These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6004#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 459 fasta sequence [ATGGTAGATGATTACGCTGCACTGTTGATACCNCCAAGATATTCATCAAATTTTGATCCTGCCCGCTGATCCCCGACCATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTCTGATGAGGCTTTTCTGTTTTTCGCTGTTTTTCCCTCACATGGTCCATTTTGTTGTATACATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAAGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAAAAATCACTGGACGAAACATGCACTGAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTTCCACTTAGATCACAGCCAACCCTCTAACACATGCATCTGTTTTTCCTTGTCTGCGAGCGTGCGACAATGTGATACTCTGTTTTTGTCATATTCCAGTTTTGATCCGTCAAAAAAA] [+] EMBL AU096949 [ATGGTAGATGATTACGCTGCACTGTTGATACCNCCAAGATATTCATCAAATTTTGATCCTGCCCGCTGATCCCCGACCATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTCTGATGAGGCTTTTCTGTTTTTCGCTGTTTTTCCCTCACATGGTCCATTTTGTTGTATACATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAAGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAAAAA ] [+] EMBL AU068171 [ CTG CCGCTGATCCCGAACAATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTCTGATGAGGCTTTTCTGTTTTTCGCTGTTTTTCCCTCACATGGTCCATTTTGTTGTATACATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAAGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAATCTTCACTGGACGAAACATGCACTGAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTTCCACTTAGATCACAGCCAACCCTCTAACACATGCATCTGTTTTTCCTTGTCTGCGAGCGTGCGACAATGTGATACTCTGTTTTTGTCATATTCCAGTTTTGATCCGTCAAAAAAA] consensusID : consensus_6004#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [CTGCCGTTGATCCCGAACAATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTCTGATGAGGCTTTTCTGTTCTTCGCTGTTTTTCCCTCACATGGCCCATTTTGTTGTATACATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAAGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAATCTTCACTGGACGAAACATGCACTGAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTGCCACTTAAAAAAAAAAAAAA] [+] EMBL CA999392 [CTGCCGTTGATCCCGAACAATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTCTGATGAGGCTTTTCTGTTCTTCGCTGTTTTTCCCTCACATGGCCCATTTTGTTGTATACATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAAGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAATCTTCACTGGACGAAACATGCACTGAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTGCCACTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6004#0 ATGGTAGATGATTACGCTGCACTGTTGATACCNCCAAGATATTCATCAAATTTTGATCCT 60 consensus_6004#1 ----------------------------------------------------------CT 2 ** consensus_6004#0 GCCCGCTGATCCCCGACCATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTC 120 consensus_6004#1 GCC-GTTGATCCCGAACAATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTC 61 *** * ******* ** ****************************************** consensus_6004#0 TGATGAGGCTTTTCTGTTTTTCGCTGTTTTTCCCTCACATGGTCCATTTTGTTGTATACA 180 consensus_6004#1 TGATGAGGCTTTTCTGTTCTTCGCTGTTTTTCCCTCACATGGCCCATTTTGTTGTATACA 121 ****************** *********************** ***************** consensus_6004#0 TGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAA 240 consensus_6004#1 TGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAA 181 ************************************************************ consensus_6004#0 GTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAAAAATCACTGGACGAAACATGCACT 300 consensus_6004#1 GTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAATCTTCACTGGACGAAACATGCACT 241 ************************************ ********************* consensus_6004#0 GAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTTCCACTTAGATCACAGC 360 consensus_6004#1 GAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTGCCACTTAAAAAAAAAA 301 ******************************************* ******* * * * consensus_6004#0 CAACCCTCTAACACATGCATCTGTTTTTCCTTGTCTGCGAGCGTGCGACAATGTGATACT 420 consensus_6004#1 AAAA-------------------------------------------------------- 305 ** consensus_6004#0 CTGTTTTTGTCATATTCCAGTTTTGATCCGTCAAAAAAA 459 consensus_6004#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||