cluster # 5988

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Oryza sativa
cluster # 5988 cluster # 5988 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5988#0 length = 461 sequences # 3

consensusID : consensus_5988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 461
fasta sequence

                              [TCCCTACGTCATCCTGTACGTCAAGATGGCGCGTCTTGCTATGTCTCTCTGTTCCTGGGGACAAAAGAAGATCAGTCGCTTTCGCCTCCAGCTCCAGATTGCGAATGAATTGATCTTCCGTTTTGATGTGGCGCAAGAGAACCGACTCCTTTCCCCTCTT-GAACGCCGTTTCA-GGGCAATCCTGAAGGGCCGCTGCCTGG-CATTGGCGTCACTCGAACGAATCAGAGTGCGCCAG-GGGCTCGGATCTCCCAGCTCCGGGA-GGGAGACGCCAACTCCAAATACTTCCATATGAAAGTGAATGCGAGGCGCCGTAAGCTATTCATCCCAGTCTTTGAGTATGAAGGGCAGACAGCAACCTCGTAGGAAGATAAAATTGCTCT-GGCCAAGGACTATTTTCAGGGAATTTTGGGTGTGGC-GGATCCCGACTCGGCTGAGCTCCAATTCAATCAAATCTTCCCTCC]

[+] EMBL AU096098             [TCCCTACGTCATCCTGTACGTCAAGATGGCGCGTCTTGCTATGTCTCTCTGTTCCTGGGGACAAAAGAAGATCAGTCGCTTTCGCCTCCAGCTCCAGATTGCGAATGAATTGATCTTCCGTTTTGATGTGGCGCAAGAGAACCGACTCCTTTCCCCTCTT GAACGCCGTTTCA GGGCAATCCTGAAGGGCCGCTGCCTGG CATTGGCGTCACTCGAACGAATCAGAGTGCGCCAG GGGCTCGGATCTCCCAGCTCCGGGA GGGAGACGCCAACTCCAAATACTTCCATATGAAAGTGAATGCGAGGCGCCGTAAGCTATTCATCCCAGTCTTTGAGTATGAAGGGCAGACAGCAACCTCGTAGGAAGATAAAATTGCTCT GGCCAAGGACTATTTTCAGGGAATTTTGGGTGTGGC GGATCCCGACTCGGCTGAGCTCCAATTCAATCAAATCTTCCCTCC]
[+] EMBL AU075890             [TCCCTACGTCATCCTGTACGTCAAGATGGCGCGTCTTGCTATGTCTCTCTGTTCCTGGGGACAAAAGAAGATCAGTCGCTTTCGCCTCCAGCTCCAGATTGCGAATGAATTGATCTTCCGTTTTGATGTGGCGCAAGAGAACCGACTCCTTTCCCCTCTT GAACGCCGTTTCA GGGCAATCCTGAAGGGCCGCTGCCTGG CATTGGCGTCACTCGAACGAATCAGAGTGCGCCAG GGGCTCGGATCTCCCAGCTCCGGGA GGGAGACGCCAACTCCAAATACTTCCATATGAAAGTGAATGCGAGGCGCCGTAAGCTATTCATCCCAGTCTTTGAGTATGAAGGGCAGACAGCAACCTCGTAGGAAGATAAAATTGCTCT GGCCAAGGACTATTTTCAGGGAATTTTGGGTGTGGC GGATCCCGACTCGGCTGAGCTCCAATTCAATCAAATCTTCCCTC ]
[+] EMBL AU096102             [                                                    TCCTGGGGACAAAAGAAGATCAGTCGCTTTCNCCTCCAGCTCCAGATTACGAATNAATTGATCTTCCGTTTTGATGTANCGCAAGANAACCGACTCCTTTCCCCTCTTGGAACACCGTTTCAGGGGCAATCCTGAAGANCCGCTNCCTGGNCATTGGCGTCACTCGAACNAATCAGAGTGCNCCAGCNGNCTCGGATCTCCCAGCTCCGGGAGGGGAGACGCCAACTCCAAATACTTCCATATGAAAGTGAATGCGAGGCGCCGTAAGCTATTCATCCCAGTCTTTGAGTATGAAGGGCAGACAGCAACCTCGTAGGAAGATAAAATTGCTCTGGGCCAAGGACTATTTTCAGGGAATTTTGGGTGTGGCGGGATCCCGACTCGGCTGAGCTCCAATTNAATCAAATCTTCCCT  ]




>consensus_5988#0
TCCCTACGTCATCCTGTACGTCAAGATGGCGCGTCTTGCTATGTCTCTCTGTTCCTGGGG
ACAAAAGAAGATCAGTCGCTTTCGCCTCCAGCTCCAGATTGCGAATGAATTGATCTTCCG
TTTTGATGTGGCGCAAGAGAACCGACTCCTTTCCCCTCTTGAACGCCGTTTCAGGGCAAT
CCTGAAGGGCCGCTGCCTGGCATTGGCGTCACTCGAACGAATCAGAGTGCGCCAGGGGCT
CGGATCTCCCAGCTCCGGGAGGGAGACGCCAACTCCAAATACTTCCATATGAAAGTGAAT
GCGAGGCGCCGTAAGCTATTCATCCCAGTCTTTGAGTATGAAGGGCAGACAGCAACCTCG
TAGGAAGATAAAATTGCTCTGGCCAAGGACTATTTTCAGGGAATTTTGGGTGTGGCGGAT
CCCGACTCGGCTGAGCTCCAATTCAATCAAATCTTCCCTCC

clustalw multiple alignements is not computed in this case