These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 986 fasta sequence [CCTCCCCCTCCCCTGTTCATTATCTTCTCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCGGCGCAGAGCTACGAGGGCGGTGGCGGCGCGGAGCTGCGAAATCGACGACTACGGCGGCAGCGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGTGGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCGAAATCGACAGCTACGGCGGCAGCGTAGAGCTGCGAGGGCGGCTGCGGTTGCGTGGAGCTGCGAGGGCGGCGGCTGCGGTGGCGGCGTGGAGCCGCGAGGGCGGTGGCGGCGGGGAGTTGGTGCGAGGGCGGCGACGCTGCGAATCACGAGCTTGTTGCCTCGCTCAGAAGTGGCCGACCTCGCCGGAGCCATACGCGCGGGGAGGAGTCATCCCTATGCGCTCGCGCCGCCACCGCTTGGTCGAGGACGAGGTCGAGCTCAAGCTCTACATCCGCCGCCGCCTCGTCGAGCTTGAGTTCCTCATCCCCAAGCAGCTCGAGTTCCACCGGCGAGCTCGAACATGGAGAAGATGGAGTTATGGAGCTCCTGGAGCCGGCAGAAGAGGTAGACCTTTGAGCTCGTGCTCGCCGGCGGTCGGCACGGAAGGGAAGGCTGGGGATGTGCTTGAGCTCCGTCGCCGCAACGAGTCCCCTGCTCCACGGCCACCGATCTCCTGCTCAGCTCCACCGCTGCTCTCTGTCTGGGAGGAAGAAGGATAGAGAAAGAAAGGGAAGAGGAGATGGGGGAAGAAGTGGCCACTAACGTGTGGCTCTAATTTTTATTTTTAGTTTTATTTGCTGAGTAGACTTCCACATCATTGCCACATAGATGAAAACCAGCTGAAAAACCACTTGAGGGTGTAAAGTGAACGGTATTGAAAGTTGGAGGGGGTGAAATATCTGGTTTTAAAGTTTTGGGTGTATTTTAGA] [+] EMBL AK109581 [CCTCCCCCTCCCCTGTTCATTATCTTCTCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCGGCGCAGAGCTACGAGGGCGGTGGCGGCGCGGAGCTGCGAAATCGACGACTACGGCGGCAGCGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGTGGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCGAAATCGACAGCTACGGCGGCAGCGTAGAGCTGCGAGGGCGGCTGCGGTTGCGTGGAGCTGCGAGGGCGGCGGCTGCGGTGGCGGCGTGGAGCCGCGAGGGCGGTGGCGGCGGGGAGTTGGTGCGAGGGCGGCGACGCTGCGAATCACGAGCTTGTTGCCTCGCTCAGAAGTGGCCGACCTCGCCGGAGCCATACGCGCGGGGAGGAGTCATCCCTATGCGCTCGCGCCGCCACCGCTTGGTCGAGGACGAGGTCGAGCTCAAGCTCTACATCCGCCGCCGCCTCGTCGAGCTTGAGTTCCTCATCCCCAAGCAGCTCGAGTTCCACCGGCGAGCTCGAACATGGAGAAGATGGAGTTATGGAGCTCCTGGAGCCGGCAGAAGAGGTAGACCTTTGAGCTCGTGCTCGCCGGCGGTCGGCACGGAAGGGAAGGCTGGGGATGTGCTTGAGCTCCGTCGCCGCAACGAGTCCCCTGCTCCACGGCCACCGATCTCCTGCTCAGCTCCACCGCTGCTCTCTGTCTGGGAGGAAGAAGGATAGAGAAAGAAAGGGAAGAGGAGATGGGGGAAGAAGTGGCCACTAACGTGTGGCTCTAATTTTTATTTTTAGTTTTATTTGCTGAGTAGACTTCCACATCATTGCCACATAGATGAAAACCAGCTGAAAAACCACTTGAGGGTGTAAAGTGAACGGTATTGAAAGTTGGAGGGGGTGAAATATCTGGTTTTAAAGTTTTGGGTGTATTTTAGA] [-] EMBL CB663615 [ agaCTTGAGTTCCTCATCCCCAAGCAGCTCGAGTTCCACCGGCGAGCTCGAACATGGAGAAGATGGAGTTATGGAGCTCCTGGAGCCGGCAGAAGAGGTAGACCTTTGAGCTCGTGCTCGCCGGCGGTCGGCACGGAAGGGAAGGCTGGGGATGTGCTTGAGCTCCGTCGCCGCAACGAGTCCCCTGCTCCACGGCCACCGATCTCCTGCTCAGCTCCACCGCTGCTCTCTGTCTGGGAGGAAGAAGGATAGAGAAAGAAAGGGAAGAGGAGATGGGGGAAGAAGTGGCCACTAACGTGTGGCTCTAATTTTTATTTTTAGTTTTATTTGCTGAGTAGACTTCCACATCATTGCCACATAGATGAAAACCAGCTGAAAAACCACTTGAGGGTGTAAAGTGAACGGTATTGAAAGTTGGAGGGGGTGAAATA ] consensusID : consensus_5997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [TCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCGGCGCACAGCTACGAGGGCGGTGGCGGCGCGGAACTGCGAAATCGACGACTACGGCGGCAGCGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGTGGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCAAAATCGACAGCTACGGCGGCAGCATACAGCTGCGAGGGCGGCTGCGGTTGCATGGAGCTGCTACGGCGGCGGCTGCAGCGGCGGCGAGCACCCGCTAGGGCGGCTACCTCTTCTACCGGCTCCAAGAGCTCCATAACTCCATCTTCTCCATGTTCTAGCTCGCCGGTGGAACTCCAACTGCTTGGGGATGATGAAC] [+] EMBL CB663614 [TCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCGGCGCACAGCTACGAGGGCGGTGGCGGCGCGGAACTGCGAAATCGACGACTACGGCGGCAGCGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGTGGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCAAAATCGACAGCTACGGCGGCAGCATACAGCTGCGAGGGCGGCTGCGGTTGCATGGAGCTGCTACGGCGGCGGCTGCAGCGGCGGCGAGCACCCGCTAGGGCGGCTACCTCTTCTACCGGCTCCAAGAGCTCCATAACTCCATCTTCTCCATGTTCTAGCTCGCCGGTGGAACTCCAACTGCTTGGGGATGATGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5997#0 