAAAGATGAGCACAACATAGCACAGACAGAACATAGAAAAGCAAACTCAGATGTTGA AAGCGCATTGAAGCACTTCACAGAATTGCAGATTCAAAACCCAGAATTTCTGTACGTAAT GCAAAAAGATGAGGACAACACAGTTACAAGCATCTTCTGGACTGATGCAAGATTGAGGAT CGAGTATGATATTTTCGGAGATCTCATTATGTTTGATGCTGCCTATAGCACTGATATGTA TAACATGCCTTTTGTGCCTATTATTGGAATAAATAGCCACGCGACACCCTTCCTGTTAGG ATGTGCTTTGTTAAAAGATGAGAAAGTAGAAACCTTCGAATGGATGTTGCGTACATTTTT GCAAGTGATGGGAGGAAAAATGCCAAGAGCGGTCATAACAAACCAGGACACATCAATGGA GAAGGCATTTGCAGAACTCATGCCGCATGTAAGGCTTAGGTTTTGCAAGCGGCATGTTAT GAGCAAAGCTCAGGAAAAGCTTGGAGACTTCATGACAGCAAGAGGTAACATAAATACAGA TCTACATAACTTAGTAGGCAACTCGCTGGTAGAAACAGAATTTGAAGAAGGATGGGTTGA GCTTATTGAGAGATACAATGCAAGTGAAAACCAACACCTGCAACTCATGTGGCAAACAAG AAAAAGTTGGGCACCTGTCTATTTTAGAGAAGATCTCTACCCATTTATTGACTCAGTTGG TTCCAACGAGGGAATGAACTCATTATTTAAAGGTAATATGCTTCCAAAGGACACAATAGA TAAGTTCATTGGGCAATTTAAGGAGATACAAGAGAATATAGCAAAAGTTCATGAAGAAGA TAGATTTCAGTCAGGAGCTGACCTTAAATACATCTCAATGCAACCAATAGAACAACATGC AGCACATATTTACACAAGGGAAATATTTCTGAAAGTACAGGAAGAACTACTACATTCTAC TGCATTCAACGTGCAGGAGATACAAATAGGGACAGTGTACAGACTTGAAAAGGTCTTCAA CTATGAGAACCCAGAGTTTGATAGAAATTATTTTGAAGTGCTTGCTGAACCTGGCATCAA TGCATTCAAGTGCCAATGTGCAAAATTTACAAGGGATGGAATACCTTGCTGCCACATATT CAGACTTTTCACTCAGTTTGGAATCAATGAAATACCAGAGCAGTACATAATGCCCAGATG GACTAAAAAATTCAGAGAGGAGCAGCTAAAACAGAACAAGGAAAAATTATTTGACAAGCA TGGTATAAAGGATTCAGAAAATACATTGAGATATGCAATGCTAATGAGTAAAGCGGCTGA AATTTGCCCGAAAATTTGCCATGATGAAGCAAAATGCAGCATATTCATGCAGGAACTAGA CAAGATTCAAGAGAAGTTGATAACGGAGAGCAGAGAAAATGCACAGAATGATAACCCATG TCGTGAACAAGGGGCCTTGCAACAGGAGCATCGTGGGAGCAGTAGCAATACAGAGCAAGA GCAACAGCATACAGGTGGCTTGTAAGGCACAGTGATGCTTGGTCCAAAATGTGCAGTGGG TCAGTAGAGCATTACGGGAGTGAGCCAATTGATCTCTTTGTGCGGGTTCTGGTCTTCTGG AGGAGACTATTTTGTCCAGGAAGTAGAATGGTTAGTATAGTTAGTTTAGCTGAAGTTAGT TGTGGTAAACTTGTCTGTTAGGAAAGTGTTGGTCGAGAGCAGGAAGACGTGTAAAGATGC ATTGTATCTATTAGCTCTCCTGTCTAAACATGCATCTTGGTTCGCGGCAGTATGGGAAGC TGATAGTTAATTGACATC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)