cluster # 5998

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Oryza sativa
cluster # 5998 cluster # 5998 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5998#0 length = 1687 sequences # 3
consensusID : consensus_5998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1687
fasta sequence
                              [GCCACACTCGCTGTGTTTCTCCTCTGCCGCTTAACCACCTCCCTCCGTAACAAACTCCTCATTTCGCTCCCCTCCCTTGCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCGCGACCACCACCGATCCATCCATCCACCGTGTCTTCTCTTCCCTCTCCAATGGGGAACCCTCCCGAGCTGTACCACCGCATCCTCAACATCCCCAGGGAGACCTCGCCGCAGGAAATCCGCGCCGCCTACAAGAGCCTCGTCAAGAAATGGCACCCCGACAAGCACCCGCCGTCCTCCAAGCCCGAGGCCGAGGCCCGCTTCAAGGCCATCACCGAGGCCTACGAGGCGCTCCTTGACCAGCAGGAGAACAGGGCGGTGTTCGGGGTGTGCTGCAACGACGGCCGCGCGGGCGAGAAGGCCATGGCGTGCGGCGTGGTCGGCGGCGGAGGGGCACACATCGCGAGGACGCGCAGCGACGACTTCGGCGCGAGGATGGCGCCCGGCACGCCGGCGAGGGAGTTCAAGAAGGTGTACAGCTCCGGCAACTCCGGCGGGCGGCGCGCGTTCGCCGAGTTCTCCAGCTCAATCATGCGCAAGGCGCCGCCGCTGGAGCGCAAGCTCGACTGCACCCTCGAGGAGCTCTGCCACGGCTGCAAGAAGGAGGTCAAGTTCACCCGCGACGTCGTCACCAAGAACGGGTCAATAGTCAAGAAGGAGGTGAGCCAGATGGTGCTGGTGAAACCAGGGTGGAAGAAAGGGAACAAGATCACATTTGAAGGCATGGGGGATGAGAGGCCAGGGTGCCTACCGGCCGATGCCGTCTTCGTCATATCGGAGAAGAAACACCCTGTCTTCAAGAGGGTAGGCAACGACCTGGTGCTGAAAGCCGAGGTGCCATTGGTGAGCGCGCTCACCGGCTGGTCCTTCTCATTCAGGCTCCTGAGTGGCAAGAAGGTGAGCTGCTCATTTCAGGATGAGATCATCTGCCCAGGATATGAGAAGATCATCAAAGGGGAAGGGATGCCAATTGCCGATCAGAAAGGAGCACGGGGTGATCTAAGGGTGAAGTTTGAGATCGCGTTCCCGAAGCAGCTTACTGACGAGCAACGCGACGGTCTTGCTCAAATTCTGAGAGGATGTGCATGGGATTGATGAGATTGAAATGCAAGGTCCAAGTGTATCAAATTTTCTCAGCCTTGTGTTAAACAATCAGAATGAGTACATAAAGAGAGATGCCCTTGTATATACAGGTATAATATATGATGAAAACCAAGTCTTCTGTGGATAGTACATGCCTTTCCAGATGAGCTGTATGGGTTTATTTTGATGAGATCTCGCCCTCTTCTTTTNGTCCATATATAATGGCCCATTTAATTAATTACTAACCCCACTTCATTTATTTAAGTATCTAAAAGTGAAGCTTCATACTATCATTCTACTACCGTACCCAATGCCACTCCCACCTGCTATGTCCACCTGTTCTCCAGGCTCATTGTCTTTTGCGAAAAGCACTAACAATCATTCGCCTAATTGNCGATTGTTCTCGTCAGTTACAACGGACGTGCTGGTAACAGCTTTGCCTAATCCCTTCCTTGGCTGATGAACTGCAGCTTTACTTTGTGCTTTTCCCCCCTGCTTTTGCTGCACTAGTTGACAGGCTGCAGTTGCTGAAACCCCAAGGGATTCAAGGGTC]

