cluster # 5986

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Oryza sativa
cluster # 5986 cluster # 5986 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5986#0 length = 1112 sequences # 1

consensus_5986#1 length = 1050 sequences # 2

consensusID : consensus_5986#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1112
fasta sequence

                              [AGCTCCCCGTCCAACCGATCGTACGTCTCCTCAGCTCATCCGCTTGCCTCGTCGCTGCTGCTGCTGCTGATCCACAAGCGTTCGTCGGAGATGAACGACCTGTTCTCGTCGAGCTCGTTCAAGAAGTATGCGGACGCGAGCCCGGCGAGCGGCGTCGGCGGCAGCGACATGGAGGCCGGCGGCGAGGGCGTGGTGAACCTGGACAGGTTCTTCGAGGACGTGGAGGGGGTGAAGGAGGACATGAAGGGGCTGGAGGCGCTGTACAAGCGGCTGCAGTCGACGAACGAGGAGACGAAGACGGCGCACGACGCCCGCGCCGTGAAGGCCCTCCGCTCCCGCATGGACGGCGACGTCGAGCAGGTGCTCCGCCGCGCCAAGGCCGTCAAGGGCAAGCTCGAGGCCCTCGACAGAGACAACGCCACCTCCCGCAAGGTCCCCGGCTGCGGCCCCGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTCGGCAAGAAGCTCAAGGACATCATGGACGACTTCCAGGGGCTGAGGACGAGGATGGCGGCGGAGTACAAGGAGACGGTGGCGAGGAGGTACTACACGGTGACGGGGGAGAAGGCGGAGGACAGCACGATCGATTCGCTCATCGAGTCGGGGGAGAGCGAGTCGTTCCTGCAGAAGGCGATCCAGGAGCAAGGGCGGGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGCACGACGCCGTCAAGGACATCGAGCGCAGCCTGCTCGACCTGCACCAGGTGTTCCTCGACATGGCGGCGCTCGTCGAGGCCCAGGGACACCAGCTCAACGACATCGAGAGCCACGTCGCGCACGCCAGCTCCTTCGTCCGCAGGGGCACCGTCGAGCTCGAGGTGGCGCGGGAGCACCAGAAGAGCAGCCGCAAGTGGGCGTGTGTCGCCGTCCTCGCCGGCATCATCCTCATCGCCGTCCTCATCCTCCCGGTGCTCATCAACCTCCGCATCTTGACGCTCAGATGATTCATTCATCATTTCCTCCCTAGCTAACCTGCTAACTCAGATGTGTCAAATTAATTTATCTACTATTTTTTTTCTCCATCATGTATGTTAATTTC]

[+] EMBL AK107080             [AGCTCCCCGTCCAACCGATCGTACGTCTCCTCAGCTCATCCGCTTGCCTCGTCGCTGCTGCTGCTGCTGATCCACAAGCGTTCGTCGGAGATGAACGACCTGTTCTCGTCGAGCTCGTTCAAGAAGTATGCGGACGCGAGCCCGGCGAGCGGCGTCGGCGGCAGCGACATGGAGGCCGGCGGCGAGGGCGTGGTGAACCTGGACAGGTTCTTCGAGGACGTGGAGGGGGTGAAGGAGGACATGAAGGGGCTGGAGGCGCTGTACAAGCGGCTGCAGTCGACGAACGAGGAGACGAAGACGGCGCACGACGCCCGCGCCGTGAAGGCCCTCCGCTCCCGCATGGACGGCGACGTCGAGCAGGTGCTCCGCCGCGCCAAGGCCGTCAAGGGCAAGCTCGAGGCCCTCGACAGAGACAACGCCACCTCCCGCAAGGTCCCCGGCTGCGGCCCCGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTCGGCAAGAAGCTCAAGGACATCATGGACGACTTCCAGGGGCTGAGGACGAGGATGGCGGCGGAGTACAAGGAGACGGTGGCGAGGAGGTACTACACGGTGACGGGGGAGAAGGCGGAGGACAGCACGATCGATTCGCTCATCGAGTCGGGGGAGAGCGAGTCGTTCCTGCAGAAGGCGATCCAGGAGCAAGGGCGGGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGCACGACGCCGTCAAGGACATCGAGCGCAGCCTGCTCGACCTGCACCAGGTGTTCCTCGACATGGCGGCGCTCGTCGAGGCCCAGGGACACCAGCTCAACGACATCGAGAGCCACGTCGCGCACGCCAGCTCCTTCGTCCGCAGGGGCACCGTCGAGCTCGAGGTGGCGCGGGAGCACCAGAAGAGCAGCCGCAAGTGGGCGTGTGTCGCCGTCCTCGCCGGCATCATCCTCATCGCCGTCCTCATCCTCCCGGTGCTCATCAACCTCCGCATCTTGACGCTCAGATGATTCATTCATCATTTCCTCCCTAGCTAACCTGCTAACTCAGATGTGTCAAATTAATTTATCTACTATTTTTTTTCTCCATCATGTATGTTAATTTC]




