cluster # 5979

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Oryza sativa
cluster # 5979 cluster # 5979 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5979#0 length = 905 sequences # 2

consensus_5979#1 length = 607 sequences # 1

consensusID : consensus_5979#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 905
fasta sequence

                              [ACCTCACTCTCCCATCCCCCTTCTGTTCCACGACACGGCCTGCCCACACGGCACGGTAAGCCCAACCCAAGATGGAAGAACCCGCCGCCGCCGCCGCCTTTCCCGATCCGCCGGAGGACCCCTCCCCCTCCCCCTCCTCCGCGCCTTCTCCGGCCGCCGCGGCGCCTCCTCCGGGGCCGAGGGAGCTGGCGGCGGCGATGGAGGCGGTGGAGCGGGACGTCGCCGCCATCTCCGACAGCTACGCCTCCCTCTTCGCCTCCCTCCGCGTCGCCCTCGCCAACGTCACCTCGACGTCGGCGGAGAACATGGAGTGCCTGGGAGACGTCGTCGGCCGCCTCCAAGAATCCGCACTCGAAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGAGAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAGACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAGTAGCTAATGCAAGGAACATGTAATGACATTGTTTCAGCAATTATACATAATAACTCGCGCTCCAAGACAGCAAATGCTATAATCTGAAATGGCACACACCAGCAAAGGAGAAGATTTACCTTGTGTGGCAATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTTCTATATGTGTGCTTATGAGCTCCGTATTTGTATAGTGGGTTATTCAATTCAACCCATGGTGACATAATATCATTATCTGTAAATTGGCTATAAAGACTATCTTCATCACTTTGTTCTAACTCCATTCAAAAGAAAGCAATAAAGATCCTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK108064             [ACCTCACTCTCCCATCCCCCTTCTGTTCCACGACACGGCCTGCCCACACGGCACGGTAAGCCCAACCCAAGATGGAAGAACCCGCCGCCGCCGCCGCCTTTCCCGATCCGCCGGAGGACCCCTCCCCCTCCCCCTCCTCCGCGCCTTCTCCGGCCGCCGCGGCGCCTCCTCCGGGGCCGAGGGAGCTGGCGGCGGCGATGGAGGCGGTGGAGCGGGACGTCGCCGCCATCTCCGACAGCTACGCCTCCCTCTTCGCCTCCCTCCGCGTCGCCCTCGCCAACGTCACCTCGACGTCGGCGGAGAACATGGAGTGCCTGGGAGACGTCGTCGGCCGCCTCCAAGAATCCGCACTCGAAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGAGAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAGACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAGTAGCTAATGCAAGGAACATGTAATGACATTGTTTCAGCAATTATACATAATAACTCGCGCTCCAAGACAGCAAATGCTATAATCTGAAATGGCACACACCAGCAAAGGAGAAGATTTACCTTGTGTGGCAATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTTCTATATGTGTGCTTATGAGCTCCGTATTTGTATAGTGGGTTATTCAATTCAACCCATGGTGACATAATATCATTATCTGTAAATTGGCTATAAAGACTATCTTCATCACTTTGTTCTAACTCCATTCAAAAGAAAGCAATAAAGATCCT                                                   ]
[+] EMBL AU182568             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATCCAGTGTTTCACTTCATTTCCTCTTCTATATGTGTGCTTATGAGCTCCGTATTTGTATAGTGGGTTATTCAATTCAACCCATGGTGACATAATATCATTATCTGTAAATTGGCTATAAAGACTATCTTCATCACTTTGTTCTAACTCCATTCAAAAGAAAGCAATAAAGATCCTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5979#0
ACCTCACTCTCCCATCCCCCTTCTGTTCCACGACACGGCCTGCCCACACGGCACGGTAAG
CCCAACCCAAGATGGAAGAACCCGCCGCCGCCGCCGCCTTTCCCGATCCGCCGGAGGACC
CCTCCCCCTCCCCCTCCTCCGCGCCTTCTCCGGCCGCCGCGGCGCCTCCTCCGGGGCCGA
GGGAGCTGGCGGCGGCGATGGAGGCGGTGGAGCGGGACGTCGCCGCCATCTCCGACAGCT
ACGCCTCCCTCTTCGCCTCCCTCCGCGTCGCCCTCGCCAACGTCACCTCGACGTCGGCGG
AGAACATGGAGTGCCTGGGAGACGTCGTCGGCCGCCTCCAAGAATCCGCACTCGAAGCTT
CTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGAGAGGTC
TGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAGACTTGG
CTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAGTAGCTA
ATGCAAGGAACATGTAATGACATTGTTTCAGCAATTATACATAATAACTCGCGCTCCAAG
ACAGCAAATGCTATAATCTGAAATGGCACACACCAGCAAAGGAGAAGATTTACCTTGTGT
GGCAATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTTCTATATGTGTGCTTA
TGAGCTCCGTATTTGTATAGTGGGTTATTCAATTCAACCCATGGTGACATAATATCATTA
TCTGTAAATTGGCTATAAAGACTATCTTCATCACTTTGTTCTAACTCCATTCAAAAGAAA
GCAATAAAGATCCTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

