cluster # 5990

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Oryza sativa
cluster # 5990 cluster # 5990 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5990#0 length = 757 sequences # 2

consensus_5990#1 length = 245 sequences # 1

consensusID : consensus_5990#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 757
fasta sequence

                              [TCCAAGCGCCCGCCTCTATATATGCGCGCCGCCACCATGTCCAGCTCCGGCAACTAGCTACTGCGAAGTGCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGTGTGGCGGCGCGATTCTGGCTAACATCATGCCGGCCACCCCACGCCCCCGCAAGTGCCGCCCCACCACCGCCACCGCCACCCCCAAGGCGACGACACCGAACGTCGTCGTCGTCGTCAACCTCGTCGACAAAGAGGCCGAGGTCAGCGAGAGCTCCGGTGCCAGCAGCAGCGCGCTGCCGGACTTCTCGTGGCAGGGCATGTCGGCGTCGTCCGACGACGACGCCGCGGCGCAGCAGGCACTCCTCGACGCCGCCGGCGGCGCCAAGAAGCGTCCCCGGAGCGAGCCCCACGTCACCTCCGACGACGAAGTGCTCCCGGCGTCATTCGACAGTGACAACAACACCGCCGCCGCCGGCCTGCTCCCGCTCGACGATCCTTTCTTGTTCGGCGACCAGTTCGGCGACCTCAACGGCGGCGCGTTCGCCTCGCTCATGGACGGGCTGTTCGCCGCCGGTGAAGCGAACGTCGCCGGCGAGAGCGTGGGGCTCTGGAGCTCCGGCGACGACTTTCTCAACGCGTCGTACTATTAGCTAGGGCTTCCATAGTTCTTGTACTTTACTTGTACTGTACTGTATTGTACTGATTGTTAACGTTGCCATAAAGCAATCTTGCTAGTTTGTAAAATAGAAAAAAAAAA]

[+] EMBL AK106987             [TCCAAGCGCCCGCCTCTATATATGCGCGCCGCCACCATGTCCAGCTCCGGCAACTAGCTACTGCGAAGTGCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGTGTGGCGGCGCGATTCTGGCTAACATCATGCCGGCCACCCCACGCCCCCGCAAGTGCCGCCCCACCACCGCCACCGCCACCCCCAAGGCGACGACACCGAACGTCGTCGTCGTCGTCAACCTCGTCGACAAAGAGGCCGAGGTCAGCGAGAGCTCCGGTGCCAGCAGCAGCGCGCTGCCGGACTTCTCGTGGCAGGGCATGTCGGCGTCGTCCGACGACGACGCCGCGGCGCAGCAGGCACTCCTCGACGCCGCCGGCGGCGCCAAGAAGCGTCCCCGGAGCGAGCCCCACGTCACCTCCGACGACGAAGTGCTCCCGGCGTCATTCGACAGTGACAACAACACCGCCGCCGCCGGCCTGCTCCCGCTCGACGATCCTTTCTTGTTCGGCGACCAGTTCGGCGACCTCAACGGCGGCGCGTTCGCCTCGCTCATGGACGGGCTGTTCGCCGCCGGTGAAGCGAACGTCGCCGGCGAGAGCGTGGGGCTCTGGAGCTCCGGCGACGACTTTCTCAACGCGTCGTACTATTAGCTAGGGCTTCCATAGTTCTTGTACTTTACTTGTACTGTACTGTATTGTACTGATTGTTAACGTTGCCATAAAGCAATCTT                           ]
[+] EMBL CA755994             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACGGCGGCGCGTTCGCCTCGCTCATGGACGGGCTGTTCGCCGCCGGTGAAGCGAACGTCGCCGGCGAGAGCGTGGGGCTCTGGAGCTTCGGCGACGACTTTCTCAACGCGTCGTACTATTAGCTAGGGCTTCCATAGTTCTTGTACTTTACTTGTACTGTACTGTATTGTACTGATTGTTAACGTTGCCATAAAGCAATCTTGCTAGTTTGTAAAATAGAAAAAAAAAA]




>consensus_5990#0
TCCAAGCGCCCGCCTCTATATATGCGCGCCGCCACCATGTCCAGCTCCGGCAACTAGCTA
CTGCGAAGTGCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGT
GTGGCGGCGCGATTCTGGCTAACATCATGCCGGCCACCCCACGCCCCCGCAAGTGCCGCC
CCACCACCGCCACCGCCACCCCCAAGGCGACGACACCGAACGTCGTCGTCGTCGTCAACC
TCGTCGACAAAGAGGCCGAGGTCAGCGAGAGCTCCGGTGCCAGCAGCAGCGCGCTGCCGG
ACTTCTCGTGGCAGGGCATGTCGGCGTCGTCCGACGACGACGCCGCGGCGCAGCAGGCAC
TCCTCGACGCCGCCGGCGGCGCCAAGAAGCGTCCCCGGAGCGAGCCCCACGTCACCTCCG
ACGACGAAGTGCTCCCGGCGTCATTCGACAGTGACAACAACACCGCCGCCGCCGGCCTGC
TCCCGCTCGACGATCCTTTCTTGTTCGGCGACCAGTTCGGCGACCTCAACGGCGGCGCGT
TCGCCTCGCTCATGGACGGGCTGTTCGCCGCCGGTGAAGCGAACGTCGCCGGCGAGAGCG
TGGGGCTCTGGAGCTCCGGCGACGACTTTCTCAACGCGTCGTACTATTAGCTAGGGCTTC
CATAGTTCTTGTACTTTACTTGTACTGTACTGTATTGTACTGATTGTTAACGTTGCCATA
AAGCAATCTTGCTAGTTTGTAAAATAGAAAAAAAAAA