>consensus_5986#0
AGCTCCCCGTCCAACCGATCGTACGTCTCCTCAGCTCATCCGCTTGCCTCGTCGCTGCTG
CTGCTGCTGATCCACAAGCGTTCGTCGGAGATGAACGACCTGTTCTCGTCGAGCTCGTTC
AAGAAGTATGCGGACGCGAGCCCGGCGAGCGGCGTCGGCGGCAGCGACATGGAGGCCGGC
GGCGAGGGCGTGGTGAACCTGGACAGGTTCTTCGAGGACGTGGAGGGGGTGAAGGAGGAC
ATGAAGGGGCTGGAGGCGCTGTACAAGCGGCTGCAGTCGACGAACGAGGAGACGAAGACG
GCGCACGACGCCCGCGCCGTGAAGGCCCTCCGCTCCCGCATGGACGGCGACGTCGAGCAG
GTGCTCCGCCGCGCCAAGGCCGTCAAGGGCAAGCTCGAGGCCCTCGACAGAGACAACGCC
ACCTCCCGCAAGGTCCCCGGCTGCGGCCCCGGCTCCTCCACCGACCGCACCCGCACCTCC
GTCGTCGCCGGCCTCGGCAAGAAGCTCAAGGACATCATGGACGACTTCCAGGGGCTGAGG
ACGAGGATGGCGGCGGAGTACAAGGAGACGGTGGCGAGGAGGTACTACACGGTGACGGGG
GAGAAGGCGGAGGACAGCACGATCGATTCGCTCATCGAGTCGGGGGAGAGCGAGTCGTTC
CTGCAGAAGGCGATCCAGGAGCAAGGGCGGGGGCAGGTGATGGACACCATCTCGGAGATC
CAGGAGCGGCACGACGCCGTCAAGGACATCGAGCGCAGCCTGCTCGACCTGCACCAGGTG
TTCCTCGACATGGCGGCGCTCGTCGAGGCCCAGGGACACCAGCTCAACGACATCGAGAGC
CACGTCGCGCACGCCAGCTCCTTCGTCCGCAGGGGCACCGTCGAGCTCGAGGTGGCGCGG
GAGCACCAGAAGAGCAGCCGCAAGTGGGCGTGTGTCGCCGTCCTCGCCGGCATCATCCTC
ATCGCCGTCCTCATCCTCCCGGTGCTCATCAACCTCCGCATCTTGACGCTCAGATGATTC
ATTCATCATTTCCTCCCTAGCTAACCTGCTAACTCAGATGTGTCAAATTAATTTATCTAC
TATTTTTTTTCTCCATCATGTATGTTAATTTC

consensusID : consensus_5986#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1050
fasta sequence

