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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1360 fasta sequence
[ACACCCCGCGCGCGTTCTCCCCTCGCCCGCCGCCTGCGCGCCTATCTCCGCCGCGCGAGAGGTGGCGCGGTGCCCAGCGCGCGTCCTGCTGCTTCCACCGCGTCCTCGCCTGCCTGCCTGCCGTGCAAATGGGATGTAAGCGAGAATTCAAACTGGACATATTTGGCCATTTTGAAACTTGAGGAACCAGCTTGTTTGGCAACTCGAGGGAAGGAGATTGGGAGTTTACACGAGAGTATTAATGATCCCACAAGTAGAATTTTGATGTTGGCAAAATCAGGGTCTTTGAGATAGCTTACCCTTTTGGGCTAGAGAATGTGGAATTTCGCGTCCAGTGCTTGGGGATCTGGTTTAGGGAAGAAGAACACTCCCAACTGCACCCCGTCCAATGGTGATTGCTCTGATGATGAGGCATCTTCGTGTACAAGCAGGGAAGAAGGCCTTGAATGCCCCATATGTTGGGAGTCCTTCAACATAGTGGAGAATGTGCCATATGTACTATGGTGTGGCCACACCATGTGCAAGAACTGCATCCTAGGACTTCAATGGGCTATCATCAAGGTTCCGACGGTGCCAATCCAGCTACCATTCTTTGTCTCCTGTCCCTGGTGCAATCTCCTGTCGCTCCGCATTATTTACAAAGGGAATCTCGCATTTCCACGCAAAAACTACTTCCTCCTTTGGATGGTTGAGGGGATGAATGGTGAGCGAGCCAGATCGCGCTCTGCTATTCATAGTGAGCAACAAACTACATGGCTCTCAAGTAGCAGTAGGGCAAGTGGAAATGAAGGTTATTCGAATCCCATCAGACGTCCACTCCCACCACCGGTTGAAACACAATCCCCCAGTGTGAACCATGCCAATCATGGGGTCCCCATCTTGAATGCAGAGAGGGTACAGGCGTTGTTGCGCAAGTCGCTGTCCTTCTTGGTTCACCTGACTGCCAAGTTTCCCCTGGTGTTCATTTTCCTCCTCATAGTGCTCTATGCAATCCCTGCTAGTGCAGCTGTCTTGTTATTATACATCCTTATCACCGTGTTATTTGCTCTGCCCTCCTTCTTGATCCTGTATTTTGCTTACCCTAGCCTAGACTGGCTTGTTAGAGAAATCTTTGCTTGAGATTTCCTTTACAAAACACTGCTGGCGAAATCTCCACGCTGTTGTTGGATCTGTGTATCTGAACTGAATTCTTTCTGCTCTTTCATGTCCTTGTACGTGTAAATGTTCCAAGGACATGCGTGCCCTTGTTAGCTTTTTTTTCTTTTTCTTTTGGTGTTACAGTTGTATATTTGGAAACAGTAGAAAGCCAATGTCTGTCCTCTGTAGACATGATCACTCATCTCCTAGTACAGCCTGATCT]
[+] EMBL AK111492 [ACACCCCGCGCGCGTTCTCCCCTCGCCCGCCGCCTGCGCGCCTATCTCCGCCGCGCGAGAGGTGGCGCGGTGCCCAGCGCGCGTCCTGCTGCTTCCACCGCGTCCTCGCCTGCCTGCCTGCCGTGCAAATGGGATGTAAGCGAGAATTCAAACTGGACATATTTGGCCATTTTGAAACTTGAGGAACCAGCTTGTTTGGCAACTCGAGGGAAGGAGATTGGGAGTTTACACGAGAGTATTAATGATCCCACAAGTAGAATTTTGATGTTGGCAAAATCAGGGTCTTTGAGATAGCTTACCCTTTTGGGCTAGAGAATGTGGAATTTCGCGTCCAGTGCTTGGGGATCTGGTTTAGGGAAGAAGAACACTCCCAACTGCACCCCGTCCAATGGTGATTGCTCTGATGATGAGGCATCTTCGTGTACAAGCAGGGAAGAAGGCCTTGAATGCCCCATATGTTGGGAGTCCTTCAACATAGTGGAGAATGTGCCATATGTACTATGGTGTGGCCACACCATGTGCAAGAACTGCATCCTAGGACTTCAATGGGCTATCATCAAGGTTCCGACGGTGCCAATCCAGCTACCATTCTTTGTCTCCTGTCCCTGGTGCAATCTCCTGTCGCTCCGCATTATTTACAAAGGGAATCTCGCATTTCCACGCAAAAACTACTTCCTCCTTTGGATGGTTGAGGGGATGAATGGTGAGCGAGCCAGATCGCGCTCTGCTATTCATAGTGAGCAACAAACTACATGGCTCTCAAGTAGCAGTAGGGCAAGTGGAAATGAAGGTTATTCGAATCCCATCAGACGTCCACTCCCACCACCGGTTGAAACACAATCCCCCAGTGTGAACCATGCCAATCATGGGGTCCCCATCTTGAATGCAGAGAGGGTACAGGCGTTGTTGCGCAAGTCGCTGTCCTTCTTGGTTCACCTGACTGCCAAGTTTCCCCTGGTGTTCATTTTCCTCCTCATAGTGCTCTATGCAATCCCTGCTAGTGCAGCTGTCTTGTTATTATACATCCTTATCACCGTGTTATTTGCTCTGCCCTCCTTCTTGATCCTGTATTTTGCTTACCCTAGCCTAGACTGGCTTGTTAGAGAAATCTTTGCTTGAGATTTCCTTTACAAAACACTGCTGGCGAAATCTCCACGCTGTTGTTGGATCTGTGTATCTGAACTGAATTCTTTCTGCTCTTTCATGTCCTTGTACGTGTAAATGTTCCAAGGACATGCGTGCCCTTGTTAGCTTTTTTTTCTTTTTCTTTTGGTGTTACAGTTGTATATTTGGAAACAGTAGAAAGCCAATGTCTGTCCTCTGTAGACATGATCACTCATCTCCTAGTACAGCCTGATCT]
consensusID : consensus_5985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 868 fasta sequence
[TGCCCAGCGCGCGTCCTGCTGCTTCCACCGCGTCCTCGTCTGCCTGCCTGCCGATCCCACAAGTAGAATTTTGATGTTGGCAAAATCAGGGTCTTTGAGATAGCTTACCCTTTTGGGCTAGAGAATATGGAATTTCGCGTCCAGTGCTTGGGGATCTGGTTTAGGGAAGAGGAACACTCCCAACTGCACCCCGTCCAATGGTGATTGCTCTGGTGATGAGGCATCTTCGTGTACAAGCAGGGAAGAAGGCCTTGAATGCCCCATATGTTGGGAGTCCTTCAACATAGTGGAGAATGTGCCATATGTACTATGGTGTGGCCACACCATGTGCAAGAACTGCATCCTAGGACTTCAATGGGCTATCATCAAGGTTCCGACGGTGCCAATCCAGCTACCATTCTTTGTCTCCTGTCCCTGGTGCAACCTCCTGTCGCTCCGCATTATTTACAAAGGGAATCTCGCATTTCCACGCAAAAACTACTTCCTCCTTTGGATGGTTGAGGGGATGAATGGTGAGCGAGCCAGATCGCGCTCCGCTATTCATAGTGAGCAACAAACTACATGGCTCTCAAGTAGCAGTAGGGCAAGTGGAAATGAAAGGTATTCGAATNCCATCAGACGTCCACTTCCACCACCGGNTGNAACACAATCCCCCAGNGNGAACCATGCCAATCATGGGGTCCCCATTNTTGAATGCANAAAGGTACAGGCGTCGTTGCGCAAGTCGCTGGCCCTTNTGGGTTACCTGACTGGCAAGTTTCCCCTGGGGGTCATTTTCCTCCTCAAANGCTCTATGCAATCCCTGNTAGGGCAGCTGGCATGTTNTTTACATCCTTAAAACCGGGNTTTTGGTTTGGCCCNCCTNNTG]
[+] EMBL CA767023 [TGCCCAGCGCGCGTCCTGCTGCTTCCACCGCGTCCTCGTCTGCCTGCCTGCCGATCCCACAAGTAGAATTTTGATGTTGGCAAAATCAGGGTCTTTGAGATAGCTTACCCTTTTGGGCTAGAGAATATGGAATTTCGCGTCCAGTGCTTGGGGATCTGGTTTAGGGAAGAGGAACACTCCCAACTGCACCCCGTCCAATGGTGATTGCTCTGGTGATGAGGCATCTTCGTGTACAAGCAGGGAAGAAGGCCTTGAATGCCCCATATGTTGGGAGTCCTTCAACATAGTGGAGAATGTGCCATATGTACTATGGTGTGGCCACACCATGTGCAAGAACTGCATCCTAGGACTTCAATGGGCTATCATCAAGGTTCCGACGGTGCCAATCCAGCTACCATTCTTTGTCTCCTGTCCCTGGTGCAACCTCCTGTCGCTCCGCATTATTTACAAAGGGAATCTCGCATTTCCACGCAAAAACTACTTCCTCCTTTGGATGGTTGAGGGGATGAATGGTGAGCGAGCCAGATCGCGCTCCGCTATTCATAGTGAGCAACAAACTACATGGCTCTCAAGTAGCAGTAGGGCAAGTGGAAATGAAAGGTATTCGAATNCCATCAGACGTCCACTTCCACCACCGGNTGNAACACAATCCCCCAGNGNGAACCATGCCAATCATGGGGTCCCCATTNTTGAATGCANAAAGGTACAGGCGTCGTTGCGCAAGTCGCTGGCCCTTNTGGGTTACCTGACTGGCAAGTTTCCCCTGGGGGTCATTTTCCTCCTCAAANGCTCTATGCAATCCCTGNTAGGGCAGCTGGCATGTTNTTTACATCCTTAAAACCGGGNTTTTGGTTTGGCCCNCCTNNTG]
