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Oryza sativa
cluster # 6011 cluster # 6011       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6011#0 length = 1622 sequences # 3  

consensusID : consensus_6011#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1622
fasta sequence
                              [CTTCTTCCTCCTCCCTTTCTTGGCCTCTCACCTCCACAACCCACCCTTCCTTCCTCCCTTCCTCCCCTTGGTGCGTTCTTGATTGCTGCAGAGAGGGAAAGAGAGAGAGAGAGGGAGAGATGGGGAACATCTGTGGTGGTTCAGGGAAGGCTCATGTATCGGGGGATTGCAGGCCGCCTAGCTCAGGGACAATGACCCCCAAAACAAGCAGCAGCGTCACAACCAGCAATAGCACAACTGGGAAGCTCTCCTCTGTTGGCAGCAGCTTCATGGCGTCTTCCGGAAGCGGCGGCACGAGCAGCGGATTCGACGACGGGGTGTACCCAGAGGGCCAGATCCTGGAGGCACCAAACCTCAGGACATTCACATTCATTGAGCTCAGGACAGCCACCAAGAACTTCAGGCCGGATAGTGTTCTTGGGGAGGGAGGCTTTGGGAGGGTGTACAAAGGATGGGTGGATGAGAAGACGATGAACCCGGTGAAGGGCGGCACCGGCATGGTTGTTGCTGTCAAGAAGCTCAACTCAGAGAGCATGCAAGGTTATGAGGAATGACAGTCAGAGATAAACTTTCTGGGTAGGTTCTCGCATCCAAACCTAGTCAAGCTCTTGGGCTACTGCTTTGAGGACAAGGAACTTTTGCTCGTGTATGAATTCATGGCCAAAGGGAGCTTGGAGAACCATCTTTTCAAGAAAGGATGTCCTCCACTATCATGGGAACTGAGGCTGAAGATAGCCATTGGTGCAGCTCGAGGACTTGCGTTCCTGCATGCCTCAGAAAAACAAGTCATCTACCGTGATTTTAAGGCTTCCAACATTCTTCTAGATGCTAACTATAATGCAAAGCTCTCTGATTTTGGGCTTGCTAAGCTTGGACCAACTGGTAGCAACTCACATATCACAACAAGGGTCATGGGCACATATGGTTATGCAGCACCGGAGTATGTAGCCACTGGTCATTTATATGTCAAGAGTGATGTTTACGGTTTCGGAGTTGTGATGCTGGAGATGATGTCCGGTCAGCGAGCACTAGACCCCAACCGTCCTAATGGGCAGCTCAGCCTTGTGGACTGGGCGAAGCCCTACTTGGCGGACCGGAGAAAGCTTGCCCGCCTCATGGACCCCCGGTTTGAGGGCCAGTATAACTCCAAACAAGCTGTTCAGGCGGCGCAGTTGACGTTAAATTGCCTGGCAGGTGAGCCCAGGAGCAGGCCCTCAATGAAGGAAGTTCTTGAGACACTCGAAAGGATCGAATCAATGAAGAGCCGAGCAAGGGATGCAAGAGGAAGCGGTTCATCAAGGGACCATAGCCATGGTCGCACCACAGCGCACCAACGGTCATCGCCGCGCCCTGATGGTCGCCGTGGATCAAGGACCAATGGTCACGCCACGAAGGCACGGTGATAAACAGCATTGGAGCTGATGACATTCTTCCTGTAAATGGCCTAAATTTTGTCTGATGTTCAGTTGGAGATGGTGATGTTTATTTGTTGCTATATCATGAAAGAAGGCCCTTGTTGCCCAATCATGATGAGTGTAAAATGTAGCAACAAGAAAGATATAACTGTAATTTGTAACCACTAGAAATAGAAGGAATAATTATTTAAAAAAAAAAAAAAAAAA]