                              [CCGACCCCTTCAACTCCGCGTCTCCTCCTCCTCCCCCCTCTTAACTCCTCCCTCCTCCCGATCCAAGAAACCTGGAGCAAATCGTGGCCGATCTTGTGTTCTAGTGAGTTGCTGCAGCCATGAACAATCTCTTCTCTAGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGACGGGGATATTGAATCGGGCGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGTGGGGGCGAGCCTTGATAGGTTCTTCAAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTGGAGCGGATCCAGCGGTCGCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCGGCGGCGGTGCGCGCGCTGCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAACAAGGCCAAGGGGGTGAAGCTCCGCCTCGAGTAGTTCGACCGCGCCAACGCCGCCAACCGCTTCGTCCCCGGGAGCGGCCCGGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTCCGCAAGAAGCTCCGCGACTCCATGGAATCCTTCTCCTCCCTCCGCGCCCGCATCTCCTCCGAGTACCGGGAGACCGTGGCGCGGCGGTACTACACCGTCACCGGCGAGCAGCCCGACGAGGCGACGCTCGACAACCTCGCCGAGACCGGGGAAGGGGAGCGGTTCCTGCAGCGCGCGATCGCCGAGCAGGGCCGCGGCGAGGTGCTCGGCGTGGTCGCCGAGATCCAGGAGCGGCACGGCGCCGTGGCGGAGCTGGAACGCTCGCTGCTCGAGCTCCACCAGGTGTTCAACGACATGGCCGTGCTGGTGGCGGCGCAGGGGGAGCAGCTCGACGACATCGAGACCCATGTCGGCCGCGCGCGCTCCTTCGTCGACCGCGGCCGCGAGCAGCTGGTGGTGGCGCGGAAGCATCAGAAGAGCACCCGCAAGTGGACCTGCATCGCCATCATCATCCTGCTCGTCCTCATCCTCGTCGTCGTCCTCCCCATCGTGCTCAAGTTCGTCAACAACA]

[+] EMBL CB663201             [CCGACCCCTTCAACTCCGCGTCTCCTCCTCCTCCCCCCTCTTAACTCCTCCCTCCTCCCGATCCAAGAAACCTGGAGCAAATCGTGGCCGATCTTGTGTTCTAGTGAGTTGCTGCAGCCATGAACAATCTCTTCTCTAGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGACGGGGATATTGAATCGGGCGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGTGGGGGCGAGCCTTGATAGGTTCTTCAAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTGGAGCGGATCCAGCGGTCGCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCGGCGGCGGTGCGCGCGCTGCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAACAAGGCCAAGGGGGTGAAGCTCCGCCTCGAGTAGTTCGACCGCGCCAACGCCGCCAACCGCTTCGTCCCCGGGAGCGGCCCGGGCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK065950             [                                                                                ATCGTGGCCGATCTTGTGTTCTAGTGAGTTGCTGCAGCCATGAACAATCTCTTCTCTAGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGACGGGGATATTGAATCGGGCGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGCGGGGGCGAGCCTTGATAGGTTCTTCGAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTGGAGCGGATCCAGCGGTCGCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCGGCGGCGGTGCGCGCGCTGCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAAGAAGGCCAAGGTGGTGAAGCTCCGCCTCGAGTCGCTCGACCGCGCCAACGCCGCCAACCGCTCCGTCCCCGGGTGCGGCCCGGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTCCGCAAGAAGCTCCGCGACTCCATGGAATCCTTCTCCTCCCTCCGCGCCCGCATCTCCTCCGAGTACCGGGAGACCGTGGCGCGGCGGTACTACACCGTCACCGGCGAGCAGCCCGACGAGGCGACGCTCGACAACCTCGCCGAGACCGGGGAAGGGGAGCGGTTCCTGCAGCGCGCGATCGCCGAGCAGGGCCGCGGCGAGGTGCTCGGCGTGGTCGCCGAGATCCAGGAGCGGCACGGCGCCGTGGCGGAGCTGGAACGCTCGCTGCTCGAGCTCCACCAGGTGTTCAACGACATGGCCGTGCTGGTGGCGGCGCAGGGGGAGCAGCTCGACGACATCGAGACCCATGTCGGCCGCGCGCGCTCCTTCGTCGACCGCGGCCGCGAGCAGCTGGTGGTGGCGCGGAAGCATCAGAAGAGCACCCGCAAGTGGACCTGCATCGCCATCATCATCCTGCTCGTCCTCATCCTCGTCGTCGTCCTCCCCATCGTGCTCAAGTTCGTCAACAACA]




