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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[TTTTTTTTTTTTTGACCAGAAATGAACACTCATTAAACAGGGACTCATTTGATCACTTTTATCTACCTATCAAGCCATGACAAATAATAAGGAGCTTAGGATGGATCAATGCAAATGTTCCCTCTCCTCACAAGACAACAGATTATGATGACCTACATATTCTTCACATCAAACCTAGCTTCAGCAGCTGCTATAACTACAACAAGCTCCATCAGTTCAGGACTGCTTCTCCTTGGACCCACCACGTCTGCAGCGGTGGAACCAGCTCGCACTCGGTGCCCCTTGACTTGAACTCTAGGGACGATCTGCATCTCCCTGGCCAGCCTTTCTACTTGAAGTCTGAACTGCAGGAGGAGGAGGCTTCCGGAACCTCTCTGAGGCACCCCCTCGGAGATGAAAATAAGGGCCCTTGCATTGCAGGCCCATATATAACATTTGCGAACACGGAAAGAAAAGCCATTGGTAACATTTCACTAGGCTTTGAAACACCTGCACCAAGCAAGTTTCTGACTTTAAAACACTCCATGAACGGACCGTCCCGCGGTTTCCATTAGGCTTGACCCTTCTTCTGGCATTAGAGTTATTTGACAGGACTTTCGCTTGAAGCGAGTTTTACTTCAAACAGTGACGACAATATGCTCGCTTGATTGTAATTTGGGCGAGGAGCTT]
[+] EMBL CA761537 [TTTTTTTTTTTTTGACCAGAAATGAACACTCATTAAACAGGGACTCATTTGATCACTTTTATCTACCTATCAAGCCATGACAAATAATAAGGAGCTTAGGATGGATCAATGCAAATGTTCCCTCTCCTCACAAGACAACAGATTATGATGACCTACATATTCTTCACATCAAACCTAGCTTCAGCAGCTGCTATAACTACAACAAGCTCCATCAGTTCAGGACTGCTTCTCCTTGGACCCACCACGTCTGCAGCGGTGGAACCAGCTCGCACTCGGTGCCCCTTGACTTGAACTCTAGGGACGATCTGCATCTCCCTGGCCAGCCTTTCTACTTGAAGTCTGAACTGCAGGAGGAGGAGGCTTCCGGAACCTCTCTGAGGCACCCCCTCGGAGATGAAAATAAGGGCCCTTGCATTGCAGGCCCATATATAACATTTGCGAACACGGAAAGAAAAGCCATTGGTAACATTTCACTAGGCTTTGAAACACCTGCACCAAGCAAGTTTCTGACTTTAAAACACTCCATGAACGGACCGTCCCGCGGTTTCCATTAGGCTTGACCCTTCTTCTGGCATTAGAGTTATTTGACAGGACTTTCGCTTGAAGCGAGTTTTACTTCAAACAGTGACGACAATATGCTCGCTTGATTGTAATTTGGGCGAGGAGCTT]
consensusID : consensus_6#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[TTTTTTTTTTTTTGACCAGAAATGAAAACCCATCAAACAGGTACTCATTTGAACACTTTCTATCTACCTATCAAGCCATGACAAAAAAGAAGGAGCTTAGGATGGAGCACTGCAAACGTTCCCTCTCCTCACAAGACAGCAGAGTATGATGACCTACGTATTCTTCATATCAAACCTAGCTTCAGAAGCGTGATATAACTACAACAGGCTCCCTCAGCTCAGGACTGGTTCTCCTTGGACCCACCACGTCTGCAGCGGTGGAACCAGATCGCACTCGATGCCCCTTGACTTGAACTCTAGGAACGATCTGCATCTCCCTGGCCAGCCCTTCTACTTGAAGCCTGATCTGCAGGAGGAGGAGGCTTAGGGGGAACTATCTGGGGAACCCCTGGGGAAGATAAGTTAAGGGGCCTCCCGGGGCTAGCCCGTTTAACAAATTGGGTACAGAGAGAAGAAACGCGATGGGTAAGACGGGAGAAAAGGTGCGGAGGGCTGGTAGCTGGACGTTTCGGACGTTTTAGAGGCCCTATAAGCGGACGGTCCGCGCGGGTTCCACGAGGCGTTGGCATTATCTCGGCTTTGGTGCGGGTGCGCCGGGACTTCTCTTTGGCGCGGGTGAGATTGGACCAGGCGCCATAATT]
[+] EMBL CA761538 [TTTTTTTTTTTTTGACCAGAAATGAAAACCCATCAAACAGGTACTCATTTGAACACTTTCTATCTACCTATCAAGCCATGACAAAAAAGAAGGAGCTTAGGATGGAGCACTGCAAACGTTCCCTCTCCTCACAAGACAGCAGAGTATGATGACCTACGTATTCTTCATATCAAACCTAGCTTCAGAAGCGTGATATAACTACAACAGGCTCCCTCAGCTCAGGACTGGTTCTCCTTGGACCCACCACGTCTGCAGCGGTGGAACCAGATCGCACTCGATGCCCCTTGACTTGAACTCTAGGAACGATCTGCATCTCCCTGGCCAGCCCTTCTACTTGAAGCCTGATCTGCAGGAGGAGGAGGCTTAGGGGGAACTATCTGGGGAACCCCTGGGGAAGATAAGTTAAGGGGCCTCCCGGGGCTAGCCCGTTTAACAAATTGGGTACAGAGAGAAGAAACGCGATGGGTAAGACGGGAGAAAAGGTGCGGAGGGCTGGTAGCTGGACGTTTCGGACGTTTTAGAGGCCCTATAAGCGGACGGTCCGCGCGGGTTCCACGAGGCGTTGGCATTATCTCGGCTTTGGTGCGGGTGCGCCGGGACTTCTCTTTGGCGCGGGTGAGATTGGACCAGGCGCCATAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6#0 TTTTTTTTTTTTTGACCAGAAATGAACACTCATTAAACAGGGACTCATTTGATCACTTT- 59
