These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence [TCCAAGCGCCCGCCTCTATATATGCGCGCCGCCACCATGTCCAGCTCCGGCAACTAGCTACTGCGAAGTGCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGTGTGGCGGCGCGATTCTGGCTAACATCATGCCGGCCACCCCACGCCCCCGCAAGTGCCGCCCCACCACCGCCACCGCCACCCCCAAGGCGACGACACCGAACGTCGTCGTCGTCGTCAACCTCGTCGACAAAGAGGCCGAGGTCAGCGAGAGCTCCGGTGCCAGCAGCAGCGCGCTGCCGGACTTCTCGTGGCAGGGCATGTCGGCGTCGTCCGACGACGACGCCGCGGCGCAGCAGGCACTCCTCGACGCCGCCGGCGGCGCCAAGAAGCGTCCCCGGAGCGAGCCCCACGTCACCTCCGACGACGAAGTGCTCCCGGCGTCATTCGACAGTGACAACAACACCGCCGCCGCCGGCCTGCTCCCGCTCGACGATCCTTTCTTGTTCGGCGACCAGTTCGGCGACCTCAACGGCGGCGCGTTCGCCTCGCTCATGGACGGGCTGTTCGCCGCCGGTGAAGCGAACGTCGCCGGCGAGAGCGTGGGGCTCTGGAGCTCCGGCGACGACTTTCTCAACGCGTCGTACTATTAGCTAGGGCTTCCATAGTTCTTGTACTTTACTTGTACTGTACTGTATTGTACTGATTGTTAACGTTGCCATAAAGCAATCTTGCTAGTTTGTAAAATAGAAAAAAAAAA] [+] EMBL AK106987 [TCCAAGCGCCCGCCTCTATATATGCGCGCCGCCACCATGTCCAGCTCCGGCAACTAGCTACTGCGAAGTGCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGTGTGGCGGCGCGATTCTGGCTAACATCATGCCGGCCACCCCACGCCCCCGCAAGTGCCGCCCCACCACCGCCACCGCCACCCCCAAGGCGACGACACCGAACGTCGTCGTCGTCGTCAACCTCGTCGACAAAGAGGCCGAGGTCAGCGAGAGCTCCGGTGCCAGCAGCAGCGCGCTGCCGGACTTCTCGTGGCAGGGCATGTCGGCGTCGTCCGACGACGACGCCGCGGCGCAGCAGGCACTCCTCGACGCCGCCGGCGGCGCCAAGAAGCGTCCCCGGAGCGAGCCCCACGTCACCTCCGACGACGAAGTGCTCCCGGCGTCATTCGACAGTGACAACAACACCGCCGCCGCCGGCCTGCTCCCGCTCGACGATCCTTTCTTGTTCGGCGACCAGTTCGGCGACCTCAACGGCGGCGCGTTCGCCTCGCTCATGGACGGGCTGTTCGCCGCCGGTGAAGCGAACGTCGCCGGCGAGAGCGTGGGGCTCTGGAGCTCCGGCGACGACTTTCTCAACGCGTCGTACTATTAGCTAGGGCTTCCATAGTTCTTGTACTTTACTTGTACTGTACTGTATTGTACTGATTGTTAACGTTGCCATAAAGCAATCTT ] [+] EMBL CA755994 [ ACGGCGGCGCGTTCGCCTCGCTCATGGACGGGCTGTTCGCCGCCGGTGAAGCGAACGTCGCCGGCGAGAGCGTGGGGCTCTGGAGCTTCGGCGACGACTTTCTCAACGCGTCGTACTATTAGCTAGGGCTTCCATAGTTCTTGTACTTTACTTGTACTGTACTGTATTGTACTGATTGTTAACGTTGCCATAAAGCAATCTTGCTAGTTTGTAAAATAGAAAAAAAAAA] consensusID : consensus_5990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [GCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGTGTGGCGGCGCGATTCTGGCTAACATCATACCGGCCACGCCGCCGCGGCCCGCCACGGCGGCGCATGTGTGGCCCGGCGGCGACGGGGAGAAGCGGCGGAAGGTTGGTGGAGGCGGGTGTGATGACGACTTCGAGGCGGCGTTTGAGAGATTCGGACGTGAGGACTCTGAGATGGAGGAGGAGGAGGTGGAGGAG] [+] EMBL AU182603 [GCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGTGTGGCGGCGCGATTCTGGCTAACATCATACCGGCCACGCCGCCGCGGCCCGCCACGGCGGCGCATGTGTGGCCCGGCGGCGACGGGGAGAAGCGGCGGAAGGTTGGTGGAGGCGGGTGTGATGACGACTTCGAGGCGGCGTTTGAGAGATTCGGACGTGAGGACTCTGAGATGGAGGAGGAGGAGGTGGAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5990#0 