>consensus_5986#1
CCGACCCCTTCAACTCCGCGTCTCCTCCTCCTCCCCCCTCTTAACTCCTCCCTCCTCCCG
ATCCAAGAAACCTGGAGCAAATCGTGGCCGATCTTGTGTTCTAGTGAGTTGCTGCAGCCA
TGAACAATCTCTTCTCTAGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGACGGGG
ATATTGAATCGGGCGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGTGGGGGCGA
GCCTTGATAGGTTCTTCAAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTGGAGC
GGATCCAGCGGTCGCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCGGCGG
CGGTGCGCGCGCTGCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAACAAGGCCA
AGGGGGTGAAGCTCCGCCTCGAGTAGTTCGACCGCGCCAACGCCGCCAACCGCTTCGTCC
CCGGGAGCGGCCCGGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTCC
GCAAGAAGCTCCGCGACTCCATGGAATCCTTCTCCTCCCTCCGCGCCCGCATCTCCTCCG
AGTACCGGGAGACCGTGGCGCGGCGGTACTACACCGTCACCGGCGAGCAGCCCGACGAGG
CGACGCTCGACAACCTCGCCGAGACCGGGGAAGGGGAGCGGTTCCTGCAGCGCGCGATCG
CCGAGCAGGGCCGCGGCGAGGTGCTCGGCGTGGTCGCCGAGATCCAGGAGCGGCACGGCG
CCGTGGCGGAGCTGGAACGCTCGCTGCTCGAGCTCCACCAGGTGTTCAACGACATGGCCG
TGCTGGTGGCGGCGCAGGGGGAGCAGCTCGACGACATCGAGACCCATGTCGGCCGCGCGC
GCTCCTTCGTCGACCGCGGCCGCGAGCAGCTGGTGGTGGCGCGGAAGCATCAGAAGAGCA
CCCGCAAGTGGACCTGCATCGCCATCATCATCCTGCTCGTCCTCATCCTCGTCGTCGTCC
TCCCCATCGTGCTCAAGTTCGTCAACAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5986#0      -----------AGCTCCCCGTCCAACCGATCGTACGTCTCCTCAGCTCATCCGCTTGCCT 49
consensus_5986#1      CCGACCCCTTCAACTCCGCGTCTCCTCC-TCCTCCCCCCTCTTAACTCCTCCCTCCTCCC 59
                                 * **** ****    *  ** * *  *  ** * *** ***     ** 

consensus_5986#0      CGTCG-------CTGCTGC----TGCTGCTGATCCA-----CAAGCGT-TCGTCGGAG-- 90
consensus_5986#1      GATCCAAGAAACCTGGAGCAAATCGTGGCCGATCTTGTGTTCTAGTGAGTTGCTGCAGCC 119
                        **        ***  **     *  ** ****       * ** *  * *  * **  

consensus_5986#0      ATGAACGACCTGTTCTCGTCGAGCTCGTTCAAGAA-GTATGCGGACGCGAGCCCGGCGA- 148
consensus_5986#1      ATGAACAATCTCTTCTCT---AGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGAC 176
                      ****** * ** *****    *******  ***       ****  ***    ****** 

consensus_5986#0      -GCGGCGTCGGC---GGCAGCGACATGGAG-----GCCGGCGGCGAGGGCGT-------G 192
consensus_5986#1      GGGGATATTGAATCGGGCGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGTGGGG 236
                       * *   * *     *** *** * *****     **** ** ** *****        *

consensus_5986#0      GTGAACCTGGACAGGTTCTTCGAGGACGTGGAGGGGGTGAAGGAGGACATGAAGGGGCTG 252
consensus_5986#1      GCGAGCCTTGATAGGTTCTTCAAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTG 296
                      * ** *** ** ********* ***********  * * ***** **  *    *  ***

consensus_5986#0      GAGGCGCTGTACAAGCGGCTGCAGTCGACGAACGAGGAGACGAAGACGGCGCACGACGCC 312
consensus_5986#1      GAGCGGATCCAGCGGTCGCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCG 356
                      ***  * *  *   *  *** **     * ******* *   *** **  ********* 

consensus_5986#0      CGCGCCGTGAAGGCCCTCCGCTCCCGCATGGACGGCGACGTCGAGCAGGTGCTCCGCCGC 372
consensus_5986#1      GCGGCGGTGCGCGCGCTGCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAACAAG 416
                         ** ***   ** ** **  * ********** ********     *   **  *   

consensus_5986#0      GCCAAGGCCGTCAAGGGCAAGCTCGAGGCCCTCGACAGAGACAACGCCACCTCCCGCAAG 432
consensus_5986#1      GCCAAGGGGGTGAAGCTCCGCCTCGAGTAGTTCGACCGCGCCAACGCCGCCAACCGCTTC 476
                      *******  ** ***  *   ******    ***** * * ******* **  ****   