consensusID : consensus_5985#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[GNTCNCNGGGGGGCTTAGAAAAGGATCCGGGNGGATGAGGTAAGGGACAAAANGGTTCAGACATGGCAAGGGANGAGGTATTGATCCANTCAGANTTCAATCCACCACGGTGGAANANAATCCCCAGTGGGACCAAGCANTCAGGGGGTCCNATNTGGAAGCAGAGAGGGNACAGGGTGTGGCGCAAGTCGCTGTCCTTCTGGGTTCACCTGATGCCAAGTTTCCCCTGGTGTTCATTTTCTTCTTCATAGTGCTCTATGCAATCCCTGCTAGTGCAGCTGTCTTGTTATTAAACATCCTTATCACCGTGTTATTTGCTCTGCCCTCCTTCTTGATCCTGTATTTTGCTTACCCTAGCCTAGACTGGCTTGTTAGAGAAATCTTTGCTTGAGATTTCCTTTACAAAACACTGCTGGCGAAATTTCCACGCTGTTGTTGGATCTGTGTATCTGAACTGAATTCTTTCTGCTCTTTCATGTCCTTGTACGTGTAAATGTTCCAAGGACATGCGTGCCCTTGTTAGCTTTTTTTTCTTTTTCTTTTGGTGTTACAGTTGTATATTTGGAAACAGTAGAAAGCCAATGTCTGTCC]
[-] EMBL BE229091 [GNTCNCNGGGGGGCTTAGAAAAGGATCCGGGNGGATGAGGTAAGGGACAAAANGGTTCAGACATGGCAAGGGANGAGGTATTGATCCANTCAGANTTCAATCCACCACGGTGGAANANAATCCCCAGTGGGACCAAGCANTCAGGGGGTCCNATNTGGAAGCAGAGAGGGNACAGGGTGTGGCGCAAGTCGCTGTCCTTCTGGGTTCACCTGATGCCAAGTTTCCCCTGGTGTTCATTTTCTTCTTCATAGTGCTCTATGCAATCCCTGCTAGTGCAGCTGTCTTGTTATTAAACATCCTTATCACCGTGTTATTTGCTCTGCCCTCCTTCTTGATCCTGTATTTTGCTTACCCTAGCCTAGACTGGCTTGTTAGAGAAATCTTTGCTTGAGATTTCCTTTACAAAACACTGCTGGCGAAATTTCCACGCTGTTGTTGGATCTGTGTATCTGAACTGAATTCTTTCTGCTCTTTCATGTCCTTGTACGTGTAAATGTTCCAAGGACATGCGTGCCCTTGTTAGCTTTTTTTTCTTTTTCTTTTGGTGTTACAGTTGTATATTTGGAAACAGTAGAAAGCCAATGTCTGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5985#0 ACACCCCGCGCGCGTTCTCCCCTCGCCCGCCGCCTGCGCGCCTATCTCCGCCGCGCGAGA 60
consensus_5985#1 ------------------------------------------------------------
consensus_5985#2 ------------------------------------------------------------
consensus_5985#0 GGTGGCGCGGTGCCCAGCGCGCGTCCTGCTGCTTCCACCGCGTCCTCGCCTGCCTGCCTG 120
consensus_5985#1 ------------------------------------------------------------
consensus_5985#2 ------------------------------------------------------------
consensus_5985#0 CCGTGCAAATGGGATGTAAGCGAGAATTCAAACTGGACATATTTGGCCATTTTGAAACTT 180
consensus_5985#1 ------------------------------------------------------------
consensus_5985#2 ------------------------------------------------------------
consensus_5985#0 GAGGAACCAGCTTGTTTGGCAACTCGAGGGAAGGAGATTGGGAGTTTACACGAGAGTATT 240
consensus_5985#1 --------TGCCCAGCGCGCGTCCTGCTGCTTCCA--CCGCGTCCTCGTCTGCCTGC-CT 49
consensus_5985#2 ------------------------------------------------------------
consensus_5985#0 AATGATCCCACAAGTAGAATTTTGATGTTGGCAAAATCAGGGTCTTTGAGATAGCTTACC 300
consensus_5985#1 GCCGATCCCACAAGTAGAATTTTGATGTTGGCAAAATCAGGGTCTTTGAGATAGCTTACC 109