consensusID : consensus_5979#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [TCTGAATGCTAATTCTTGTATGTTAGTAGTTTGCATCCGGACATGGTGCCCTTATTTTGATATTGTAGTTGGCAATTCGATCATTTCGCCAGGTTTGCTTGCGCATTGGACTGTCATATTTTCTCTTTGTACAGTTGGGGTGTCTAATGTTGATTGTATCGTTGGTTGGTTGCTTTATTTTTCTGGATAAAAAAGAATGATTAGATTCGACCAGGTGGCGATTTTTACCTTTTTACTCTGTTCCTGCAGCACTCGAAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGAGAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAGACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAGTATCTAATGCAAGGAACTTGTAATGACATTGTNTCAGCAATNATACATAATAACTCGCGCTCCAAGACAGCAAATGCTATAATCTGAAGTGGCACACACCAACAAAGGAGACGATGTACCCTGTGTGGCATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTCTA]

[+] EMBL CA753504             [TCTGAATGCTAATTCTTGTATGTTAGTAGTTTGCATCCGGACATGGTGCCCTTATTTTGATATTGTAGTTGGCAATTCGATCATTTCGCCAGGTTTGCTTGCGCATTGGACTGTCATATTTTCTCTTTGTACAGTTGGGGTGTCTAATGTTGATTGTATCGTTGGTTGGTTGCTTTATTTTTCTGGATAAAAAAGAATGATTAGATTCGACCAGGTGGCGATTTTTACCTTTTTACTCTGTTCCTGCAGCACTCGAAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGAGAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAGACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAGTATCTAATGCAAGGAACTTGTAATGACATTGTNTCAGCAATNATACATAATAACTCGCGCTCCAAGACAGCAAATGCTATAATCTGAAGTGGCACACACCAACAAAGGAGACGATGTACCCTGTGTGGCATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTCTA]




>consensus_5979#1
TCTGAATGCTAATTCTTGTATGTTAGTAGTTTGCATCCGGACATGGTGCCCTTATTTTGA
TATTGTAGTTGGCAATTCGATCATTTCGCCAGGTTTGCTTGCGCATTGGACTGTCATATT
TTCTCTTTGTACAGTTGGGGTGTCTAATGTTGATTGTATCGTTGGTTGGTTGCTTTATTT
TTCTGGATAAAAAAGAATGATTAGATTCGACCAGGTGGCGATTTTTACCTTTTTACTCTG
TTCCTGCAGCACTCGAAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGT
TGAATGAGGAAATGAGAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGA
ATGTTGATTCACTAGACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTG
TTATCCAGTAGGCAGTATCTAATGCAAGGAACTTGTAATGACATTGTNTCAGCAATNATA
CATAATAACTCGCGCTCCAAGACAGCAAATGCTATAATCTGAAGTGGCACACACCAACAA
AGGAGACGATGTACCCTGTGTGGCATATAAAATACTACATCCAGTGTTTCACTTCATTTC
CTCTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5979#0      ACCTCACTCTCCCATCCCCCTTCTGTTCCACGACACGGCCTGCCCACACGGCACGGTAAG 60
consensus_5979#1      ------------------------------------------------------------
                                                                                  