CCTCCCCCTCCCCTGTTCATTATCTTCTCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCG 60 consensus_5997#1 ---------------------------TCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCG 33 ********************************* consensus_5997#0 GCGCAGAGCTACGAGGGCGGTGGCGGCGCGGAGCTGCGAAATCGACGACTACGGCGGCAG 120 consensus_5997#1 GCGCACAGCTACGAGGGCGGTGGCGGCGCGGAACTGCGAAATCGACGACTACGGCGGCAG 93 ***** ************************** *************************** consensus_5997#0 CGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGT 180 consensus_5997#1 CGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGT 153 ************************************************************ consensus_5997#0 GGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCGAAA 240 consensus_5997#1 GGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCAAAA 213 ******************************************************** *** consensus_5997#0 TCGACAGCTACGGCGGCAGCGTAGAGCTGCGAGGGCGGCTGCGGTTGCGTGGAGCTGCGA 300 consensus_5997#1 TCGACAGCTACGGCGGCAGCATACAGCTGCGAGGGCGGCTGCGGTTGCATGGAGCTGCTA 273 ******************** ** ************************ ********* * consensus_5997#0 GGGCGGCGGCTGCGGTGGCGGCGTGGAGCCGCGAGGGCGGTGGCGGCGGGGAGTTGGTGC 360 consensus_5997#1 CGGCGGCGGCTGCAGCGGCGGCGAGCACCCGCTAGGGCGGCTACCTCTTCTACCGGCTCC 333 ************ * ******* * * **** ******* * * * * * * consensus_5997#0 GAGGGCGGCGACGCTGCGAATCACGAGCTTGTTGCCTCGCTCAGAAGTGGCCGACCTCGC 420 consensus_5997#1 AAGAGCTCCATAACTCCATCTTCTCCATGTTCTAGCTCGCCGGTGGAACTCCAACTGCTT 393 ** ** * ** * * * * ***** ** ** * consensus_5997#0 CGGAGCCATACGCGCGGGGAGGAGTCATCCCTATGCGCTCGCGCCGCCACCGCTTGGTCG 480 consensus_5997#1 GGGGATGATGAAC----------------------------------------------- 406 ** ** * consensus_5997#0 AGGACGAGGTCGAGCTCAAGCTCTACATCCGCCGCCGCCTCGTCGAGCTTGAGTTCCTCA 540 consensus_5997#1 ------------------------------------------------------------ consensus_5997#0 TCCCCAAGCAGCTCGAGTTCCACCGGCGAGCTCGAACATGGAGAAGATGGAGTTATGGAG 600 consensus_5997#1 ------------------------------------------------------------ consensus_5997#0 CTCCTGGAGCCGGCAGAAGAGGTAGACCTTTGAGCTCGTGCTCGCCGGCGGTCGGCACGG 660 consensus_5997#1 ------------------------------------------------------------ consensus_5997#0 AAGGGAAGGCTGGGGATGTGCTTGAGCTCCGTCGCCGCAACGAGTCCCCTGCTCCACGGC 720 consensus_5997#1 ------------------------------------------------------------ consensus_5997#0 CACCGATCTCCTGCTCAGCTCCACCGCTGCTCTCTGTCTGGGAGGAAGAAGGATAGAGAA 780 consensus_5997#1 ------------------------------------------------------------ consensus_5997#0 AGAAAGGGAAGAGGAGATGGGGGAAGAAGTGGCCACTAACGTGTGGCTCTAATTTTTATT 840 consensus_5997#1 ------------------------------------------------------------ consensus_5997#0 TTTAGTTTTATTTGCTGAGTAGACTTCCACATCATTGCCACATAGATGAAAACCAGCTGA 900 consensus_5997#1 ------------------------------------------------------------ consensus_5997#0 AAAACCACTTGAGGGTGTAAAGTGAACGGTATTGAAAGTTGGAGGGGGTGAAATATCTGG 960 consensus_5997#1 ------------------------------------------------------------ consensus_5997#0 TTTTAAAGTTTTGGGTGTATTTTAGA 986 consensus_5997#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||