consensus_5985#2 ----------------------------------------GNTCNCNGGGG-GGCTTAGA 19
* ** * * *****
consensus_5985#0 CTTTTGGGCTAGAGAATGTGGAATTTCGCGTCCAGTGCTTGGGGATCTGGTTTAGGGAAG 360
consensus_5985#1 CTTTTGGGCTAGAGAATATGGAATTTCGCGTCCAGTGCTTGGGGATCTGGTTTAGGGAAG 169
consensus_5985#2 AA--AGGATCCGGGNGGATGAGGTAAGGGACAAAANGGTTCAG-ACATGGCA-AGGGANG 75
** * * ** * * * * ** * * *** ***** *
consensus_5985#0 AAGAACACTCCCAACTGCACCCCGTCCAATGGTGATTGCTCTGATGATGAGGCATCTTCG 420
consensus_5985#1 AGGAACACTCCCAACTGCACCCCGTCCAATGGTGATTGCTCTGGTGATGAGGCATCTTCG 229
consensus_5985#2 AGGTATTGATCCANTCAGAN----TTCAAT-----CCACCACGGTGGAANANAATCCCC- 125
* * * *** * * **** * * ** *** *
consensus_5985#0 TGTACAAGCAGGGAAGAAGGCCTTGAATGCCCCATATGTTGGGAGTCCTTCAACATAGTG 480
consensus_5985#1 TGTACAAGCAGGGAAGAAGGCCTTGAATGCCCCATATGTTGGGAGTCCTTCAACATAGTG 289
consensus_5985#2 ------AGTGGGACCAAGCANTCAGGGGGTCCNATNTGGAAGCAGAGAGGGNACAGGGTG 179
** ** * * * ** ** ** * ** *** ***
consensus_5985#0 GAGAATGTGCCATATGTACTATGGTGTGGCCACACCATGTGCAAGAACTGCATCCTAGGA 540
consensus_5985#1 GAGAATGTGCCATATGTACTATGGTGTGGCCACACCATGTGCAAGAACTGCATCCTAGGA 349
consensus_5985#2 TGGCGCAAGTCGC-TGTCCT----TCTGGGTTCACCTGATGCCAAGTTT---CCCCTGGT 231
* * * *** ** * *** **** *** * * ** **
consensus_5985#0 CTTCAATGGGCTATCATCAAGGTTCCGACGGTGCCAATCCAGCTACCATTCTTTGTCTCC 600
consensus_5985#1 CTTCAATGGGCTATCATCAAGGTTCCGACGGTGCCAATCCAGCTACCATTCTTTGTCTCC 409
consensus_5985#2 GTTCATT--TTCTTCTTCATAGTGCT--CTATGC-AATCC--CTGCTAGTGCAGCTGTCT 284
**** * ** *** ** * * *** ***** ** * * * * **
consensus_5985#0 TGTCCCTGGTGCAATCTCCTGTCGCTCCGCATTATTTACAAAGGGAATCTCGCATTTCCA 660
consensus_5985#1 TGTCCCTGGTGCAACCTCCTGTCGCTCCGCATTATTTACAAAGGGAATCTCGCATTTCCA 469
consensus_5985#2 TGTTATTA----AACATCCT-TATCACCGTGTTATTTGC----------TCTGCCCTCCT 329
*** * ** **** * * *** ****** * ** ***
consensus_5985#0 CGCAAAAACTACTTCCTCCTTTGGATGGTTGAGGGGATGAATGGTGAGCGAGCCAGATCG 720
consensus_5985#1 CGCAAAAACTACTTCCTCCTTTGGATGGTTGAGGGGATGAATGGTGAGCGAGCCAGATCG 529
consensus_5985#2 TCTTGATCCTGTATTTTGCTTACCCTAGCCTAGAC--TGGCTTGTTAGAGAA--ATCTTT 385
* ** * * *** * * ** ** * ** ** ** * *
consensus_5985#0 CGCTCTGCTATTCATAGTGAGCAACAAACTACATGGCTCTCAAGTAGCAGTAGGGCAAGT 780
consensus_5985#1 CGCTCCGCTATTCATAGTGAGCAACAAACTACATGGCTCTCAAGTAGCAGTAGGGCAAGT 589
consensus_5985#2 GCTTGAGATTTCCTTTACAAAACACTGCTGGCGAAATTTCCACGCTGTTGTTGGATCTGT 445
* * * * * * * ** * * ** * * ** ** **
consensus_5985#0 GGAAATGAAGGTTATTCGAATCCCATCAGACGTCCACTCCCACCACCGGTTGAAACACAA 840