consensus_5979#0      CCCAACCCAAGATGGAAGAACCCGCCGCCGCCGCCGCCTTTCCCGATCCGCCGGAGGACC 120
consensus_5979#1      ----------------------------------------TCTGAAT--GCTAATTCTTG 18
                                                              **   **  **         

consensus_5979#0      CCTCCCCCTCCCCCTCCTCCGCGCCTTCTCCGGCCGCCGCGGCGCCTCCTCCGG-GGCCG 179
consensus_5979#1      TATGTTAGTAGTTTGCATCCGGACATGGTGCCCTTATTTTGATATTGTAGTTGGCAATTC 78
                        *     *      * ****  * *  * *         *           **      

consensus_5979#0      AGGGAGCTGGCGGCGGCGATGGAGGCGGTGGAGCGGGACGTCGCCGCCATCTCCGACAGC 239
consensus_5979#1      GATCATTTCGCCAGGTTTGCTTGCGCATTGGACTGTCATATTTTCTCTTTGTACAGTTGG 138
                          *  * **   *         **  ****  *  *  *   * *  * * *    * 

consensus_5979#0      TACGCCTCCCTCTTCGCCTCCCTCCGCGTCGCCCTCGCCAACGTCACCTCGACGTCGGCG 299
consensus_5979#1      GGTGTCTAATGTTGATTGTATCGTTGGTTGG---TTGCTTTATTTTTCTGGATAAAAAAG 195
                         * **     *     *  *   *  * *   * **     *   ** **       *

consensus_5979#0      GAGAACATGGAGTGCCTGGGAGACGTCGTCGGCCGCCTCCAAGAATCC-----GCACTCG 354
consensus_5979#1      AATGATTAGATTCGACCAGGTGGCGATTTTTACCTTTTTACTCTGTTCCTGCAGCACTCG 255
                       *  *   *    * *  ** * **   *   **   *       * *     *******

consensus_5979#0      AAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGA 414
consensus_5979#1      AAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGA 315
                      ************************************************************

consensus_5979#0      GAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAG 474
consensus_5979#1      GAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAG 375
                      ************************************************************

consensus_5979#0      ACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAG 534
consensus_5979#1      ACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAG 435
                      ************************************************************

consensus_5979#0      TAGCTAATGCAAGGAACATGTAATGACATTGTTTCAGCAATTATACATAATAACTCGCGC 594
consensus_5979#1      TATCTAATGCAAGGAACTTGTAATGACATTGTNTCAGCAATNATACATAATAACTCGCGC 495
                      ** ************** ************** ******** ******************

consensus_5979#0      TCCAAGACAGCAAATGCTATAATCTGAAATGGCACACACCAGCAAAGGAGAAGATTTACC 654
consensus_5979#1      TCCAAGACAGCAAATGCTATAATCTGAAGTGGCACACACCAACAAAGGAGACGATGTACC 555
                      **************************** ************ ********* *** ****

consensus_5979#0      TTGTGTGGCAATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTTCTATATGTG 714
consensus_5979#1      CTGTGTGGCA-TATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCT-CTA------ 607
                       ********* *************************************** ***      

consensus_5979#0      TGCTTATGAGCTCCGTATTTGTATAGTGGGTTATTCAATTCAACCCATGGTGACATAATA 774
consensus_5979#1      ------------------------------------------------------------
                                                                                  

consensus_5979#0      TCATTATCTGTAAATTGGCTATAAAGACTATCTTCATCACTTTGTTCTAACTCCATTCAA 834
consensus_5979#1      ------------------------------------------------------------
                                                                                  

consensus_5979#0      AAGAAAGCAATAAAGATCCTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 894
consensus_5979#1      ------------------------------------------------------------
                                                                                  

consensus_5979#0      AAAAAAAAAAA 905
consensus_5979#1      -----------