TCCAAGCGCCCGCCTCTATATATGCGCGCCGCCACCATGTCCAGCTCCGGCAACTAGCTA 60 consensus_5990#1 ------------------------------------------------------------ consensus_5990#0 CTGCGAAGTGCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGT 120 consensus_5990#1 ---------GCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGT 51 *************************************************** consensus_5990#0 GTGGCGGCGCGATTCTGGCTAACATCATGCCGGCCACCCCACGCC--CCCGCAAGTGCCG 178 consensus_5990#1 GTGGCGGCGCGATTCTGGCTAACATCATACCGGCCACGCCGCCGCGGCCCGCCACGGCGG 111 **************************** ******** ** * * ***** * ** * consensus_5990#0 CCCCACCACCGCCACCGCCACCCCCAAGGCGACGACACCGAACGTCGTCGTCGTCGTCAA 238 consensus_5990#1 CGCATGTGTGGCC--CGGCGGCGACGGGGAGAAGCGGCGGAAGGTTGGTGGAGGCGGGTG 169 * * *** ** * * * ** ** * * *** ** * * * ** consensus_5990#0 CCTCGTCGACAAAGAGGCCGAGGTCAGCGAGAGCTCCGGTGCCAGCAGCAGCGCGCTGCC 298 consensus_5990#1 TGATGACGACTTCGAGGCGGCGTT---TGAGAGATTCGGACGTGAGGACTCTGAGATGGA 226 * **** ***** * * * ***** * *** * * * ** consensus_5990#0 GGACTTCTCGTGGCAGGGCATGTCGGCGTCGTCCGACGACGACGCCGCGGCGCAGCAGGC 358 consensus_5990#1 GGAGGAGGAGGTGGAGGAG----------------------------------------- 245 *** * * *** consensus_5990#0 ACTCCTCGACGCCGCCGGCGGCGCCAAGAAGCGTCCCCGGAGCGAGCCCCACGTCACCTC 418 consensus_5990#1 ------------------------------------------------------------ consensus_5990#0 CGACGACGAAGTGCTCCCGGCGTCATTCGACAGTGACAACAACACCGCCGCCGCCGGCCT 478 consensus_5990#1 ------------------------------------------------------------ consensus_5990#0 GCTCCCGCTCGACGATCCTTTCTTGTTCGGCGACCAGTTCGGCGACCTCAACGGCGGCGC 538 consensus_5990#1 ------------------------------------------------------------ consensus_5990#0 GTTCGCCTCGCTCATGGACGGGCTGTTCGCCGCCGGTGAAGCGAACGTCGCCGGCGAGAG 598 consensus_5990#1 ------------------------------------------------------------ consensus_5990#0 CGTGGGGCTCTGGAGCTCCGGCGACGACTTTCTCAACGCGTCGTACTATTAGCTAGGGCT 658 consensus_5990#1 ------------------------------------------------------------ consensus_5990#0 TCCATAGTTCTTGTACTTTACTTGTACTGTACTGTATTGTACTGATTGTTAACGTTGCCA 718 consensus_5990#1 ------------------------------------------------------------ consensus_5990#0 TAAAGCAATCTTGCTAGTTTGTAAAATAGAAAAAAAAAA 757 consensus_5990#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||