consensus_5986#0      GTCCCCGGCTGCGGCCCCGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGC 492
consensus_5986#1      GTCCCCGGGAGCGGCCCGGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGC 536
                      ********  ******* ******************************************

consensus_5986#0      CTCGGCAAGAAGCTCAAGGACATCATGGACGACTTCCAGGGGCTGAGGACGAGGATGGCG 552
consensus_5986#1      CTCCGCAAGAAGCTCCGCGACTCCATGGAATCCTTCTCCTCCCTCCGCGCCCGCATCTCC 596
                      *** ***********   ***  ******   ****      **  *  *  * **  * 

consensus_5986#0      GCGGAGTACAAGGAGACGGTGGCGAGGAGGTACTACACGGTGACGGGGGAGAAGGCGGAG 612
consensus_5986#1      TCCGAGTACCGGGAGACCGTGGCGCGGCGGTACTACACCGTCACCGGCGAGCAGCCCGAC 656
                       * ******  ****** ****** ** ********** ** ** ** *** ** * ** 

consensus_5986#0      GACAGCACGATCGATTCGCTCATCGAGTCGGGGGAGAGCGAGTCGTTCCTGCAGAAGGCG 672
consensus_5986#1      GAGGCGACGCTCGACAACCTCGCCGAGACCGGGGAAGGGGAGCGGTTCCTGCAGCGCGCG 716
                      **    *** ****    ***  **** * *****  * ***  **********   ***

consensus_5986#0      ATCCAGGAGCAAGGGCGGGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGCAC 732
consensus_5986#1      ATCGCCGAGCAGGGCCGCGGCGAGGTGCTCGGCGTGGTCGCCGAGATCCAGGAGCGGCAC 776
                      ***   ***** ** ** **  ***** * * *    ** * ******************

consensus_5986#0      GACGCCGTCAAGGACATCGAGCGCAGCCTGCTCGACCTGCACCAGGTGTTCCTCGACATG 792
consensus_5986#1      GGCGCCGTGGCGGAGCTGGAACGCTCGCTGCTCGAGCTCCACCAGGTGTTCAACGACATG 836
                      * ******   ***  * ** ***   ******** ** ************  *******

consensus_5986#0      GCGGCGCTCGTCGAGGCCCAGGGACACCAGCTCAACGACATCGAGAGCCACGTCGCGCAC 852
consensus_5986#1      GCCGTGCTGGTGGCGGCGCAGGGGGAGCAGCTCGACGACATCGAGACCCATGTCGGCCGC 896
                      ** * *** ** * *** *****  * ****** ************ *** ****  * *

consensus_5986#0      GCCAGCTCCTTCGTCCGCAGGGGCACCGTCGAGCTCGAGGTGGCGCGGGAGCACCAGAAG 912
consensus_5986#1      GCGCGCTCCTTCGTCGACCGCGGCCGCGAGCAGCTGGTGGTGGCGCGGAAGCATCAGAAG 956
                      **  ***********  * * ***  **   **** * ********** **** ******

consensus_5986#0      AGCAGCCGCAAGTGGGCGTGTGTCGCCGTCCTCGCCGGCATCATCCTCATCGCCGTCCTC 972
consensus_5986#1      AGCACCCGCAAGTGGACCTGCATCGCCATCATCATCCTGCTCGTCCTCATCCTCGTCGTC 1016
                      **** ********** * **  ***** ** **  *    ** ********  **** **

consensus_5986#0      ATCCTCCCGGTGCTCATCAACCTCCGCATCTTGACGCTCAGATGATTCATTCATCATTTC 1032
consensus_5986#1      GTCCTCCCCATCGTGCTCAAGTTCGTCAACAACA-------------------------- 1050
                       *******  *  *  ****  **  ** *   *                          

consensus_5986#0      CTCCCTAGCTAACCTGCTAACTCAGATGTGTCAAATTAATTTATCTACTATTTTTTTTCT 1092
consensus_5986#1      ------------------------------------------------------------
                                                                                  

consensus_5986#0      CCATCATGTATGTTAATTTC 1112
consensus_5986#1      --------------------