consensus_6#1 TTTTTTTTTTTTTGACCAGAAATGAAAACCCATCAAACAGGTACTCATTTGAACACTTTC 60
************************** ** *** ******* ********** ******
consensus_6#0 TATCTACCTATCAAGCCATGACAAATAATAAGGAGCTTAGGATGGATCAATGCAAATGTT 119
consensus_6#1 TATCTACCTATCAAGCCATGACAAAAAAGAAGGAGCTTAGGATGGAGCACTGCAAACGTT 120
************************* ** ***************** ** ****** ***
consensus_6#0 CCCTCTCCTCACAAGACAACAGATTATGATGACCTACATATTCTTCACATCAAACCTAGC 179
consensus_6#1 CCCTCTCCTCACAAGACAGCAGAGTATGATGACCTACGTATTCTTCATATCAAACCTAGC 180
****************** **** ************* ********* ************
consensus_6#0 TTCAGCAGC-TGCTATAACTACAACAAGCTCCATCAGTTCAGGACTGCTTCTCCTTGGAC 238
consensus_6#1 TTCAGAAGCGTGATATAACTACAACAGGCTCCCTCAGCTCAGGACTGGTTCTCCTTGGAC 240
***** *** ** ************* ***** **** ********* ************
consensus_6#0 CCACCACGTCTGCAGCGGTGGAACCAGCTCGCACTCGGTGCCCCTTGACTTGAACTCTAG 298
consensus_6#1 CCACCACGTCTGCAGCGGTGGAACCAGATCGCACTCGATGCCCCTTGACTTGAACTCTAG 300
*************************** ********* **********************
consensus_6#0 GGACGATCTGCATCTCCCTGGCCAGCCTTTCTACTTGAAGTCTGAACTGCAGGAGGAGGA 358
consensus_6#1 GAACGATCTGCATCTCCCTGGCCAGCCCTTCTACTTGAAGCCTGATCTGCAGGAGGAGGA 360
* ************************* ************ **** **************
consensus_6#0 GGCTTCCGGA-ACCTCTCTGAGGCACCCCCTCGGAGATGAAAATAAGGGCCCTTGCATTG 417
consensus_6#1 GGCTTAGGGGGAACTATCTGGGGAACCCCTGGGGAAGATAAGTTAAGGGGCCTCCCGGGG 420
***** ** * ** **** ** ***** *** ** ****** *** * *
consensus_6#0 CAGGCCCATATATAACATTTGCGAACACGGAAAGAAAAGCCATTGGTAACATTTCACTAG 477
consensus_6#1 CTAGCCCGTTTAACAAATTGGGTACAGAGAGAAGAAACGCGATGGGTAAGACGGGAGAAA 480
* **** * ** * *** * * * ****** ** ** ***** * * *
consensus_6#0 -GCTTTGAAACACCTGCACCAAGCAAGTTTCTGAC-TTTAAAACACTCCATGAACGGACC 535
consensus_6#1 AGGTGCGGAGGGCTGGTAGCTGG-ACGTTTCGGACGTTTTAGAGGCCCTATAAGCGGACG 539
* * * * * * * * * * ***** *** *** * * * * ** * *****
consensus_6#0 GTCC-CGCGGTTTCCATTAGGCTTGACCCTTCTTCTGGCATTAGAGTTATT-TGACAGGA 593
consensus_6#1 GTCCGCGCGGGTTCCACGAGGCGTTGGCATTATCTCGGCTTTGGTGCGGGTGCGCCGGGA 599
**** ***** ***** **** * * ** * *** ** * * * * * ***
consensus_6#0 CTTTCGCTTGAAGCGAGTTTTACTTCAAACAGTGACGACAATATGCTCGCTTGATTGTAA 653
consensus_6#1 CTTCTCTTTGGCGCGGGTGAGA-TTGGACCAGGCGCCATAATT----------------- 641
*** *** *** ** * ** * *** * * ***
consensus_6#0 TTTGGGCGAGGAGCTT 669
consensus_6#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||