cluster # 600

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Oryza sativa
cluster # 600 cluster # 600 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_600#0 length = 643 sequences # 1

consensus_600#1 length = 620 sequences # 1

consensusID : consensus_600#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence

                              [GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGCCTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTCCTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTTGTGGACGACAAGACCATATCATACTGGAGAGATAGGATGAAGAGTTGGGGATACGATCCACTATTTTTAAGTGTTGATCAGAAATCAGGATTATCCGCTCTTGAAGAAACATTGGAAGGACAGACAACTGTAATTGTTGGTCCAAGCGGTGTTGGAAAGTCCAGTCTGATCAATGCTTTGAGAAGCAACCAGAACATCTCAGAAGAAGATCCCATACATAAACTAGTTGAGCAGAATAGTAAATGGTTTGGTGAACAACGGGTCGGTACCGTGTCGAAGAAAAGCGGCAAAGGAAAGCACACAACACGTCATGTTTCATTGCTTCCTATAGCTGGTGGAGGTTTTCTTGCTGATACTCCAGGATTTAACCAGCCTAGCCTGATGAAAGTGACCAAGAAGGGTCTTGCAGAAACATTTCCAGAGATAAGAAAGATGCTTGCCAGAGAATGAGCCCTCAAAAATG]

[+] EMBL AU093920             [GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGCCTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTCCTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTTGTGGACGACAAGACCATATCATACTGGAGAGATAGGATGAAGAGTTGGGGATACGATCCACTATTTTTAAGTGTTGATCAGAAATCAGGATTATCCGCTCTTGAAGAAACATTGGAAGGACAGACAACTGTAATTGTTGGTCCAAGCGGTGTTGGAAAGTCCAGTCTGATCAATGCTTTGAGAAGCAACCAGAACATCTCAGAAGAAGATCCCATACATAAACTAGTTGAGCAGAATAGTAAATGGTTTGGTGAACAACGGGTCGGTACCGTGTCGAAGAAAAGCGGCAAAGGAAAGCACACAACACGTCATGTTTCATTGCTTCCTATAGCTGGTGGAGGTTTTCTTGCTGATACTCCAGGATTTAACCAGCCTAGCCTGATGAAAGTGACCAAGAAGGGTCTTGCAGAAACATTTCCAGAGATAAGAAAGATGCTTGCCAGAGAATGAGCCCTCAAAAATG]




>consensus_600#0
GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGC
CTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTC
CTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTT
GTGGACGACAAGACCATATCATACTGGAGAGATAGGATGAAGAGTTGGGGATACGATCCA
CTATTTTTAAGTGTTGATCAGAAATCAGGATTATCCGCTCTTGAAGAAACATTGGAAGGA
CAGACAACTGTAATTGTTGGTCCAAGCGGTGTTGGAAAGTCCAGTCTGATCAATGCTTTG
AGAAGCAACCAGAACATCTCAGAAGAAGATCCCATACATAAACTAGTTGAGCAGAATAGT
AAATGGTTTGGTGAACAACGGGTCGGTACCGTGTCGAAGAAAAGCGGCAAAGGAAAGCAC
ACAACACGTCATGTTTCATTGCTTCCTATAGCTGGTGGAGGTTTTCTTGCTGATACTCCA
GGATTTAACCAGCCTAGCCTGATGAAAGTGACCAAGAAGGGTCTTGCAGAAACATTTCCA
GAGATAAGAAAGATGCTTGCCAGAGAATGAGCCCTCAAAAATG

consensusID : consensus_600#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGCCTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTCCTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTTGTGGACGACAAGGTAGCCAACAATTGCTTCTTCGATTTCAATTGCTTACTAAATTGTTACCTCTTTGTTGCGCTGTATAGTTCATTCTTCATTGCATTGGTGATTGAACTACGGATTATGATGTACTGATGCTCATTTCGTAATTTGCCATGACATCGTCAATATATAAGAGACAAATGAAATGTTTTCCCCCTGAACAGTGGGGAACGTAGGACCAAATTTTAGGGGGTTGCCAATGGAACGAGGTAAACTAATATAAGTATACATGGGAATATATAGTACTTCCTCCGTTTCATATTATAAGACTTTCTAGCATTGTCCACATTTATATATATGTTAATGAATCTTATAACCTGAAACAGAGGTAGTAGTTGNTAAAAAAATTAGAGNACCAAATTATGTTTTCATTGGNTACCTTTCCTNCTCTCTAGCAAGCATAA]