consensusID : consensus_5990#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [GCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGTGTGGCGGCGCGATTCTGGCTAACATCATACCGGCCACGCCGCCGCGGCCCGCCACGGCGGCGCATGTGTGGCCCGGCGGCGACGGGGAGAAGCGGCGGAAGGTTGGTGGAGGCGGGTGTGATGACGACTTCGAGGCGGCGTTTGAGAGATTCGGACGTGAGGACTCTGAGATGGAGGAGGAGGAGGTGGAGGAG]

[+] EMBL AU182603             [GCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGTGTGGCGGCGCGATTCTGGCTAACATCATACCGGCCACGCCGCCGCGGCCCGCCACGGCGGCGCATGTGTGGCCCGGCGGCGACGGGGAGAAGCGGCGGAAGGTTGGTGGAGGCGGGTGTGATGACGACTTCGAGGCGGCGTTTGAGAGATTCGGACGTGAGGACTCTGAGATGGAGGAGGAGGAGGTGGAGGAG]




>consensus_5990#1
GCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGTGTGGCGGCG
CGATTCTGGCTAACATCATACCGGCCACGCCGCCGCGGCCCGCCACGGCGGCGCATGTGT
GGCCCGGCGGCGACGGGGAGAAGCGGCGGAAGGTTGGTGGAGGCGGGTGTGATGACGACT
TCGAGGCGGCGTTTGAGAGATTCGGACGTGAGGACTCTGAGATGGAGGAGGAGGAGGTGG
AGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5990#0      TCCAAGCGCCCGCCTCTATATATGCGCGCCGCCACCATGTCCAGCTCCGGCAACTAGCTA 60
consensus_5990#1      ------------------------------------------------------------
                                                                                  

consensus_5990#0      CTGCGAAGTGCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGT 120
consensus_5990#1      ---------GCGAACTGATCAGATCGTCGAGAGGAAACCCAAGATCCAACGACGACATGT 51
                               ***************************************************

consensus_5990#0      GTGGCGGCGCGATTCTGGCTAACATCATGCCGGCCACCCCACGCC--CCCGCAAGTGCCG 178
consensus_5990#1      GTGGCGGCGCGATTCTGGCTAACATCATACCGGCCACGCCGCCGCGGCCCGCCACGGCGG 111
                      **************************** ******** ** *  *  ***** *  ** *

consensus_5990#0      CCCCACCACCGCCACCGCCACCCCCAAGGCGACGACACCGAACGTCGTCGTCGTCGTCAA 238
consensus_5990#1      CGCATGTGTGGCC--CGGCGGCGACGGGGAGAAGCGGCGGAAGGTTGGTGGAGGCGGGTG 169
                      * *       ***  ** *  *  *  ** ** *   * *** ** *  *  * **    

consensus_5990#0      CCTCGTCGACAAAGAGGCCGAGGTCAGCGAGAGCTCCGGTGCCAGCAGCAGCGCGCTGCC 298
consensus_5990#1      TGATGACGACTTCGAGGCGGCGTT---TGAGAGATTCGGACGTGAGGACTCTGAGATGGA 226
                          * ****   ***** * * *    ***** * ***         *   * * **  

consensus_5990#0      GGACTTCTCGTGGCAGGGCATGTCGGCGTCGTCCGACGACGACGCCGCGGCGCAGCAGGC 358
consensus_5990#1      GGAGGAGGAGGTGGAGGAG----------------------------------------- 245
                      ***      *  * ***                                           

consensus_5990#0      ACTCCTCGACGCCGCCGGCGGCGCCAAGAAGCGTCCCCGGAGCGAGCCCCACGTCACCTC 418
consensus_5990#1      ------------------------------------------------------------
                                                                                  

consensus_5990#0      CGACGACGAAGTGCTCCCGGCGTCATTCGACAGTGACAACAACACCGCCGCCGCCGGCCT 478
consensus_5990#1      ------------------------------------------------------------
                                                                                  

consensus_5990#0      GCTCCCGCTCGACGATCCTTTCTTGTTCGGCGACCAGTTCGGCGACCTCAACGGCGGCGC 538
consensus_5990#1      ------------------------------------------------------------
                                                                                  

consensus_5990#0      GTTCGCCTCGCTCATGGACGGGCTGTTCGCCGCCGGTGAAGCGAACGTCGCCGGCGAGAG 598
consensus_5990#1      ------------------------------------------------------------
                                                                                  

consensus_5990#0      CGTGGGGCTCTGGAGCTCCGGCGACGACTTTCTCAACGCGTCGTACTATTAGCTAGGGCT 658
consensus_5990#1      ------------------------------------------------------------
                                                                                  

consensus_5990#0      TCCATAGTTCTTGTACTTTACTTGTACTGTACTGTATTGTACTGATTGTTAACGTTGCCA 718
consensus_5990#1      ------------------------------------------------------------
                                                                                  

consensus_5990#0      TAAAGCAATCTTGCTAGTTTGTAAAATAGAAAAAAAAAA 757
consensus_5990#1      ---------------------------------------