consensus_5985#1 GGAAATGAAAGGTATTCGAATNCCATCAGACGTCCACTTCCACCACCGGNTGNAACACAA 649
consensus_5985#2 GTATCTGAA------CTGAATTCTTTC-----TGCTCTTTCATGTCCTTGTACGTGTAAA 494
* * **** **** * ** * * ** ** ** * **
consensus_5985#0 TCCCCCAGTGTGAACCATGCCAATCATGGGGTCCCCAT-CTTGAATGCAGAGAGGGTACA 899
consensus_5985#1 TCCCCCAGNGNGAACCATGCCAATCATGGGGTCCCCATTNTTGAATGCANAAAGG-TACA 708
consensus_5985#2 TGTTCCAAGGACATGCGTGCCCTTGTTAGCTTTTTTTTCTTTT--TCTTTTGGTGTTACA 552
* *** * * * **** * * * * * ** * * ****
consensus_5985#0 GGCGTTGTTGCGCAAGTCGCTGTCCTTCTTGGTTCACCTGACTGCCAAGTTTCCCCTGGT 959
consensus_5985#1 GGCGTCGTTGCGCAAGTCGCTGGCCCTTNTGGGTTACCTGACTGGCAAGTTTCCCCTGGG 768
consensus_5985#2 GTTGTATATTTGGAAACAGTAGAAAGCCAATGTCTGTCC--------------------- 591
* ** * * ** * * * *
consensus_5985#0 GTTCATTTTCCTCCTCATAGTGCTCTATGCAATCCCTGCTAGTGCAGCTGTCTTGTTATT 1019
consensus_5985#1 GGTCATTTTCCTCCTCA-AANGCTCTATGCAATCCCTGNTAGGGCAGCTGGCATGTTNTT 827
consensus_5985#2 ------------------------------------------------------------
consensus_5985#0 ATACATCCTTATCACCGTGTTATTTGCTCTGCCCTCCTTCTTGATCCTGTATTTTGCTTA 1079
consensus_5985#1 -TACATCCTTAAAACCGGGNTTTTGGTTTGGCCCNCCTNNTG------------------ 868
consensus_5985#2 ------------------------------------------------------------
consensus_5985#0 CCCTAGCCTAGACTGGCTTGTTAGAGAAATCTTTGCTTGAGATTTCCTTTACAAAACACT 1139
consensus_5985#1 ------------------------------------------------------------
consensus_5985#2 ------------------------------------------------------------
consensus_5985#0 GCTGGCGAAATCTCCACGCTGTTGTTGGATCTGTGTATCTGAACTGAATTCTTTCTGCTC 1199
consensus_5985#1 ------------------------------------------------------------
consensus_5985#2 ------------------------------------------------------------
consensus_5985#0 TTTCATGTCCTTGTACGTGTAAATGTTCCAAGGACATGCGTGCCCTTGTTAGCTTTTTTT 1259
consensus_5985#1 ------------------------------------------------------------
consensus_5985#2 ------------------------------------------------------------
consensus_5985#0 TCTTTTTCTTTTGGTGTTACAGTTGTATATTTGGAAACAGTAGAAAGCCAATGTCTGTCC 1319
consensus_5985#1 ------------------------------------------------------------
consensus_5985#2 ------------------------------------------------------------
consensus_5985#0 TCTGTAGACATGATCACTCATCTCCTAGTACAGCCTGATCT 1360
consensus_5985#1 -----------------------------------------
consensus_5985#2 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||