[+] EMBL CF277371             [CTTCTTCCTCCTCCCTTTCTTGGCCTCTCACCTCCACAACCCACCCTTCCTTCCTCCCTTCCTCCCCTTGGTGCGTTCTTGATTGCTGCAGAGAGGGAAAGAGAGAGAGAGAGGGAGAGATGGGGAACATCTGTGGTGGTTCAGGGAAGGCTCATGTATCGGGGGATTGCAGGCCGCCTAGCTCAGGGACAATGACCCCCAAAACAAGCAGCAGCGTCACAACCAGCAATAGCACAACTGGGAAGCTCTCCTCTGTTGGCAGCAGCTTCATGGCGTCTTCCGGAAGCGGCGGCACGAGCAGCGGATTCGACGACGGGGTGTACCCAGAGGGCCAGATCCTGGAGGCACCAAACCTCAGGACATTCACATTCATTGAGCTCAGGACAGCCACCAAGAACTTCAGGCCGGATAGTGTTCTTGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK111716             [  TCTTCCTCCTCCCTTTCTTGGCCTCTCTCCTCCACAACCCACCCTTCCTTCCTCCCTTCCTCCCCTTGGTGCGTTCTTGATTGCTGCAGAGAGGGAAAGAGAGAGAGAGAGGGAGAGATGGGGAACATCTGTGGTGGTTCAGGGAAGGCTCATGTATCGGGGGATTGCAGGCCGCCTAGCTCAGGGACAATGACCCCCAAAACAAGCAGCAGCGTCACAACCAGCAATAGCACAACTGGGAAGCTCTCCTCTGTTGGCAGCAGCTTCATGGCGTCTTCCGGAAGCGGCGGCACGAGCAGCGGATTCGACGACGGGGTGTACCCAGAGGGCCAGATCCTGGAGGCACCAAACCTCAGGACATTCACATTCATTGAGCTCAGGACAGCCACCAAGAACTTCAGGCCGGATAGTGTTCTTGGGGAGGGAGGCTTTGGGAGGGTGTACAAAGGATGGGTGGATGAGAAGACGATGAACCCGGTGAAGGGCGGCACCGGCATGGTTGTTGCTGTCAAGAAGCTCAACTCAGAGAGCATGCAAGGTTATGAGGAATGACAGTCAGAGATAAACTTTCTGGGTAGGTTCTCGCATCCAAACCTAGTCAAGCTCTTGGGCTACTGCTTTGAGGACAAGGAACTTTTGCTCGTGTATGAATTCATGGCCAAAGGGAGCTTGGAGAACCATCTTTTCAAGAAAGGATGTCCTCCACTATCATGGGAACTGAGGCTGAAGATAGCCATTGGTGCAGCTCGAGGACTTGCGTTCCTGCATGCCTCAGAAAAACAAGTCATCTACCGTGATTTTAAGGCTTCCAACATTCTTCTAGATGCTAACTATAATGCAAAGCTCTCTGATTTTGGGCTTGCTAAGCTTGGACCAACTGGTAGCAACTCACATATCACAACAAGGGTCATGGGCACATATGGTTATGCAGCACCGGAGTATGTAGCCACTGGTCATTTATATGTCAAGAGTGATGTTTACGGTTTCGGAGTTGTGATGCTGGAGATGATGTCCGGTCAGCGAGCACTAGACCCCAACCGTCCTAATGGGCAGCTCAGCCTTGTGGACTGGGCGAAGCCCTACTTGGCGGACCGGAGAAAGCTTGCCCGCCTCATGGACCCCCGGTTTGAGGGCCAGTATAACTCCAAACAAGCTGTTCAGGCGGCGCAGTTGACGTTAAATTGCCTGGCAGGTGAGCCCAGGAGCAGGCCCTCAATGAAGGAAGTTCTTGAGACACTCGAAAGGATCGAATCAATGAAGAGCCGAGCAAGGGATGCAAGAGGAAGCGGTTCATCAAGGGACCATAGCCATGGTCGCACCACAGCGCACCAACGGTCATCGCCGCGCCCTGATGGTCGCCGTGGATCAAGGACCAATGGTCACGCCACGAAGGCACGGTGATAAACAGCATTGGAGCTGATGACATTCTTCCTGTAAATGGCCTAAATTTTGTCTGATGTTCAGTTGGAGATGGTGATGTTTATTTGTTGCTATATCATGAAAGAAGGCCCTTGTTGCCCAATCATGATGAGTGTAAAATGTAGCAACAAGAAAGATATAACTGTAATTTGTAACCACTAGAAATAGAAGGA                            ]