[+] EMBL AK063817             [GCCACACTCGCTGTGTTTCTCCTCTGCCGCTTAACCACCTCCCTCCGTAACAAACTCCTCATTTCGCTCCCCTCCCTTGCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCGCGACCACCACCGATCCATCCATCCACCGTGTCTTCTCTTCCCTCTCCAATGGGGAACCCTCCCGAGCTGTACCACCGCATCCTCAACATCCCCAGGGAGACCTCGCCGCAGGAAATCCGCGCCGCCTACAAGAGCCTCGTCAAGAAATGGCACCCCGACAAGCACCCGCCGTCCTCCAAGCCCGAGGCCGAGGCCCGCTTCAAGGCCATCACCGAGGCCTACGAGGCGCTCCTTGACCAGCAGGAGAACAGGGCGGTGTTCGGGGTGTGCTGCAACGACGGCCGCGCGGGCGAGAAGGCCATGGCGTGCGGCGTGGTCGGCGGCGGAGGGGCACACATCGCGAGGACGCGCAGCGACGACTTCGGCGCGAGGATGGCGCCCGGCACGCCGGCGAGGGAGTTCAAGAAGGTGTACAGCTCCGGCAACTCCGGCGGGCGGCGCGCGTTCGCCGAGTTCTCCAGCTCAATCATGCGCAAGGCGCCGCCGCTGGAGCGCAAGCTCGACTGCACCCTCGAGGAGCTCTGCCACGGCTGCAAGAAGGAGGTCAAGTTCACCCGCGACGTCGTCACCAAGAACGGGTCAATAGTCAAGAAGGAGGTGAGCCAGATGGTGCTGGTGAAACCAGGGTGGAAGAAAGGGAACAAGATCACATTTGAAGGCATGGGGGATGAGAGGCCAGGGTGCCTACCGGCCGATGCCGTCTTCGTCATATCGGAGAAGAAACACCCTGTCTTCAAGAGGGTAGGCAACGACCTGGTGCTGAAAGCCGAGGTGCCATTGGTGAGCGCGCTCACCGGCTGGTCCTTCTCATTCAGGCTCCTGAGTGGCAAGAAGGTGAGCTGCTCATTTCAGGATGAGATCATCTGCCCAGGATATGAGAAGATCATCAAAGGGGAAGGGATGCCAATTGCCGATCAGAAAGGAGCACGGGGTGATCTAAGGGTGAAGTTTGAGATCGCGTTCCCGAAGCAGCTTACTGACGAGCAACGCGACGGTCTTGCTCAAATTCTGAGAGGATGTGCATGGGATTGATGAGATTGAAATGCAAGGTCCAAGTGTATCAAATTTTCTCAGCCTTGTGTTAAACAATCAGAATGAGTACATAAAGAGAGATGCCCTTGTATATACAGGTATAATATATGATGAAAACCAAGTCTTCTGTGGATAGTACATGCCTTTCCAGATGAGCTGTATGG                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB657217             [                                                                                            TCTTCTTCTTCTTCCTCCTCCGCGACCACCACCGATCCATCCATCCACCGTGTCTTCTCTTCCCTCTCCAATGGGGAACCCTCCCGAGCTGTACCACCGCATCCTCAACATCCCCAGGGAGACCTCGCCGCAGGAAATCCGCGCCGCCTACAAGAGCCTCGTCAAGAAATGGCACCCCGACAAGCACCCGCCGTCCTCCAAGCCCGAGGCCGAGGCCCGCTTCAAGGCCATCACCGAGGCCTACGAGGCGCTCCTTGACCAGCAGGAGAACAGGGCGGTGTTCGGGGTGTGCTGCAACGACGGCCGCGCGGGCGAGAAGGCCATGGCGTGCGGCGTGGTCGGCGGCGGAGGGGCACACATCGCGAGGACGCGCAGCGACGACTTCGGCGCGAGGATGGCGCCCGGCACGCCGGCGAGGGAGTTCAAGAAGGTGTACAGCTCCGGCAACTCCGGCGGGCGGCGCGCGTTCGCCGAGTTCTCCAGCTCAATCATGCGCAAGGCGCCGCCGCTGGAGCGCAAGCTCGACTGCACCCTCGAGGAGCTCTGCCACGGCTGCAAGAAGGAGGTCAAGTTCACCCGCGACGTCGTCACCAAGAACGGGTCAATAGTCAAGAAGGAGGTGAGCCAGATGGTGCTGGTGAAACCAGGGTGGAAGAAAGGGAACAAGATCACATTTGAAGGCATGGGGGATGAGAGGCCAGGGTGCCTACCGGCCGATGCCGTCTTCGTCATATCGGAGAAGAAACACCCTGTCTTCAAGAGGGTAGGCAACGACCTGGTGCTGAAAGCCGAGGTGCCATTGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL AU096118             