[+] EMBL AU075606             [GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGCCTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTCCTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTTGTGGACGACAAGGTAGCCAACAATTGCTTCTTCGATTTCAATTGCTTACTAAATTGTTACCTCTTTGTTGCGCTGTATAGTTCATTCTTCATTGCATTGGTGATTGAACTACGGATTATGATGTACTGATGCTCATTTCGTAATTTGCCATGACATCGTCAATATATAAGAGACAAATGAAATGTTTTCCCCCTGAACAGTGGGGAACGTAGGACCAAATTTTAGGGGGTTGCCAATGGAACGAGGTAAACTAATATAAGTATACATGGGAATATATAGTACTTCCTCCGTTTCATATTATAAGACTTTCTAGCATTGTCCACATTTATATATATGTTAATGAATCTTATAACCTGAAACAGAGGTAGTAGTTGNTAAAAAAATTAGAGNACCAAATTATGTTTTCATTGGNTACCTTTCCTNCTCTCTAGCAAGCATAA]




>consensus_600#1
GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGC
CTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTC
CTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTT
GTGGACGACAAGGTAGCCAACAATTGCTTCTTCGATTTCAATTGCTTACTAAATTGTTAC
CTCTTTGTTGCGCTGTATAGTTCATTCTTCATTGCATTGGTGATTGAACTACGGATTATG
ATGTACTGATGCTCATTTCGTAATTTGCCATGACATCGTCAATATATAAGAGACAAATGA
AATGTTTTCCCCCTGAACAGTGGGGAACGTAGGACCAAATTTTAGGGGGTTGCCAATGGA
ACGAGGTAAACTAATATAAGTATACATGGGAATATATAGTACTTCCTCCGTTTCATATTA
TAAGACTTTCTAGCATTGTCCACATTTATATATATGTTAATGAATCTTATAACCTGAAAC
AGAGGTAGTAGTTGNTAAAAAAATTAGAGNACCAAATTATGTTTTCATTGGNTACCTTTC
CTNCTCTCTAGCAAGCATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_600#0      GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGC 60
consensus_600#1      GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGC 60
                     ************************************************************

consensus_600#0      CTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTC 120
consensus_600#1      CTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTC 120
                     ************************************************************

consensus_600#0      CTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTT 180
consensus_600#1      CTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTT 180
                     ************************************************************

consensus_600#0      GTGGACGACAAGACCATATCATACTGGAGAGATAGGATGAAGAGTTGGGGATACGATCCA 240
consensus_600#1      GTGGACGACAAGGTAGCCAACAATTGCTTCTTCGATTTCAATTGCTTACTAAATTGTT-A 239
                     ************          * **           * **  * *    * *   *  *

consensus_600#0      CTATTTTTAAGTGTTGATCAGAAATCAGGATTATCCGCTCTTGAAGAAACATTGGAAGGA 300
consensus_600#1      CCTCTTTGTTGCGCTGTATAGT--------TCATTCTTCATTGCATTGGTGATTGAACTA 291
                     *   ***   * * **   **         * ** *    *** *       * ***  *

consensus_600#0      CAGACAACTGTA-ATTGTTGGTCCAAGCGGTGTTGGAAAGTCCAGTCTGATCAATGCTTT 359
consensus_600#1      CGGATTATGATGTACTGATGCTCATTTCGTAATTTGCCA---TGACATCGTCAATA-TAT 347
                     * **  *   *  * ** ** **    **   ** *  *        *  *****  * *

consensus_600#0      GAGAAGCAACCAGAACATCTCAGAAGAAGATCCCATACATAAACTAGTTGAGCAGAATAG 419
consensus_600#1      AAGAGACAAATGAAATGTTTTCCCCCTGAA---CAGTGGGGAAC--GTAGGACCAAATTT 402
                      ***  ***    **  * *         *   **      ***  ** *  *  ***  

consensus_600#0      TAAATGGTTTGGTGAACAACGGGTCGGTACCGTGTCGAAGAAAAGCGGCAAAGGAAAGCA 479
consensus_600#1      TAGGGGGTTGCCAATGGAACGAGGTAA-ACTAATATAAGTATACATGGGAATATATAGTA 461
                     **   ****        **** *     **       *  * *   ** **   * ** *

consensus_600#0      CACAACACGTCATGTTTCATTGCTTCCTATAGCTGGTGGAGGTTTTCTTGCTGATACTCC 539
consensus_600#1      CTTCCTCCGTTTCATATTATAAGACTTTCTAGC-ATTGTCCACATTTATATATATGTTAA 520
                     *      ***    * * **       * ****   **      **  *    **  *  

consensus_600#0      AGGATTTAACCAGCCTAGCCTGATGAAAGTGACCAAGAAGGGTCTTGCAGAAACATTTCC 599
consensus_600#1      TGAATCTTATAACCTGAAACAGA-GGTAGTAGTTGNTAAAAAAATTAGAGNACCAAATTA 579
                      * ** * *  * *  *  * ** *  ***       **     **  ** * **  *  

consensus_600#0      AGAGATAAGAAAGATGCTTGCCAGAGAATGAGCCCTCAAAAATG 643
consensus_600#1      TGTTTTCATTGGNTACCTTTCCTNCTCTCTAGCAAGCATAA--- 620
                      *   * *        *** **        ***   ** **