[-] EMBL CF277372             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGTGAGCCCAGGAGCAGGCCCTCAATGAAGGAAGTTCTTGAGACACTCGAAAGGATCGAATCAATGAAGAGCCGAGCAAGGGATGCAAGAGGAAGCGGTTCATCAAGGGACCATAGCCATGGTTGCACCACAGGGCACCAACGGTTATTGCCGCGCCCTGATGGTTGCCGTGGATCAAGGACCAATGGTCACGCCCCGAAGGCACGGTGATAAACAGCATTGGAGCTGAAAACATTTTTCCTGTAAATGGCCTAAATTTTGTTTGATGTTCAGTTGAAAATGGTGATGTTTATTTGTTGCTATATCATGAAAGAAGGCCCTTGTTGCCCAATCATGATGAGTGTAAAATGTAGCCCCCAGAAAGATAAAAATGTAATTTGTAACCCCTAGAAATAGAAGGAATAATTATTTAAAAAAAAAAAAAAAAAA]


>consensus_6011#0 CTTCTTCCTCCTCCCTTTCTTGGCCTCTCACCTCCACAACCCACCCTTCCTTCCTCCCTT CCTCCCCTTGGTGCGTTCTTGATTGCTGCAGAGAGGGAAAGAGAGAGAGAGAGGGAGAGA TGGGGAACATCTGTGGTGGTTCAGGGAAGGCTCATGTATCGGGGGATTGCAGGCCGCCTA GCTCAGGGACAATGACCCCCAAAACAAGCAGCAGCGTCACAACCAGCAATAGCACAACTG GGAAGCTCTCCTCTGTTGGCAGCAGCTTCATGGCGTCTTCCGGAAGCGGCGGCACGAGCA GCGGATTCGACGACGGGGTGTACCCAGAGGGCCAGATCCTGGAGGCACCAAACCTCAGGA CATTCACATTCATTGAGCTCAGGACAGCCACCAAGAACTTCAGGCCGGATAGTGTTCTTG GGGAGGGAGGCTTTGGGAGGGTGTACAAAGGATGGGTGGATGAGAAGACGATGAACCCGG TGAAGGGCGGCACCGGCATGGTTGTTGCTGTCAAGAAGCTCAACTCAGAGAGCATGCAAG GTTATGAGGAATGACAGTCAGAGATAAACTTTCTGGGTAGGTTCTCGCATCCAAACCTAG TCAAGCTCTTGGGCTACTGCTTTGAGGACAAGGAACTTTTGCTCGTGTATGAATTCATGG CCAAAGGGAGCTTGGAGAACCATCTTTTCAAGAAAGGATGTCCTCCACTATCATGGGAAC TGAGGCTGAAGATAGCCATTGGTGCAGCTCGAGGACTTGCGTTCCTGCATGCCTCAGAAA AACAAGTCATCTACCGTGATTTTAAGGCTTCCAACATTCTTCTAGATGCTAACTATAATG CAAAGCTCTCTGATTTTGGGCTTGCTAAGCTTGGACCAACTGGTAGCAACTCACATATCA CAACAAGGGTCATGGGCACATATGGTTATGCAGCACCGGAGTATGTAGCCACTGGTCATT TATATGTCAAGAGTGATGTTTACGGTTTCGGAGTTGTGATGCTGGAGATGATGTCCGGTC AGCGAGCACTAGACCCCAACCGTCCTAATGGGCAGCTCAGCCTTGTGGACTGGGCGAAGC CCTACTTGGCGGACCGGAGAAAGCTTGCCCGCCTCATGGACCCCCGGTTTGAGGGCCAGT ATAACTCCAAACAAGCTGTTCAGGCGGCGCAGTTGACGTTAAATTGCCTGGCAGGTGAGC CCAGGAGCAGGCCCTCAATGAAGGAAGTTCTTGAGACACTCGAAAGGATCGAATCAATGA AGAGCCGAGCAAGGGATGCAAGAGGAAGCGGTTCATCAAGGGACCATAGCCATGGTCGCA CCACAGCGCACCAACGGTCATCGCCGCGCCCTGATGGTCGCCGTGGATCAAGGACCAATG GTCACGCCACGAAGGCACGGTGATAAACAGCATTGGAGCTGATGACATTCTTCCTGTAAA TGGCCTAAATTTTGTCTGATGTTCAGTTGGAGATGGTGATGTTTATTTGTTGCTATATCA TGAAAGAAGGCCCTTGTTGCCCAATCATGATGAGTGTAAAATGTAGCAACAAGAAAGATA TAACTGTAATTTGTAACCACTAGAAATAGAAGGAATAATTATTTAAAAAAAAAAAAAAAA AA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)