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ttttTATCAAATTTTCTCAGCCTTGTGTTAAACAATCAGAATGAGTACATAAAGAGAGATGCCCTTGTATATACAGGTATAATATATGATGAAAACCAAGTCTTCTGTGGATAGTACATGCCTTTCCAGATGAGCTGTATGGGTTTATTTTGATGAGATCTCGCCCTCTTCTTTTNGTCCATATATAATGGCCCATTTAATTAATTACTAACCCCACTTCATTTATTTAAGTATCTAAAAGTGAAGCTTCATACTATCATTCTACTACCGTACCCAATGCCACTCCCACCTGCTATGTCCACCTGTTCTCCAGGCTCATTGTCTTTTGCGAAAAGCACTAACAATCATTCGCCTAATTGNCGATTGTTCTCGTCAGTTACAACGGACGTGCTGGTAACAGCTTTGCCTAATCCCTTCCTTGGCTGATGAACTGCAGCTTTACTTTGTGCTTTTCCCCCCTGCTTTTGCTGCACTAGTTGACAGGCTGCAGTTGCTGAAACCCCAAGGGATTCAAGGGTC]




>consensus_5998#0
GCCACACTCGCTGTGTTTCTCCTCTGCCGCTTAACCACCTCCCTCCGTAACAAACTCCTC
ATTTCGCTCCCCTCCCTTGCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCGCGACCA
CCACCGATCCATCCATCCACCGTGTCTTCTCTTCCCTCTCCAATGGGGAACCCTCCCGAG
CTGTACCACCGCATCCTCAACATCCCCAGGGAGACCTCGCCGCAGGAAATCCGCGCCGCC
TACAAGAGCCTCGTCAAGAAATGGCACCCCGACAAGCACCCGCCGTCCTCCAAGCCCGAG
GCCGAGGCCCGCTTCAAGGCCATCACCGAGGCCTACGAGGCGCTCCTTGACCAGCAGGAG
AACAGGGCGGTGTTCGGGGTGTGCTGCAACGACGGCCGCGCGGGCGAGAAGGCCATGGCG
TGCGGCGTGGTCGGCGGCGGAGGGGCACACATCGCGAGGACGCGCAGCGACGACTTCGGC
GCGAGGATGGCGCCCGGCACGCCGGCGAGGGAGTTCAAGAAGGTGTACAGCTCCGGCAAC
TCCGGCGGGCGGCGCGCGTTCGCCGAGTTCTCCAGCTCAATCATGCGCAAGGCGCCGCCG
CTGGAGCGCAAGCTCGACTGCACCCTCGAGGAGCTCTGCCACGGCTGCAAGAAGGAGGTC
AAGTTCACCCGCGACGTCGTCACCAAGAACGGGTCAATAGTCAAGAAGGAGGTGAGCCAG
ATGGTGCTGGTGAAACCAGGGTGGAAGAAAGGGAACAAGATCACATTTGAAGGCATGGGG
GATGAGAGGCCAGGGTGCCTACCGGCCGATGCCGTCTTCGTCATATCGGAGAAGAAACAC
CCTGTCTTCAAGAGGGTAGGCAACGACCTGGTGCTGAAAGCCGAGGTGCCATTGGTGAGC
GCGCTCACCGGCTGGTCCTTCTCATTCAGGCTCCTGAGTGGCAAGAAGGTGAGCTGCTCA
TTTCAGGATGAGATCATCTGCCCAGGATATGAGAAGATCATCAAAGGGGAAGGGATGCCA
ATTGCCGATCAGAAAGGAGCACGGGGTGATCTAAGGGTGAAGTTTGAGATCGCGTTCCCG
AAGCAGCTTACTGACGAGCAACGCGACGGTCTTGCTCAAATTCTGAGAGGATGTGCATGG
GATTGATGAGATTGAAATGCAAGGTCCAAGTGTATCAAATTTTCTCAGCCTTGTGTTAAA
CAATCAGAATGAGTACATAAAGAGAGATGCCCTTGTATATACAGGTATAATATATGATGA
AAACCAAGTCTTCTGTGGATAGTACATGCCTTTCCAGATGAGCTGTATGGGTTTATTTTG
ATGAGATCTCGCCCTCTTCTTTTNGTCCATATATAATGGCCCATTTAATTAATTACTAAC
CCCACTTCATTTATTTAAGTATCTAAAAGTGAAGCTTCATACTATCATTCTACTACCGTA
CCCAATGCCACTCCCACCTGCTATGTCCACCTGTTCTCCAGGCTCATTGTCTTTTGCGAA
AAGCACTAACAATCATTCGCCTAATTGNCGATTGTTCTCGTCAGTTACAACGGACGTGCT
GGTAACAGCTTTGCCTAATCCCTTCCTTGGCTGATGAACTGCAGCTTTACTTTGTGCTTT
TCCCCCCTGCTTTTGCTGCACTAGTTGACAGGCTGCAGTTGCTGAAACCCCAAGGGATTC
AAGGGTC
clustalw multiple alignements is not computed in this case