These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6013#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 426 fasta sequence [GCGCCATCATGCCTGTAGCCTCCGTCGTGCTCCTCCTCCACCTCCTCTCCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTCCGACCGCGAGTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCGAGGCTGCACGTCACGCGGC-TGGAC-TTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGCGCGGCGTTCCCGCACCTCGCGTTCGCGC-TGCCGCACCTCCAGTCGCTGTTCCTCGTCGACTGCTTCAAGAACCCGGCGGCCACCACGGCGTTCACGCTGCCGCCGTCGGCCAACCTCACCTCCTCCC] [+] EMBL AU182718 [GCGCCATCATGCCTGTAGCCTCCGTCGTGCTCCTCCTCCACCTCCTCTCCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTCCGACCGCGAGTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCGAGGCTGCACGTCACGCGGC TGGAC TTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGCGCGGCGTTCCCGCACCTCGCGTTCGCGC TGCCGCACCTCCAGTCGCTGTTCCTCGTCGACTGCTTCAAGAACCCGGCGGCCACCACGGCGTTCACGCTGCCGCCGTCGGCCAACCTCACCTCCTCCC] [+] EMBL C73914 [GCGCCATCATGCCTGTAGCCTCCGTCGTGCTCCTCCTCCACCTCCTCTCCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTCCGACCGCGAGTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCGAGGCTGCACGTNACGCGGCTTGGACTTTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGCGCGGCGTTNCCGAACCTCGCGTTCG GCTTGCCGAAACTTCAGTCGCTGTTCCTCGTCGACTTCTTTAAag ] consensusID : consensus_6013#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [GCGCACATCATNNCTGTAGCCTCCGTCGTGCTCCTGCTNCACCTGCTCTNCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTNCGACCGCGAGTNGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCNTGTNCCGGCCGTCGGGAACNTNTCGTCGGCGGCGGCGAGGNTTCACGTAACGNGGCTTGGA] [+] EMBL C73945 [GCGCACATCATNNCTGTAGCCTCCGTCGTGCTCCTGCTNCACCTGCTCTNCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTNCGACCGCGAGTNGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCNTGTNCCGGCCGTCGGGAACNTNTCGTCGGCGGCGGCGAGGNTTCACGTAACGNGGCTTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6013#0 GCGC-CATCATGCCTGTAGCCTCCGTCGTGCTCCTCCTCCACCTCCTCTCCATGGCGGCG 59 consensus_6013#1 GCGCACATCATNNCTGTAGCCTCCGTCGTGCTCCTGCTNCACCTGCTCTNCATGGCGGCG 60 **** ****** ********************** ** ***** **** ********** consensus_6013#0 GCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATG 119 consensus_6013#1 GCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATG 120 ************************************************************ consensus_6013#0 GAGGCCGTCTCCTCCGACCGCGAGTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCG 179 consensus_6013#1 GAGGCCGTCTCCTNCGACCGCGAGTNGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCG 180 ************* *********** ********************************** consensus_6013#0 TGGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCG 239 consensus_6013#1 TGGCCCGGCCTCGAGTGCAAGCNTGTNCCGGCCGTCGGGAACNTNTCGTCGGCGGCGGCG 240 ********************** *** ******* ******* * *************** consensus_6013#0 AGGCTGCACGTCACGCGGCTGGACTTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGC 299 consensus_6013#1 AGGNTTCACGTAACGNGGCTTGGA------------------------------------ 264 *** * ***** *** **** * consensus_6013#0 GCGGCGTTCCCGCACCTCGCGTTCGCGCTGCCGCACCTCCAGTCGCTGTTCCTCGTCGAC 359 consensus_6013#1 ------------------------------------------------------------ consensus_6013#0 TGCTTCAAGAACCCGGCGGCCACCACGGCGTTCACGCTGCCGCCGTCGGCCAACCTCACC 419 consensus_6013#1 ------------------------------------------------------------ consensus_6013#0 TCCTCCC 426 consensus_6013#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||