cluster # 6013

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Oryza sativa
cluster # 6013 cluster # 6013 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6013#0 length = 426 sequences # 2

consensus_6013#1 length = 264 sequences # 1

consensusID : consensus_6013#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 426
fasta sequence

                              [GCGCCATCATGCCTGTAGCCTCCGTCGTGCTCCTCCTCCACCTCCTCTCCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTCCGACCGCGAGTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCGAGGCTGCACGTCACGCGGC-TGGAC-TTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGCGCGGCGTTCCCGCACCTCGCGTTCGCGC-TGCCGCACCTCCAGTCGCTGTTCCTCGTCGACTGCTTCAAGAACCCGGCGGCCACCACGGCGTTCACGCTGCCGCCGTCGGCCAACCTCACCTCCTCCC]

[+] EMBL AU182718             [GCGCCATCATGCCTGTAGCCTCCGTCGTGCTCCTCCTCCACCTCCTCTCCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTCCGACCGCGAGTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCGAGGCTGCACGTCACGCGGC TGGAC TTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGCGCGGCGTTCCCGCACCTCGCGTTCGCGC TGCCGCACCTCCAGTCGCTGTTCCTCGTCGACTGCTTCAAGAACCCGGCGGCCACCACGGCGTTCACGCTGCCGCCGTCGGCCAACCTCACCTCCTCCC]
[+] EMBL C73914               [GCGCCATCATGCCTGTAGCCTCCGTCGTGCTCCTCCTCCACCTCCTCTCCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTCCGACCGCGAGTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCGAGGCTGCACGTNACGCGGCTTGGACTTTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGCGCGGCGTTNCCGAACCTCGCGTTCG GCTTGCCGAAACTTCAGTCGCTGTTCCTCGTCGACTTCTTTAAag                                                         ]




>consensus_6013#0
GCGCCATCATGCCTGTAGCCTCCGTCGTGCTCCTCCTCCACCTCCTCTCCATGGCGGCGG
CGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGG
AGGCCGTCTCCTCCGACCGCGAGTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGT
GGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCGA
GGCTGCACGTCACGCGGCTGGACTTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGCG
CGGCGTTCCCGCACCTCGCGTTCGCGCTGCCGCACCTCCAGTCGCTGTTCCTCGTCGACT
GCTTCAAGAACCCGGCGGCCACCACGGCGTTCACGCTGCCGCCGTCGGCCAACCTCACCT
CCTCCC

consensusID : consensus_6013#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [GCGCACATCATNNCTGTAGCCTCCGTCGTGCTCCTGCTNCACCTGCTCTNCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTNCGACCGCGAGTNGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCNTGTNCCGGCCGTCGGGAACNTNTCGTCGGCGGCGGCGAGGNTTCACGTAACGNGGCTTGGA]

[+] EMBL C73945               [GCGCACATCATNNCTGTAGCCTCCGTCGTGCTCCTGCTNCACCTGCTCTNCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTNCGACCGCGAGTNGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCNTGTNCCGGCCGTCGGGAACNTNTCGTCGGCGGCGGCGAGGNTTCACGTAACGNGGCTTGGA]




>consensus_6013#1
GCGCACATCATNNCTGTAGCCTCCGTCGTGCTCCTGCTNCACCTGCTCTNCATGGCGGCG
GCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATG
GAGGCCGTCTCCTNCGACCGCGAGTNGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCG
TGGCCCGGCCTCGAGTGCAAGCNTGTNCCGGCCGTCGGGAACNTNTCGTCGGCGGCGGCG
AGGNTTCACGTAACGNGGCTTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6013#0      GCGC-CATCATGCCTGTAGCCTCCGTCGTGCTCCTCCTCCACCTCCTCTCCATGGCGGCG 59
consensus_6013#1      GCGCACATCATNNCTGTAGCCTCCGTCGTGCTCCTGCTNCACCTGCTCTNCATGGCGGCG 60
                      **** ******  ********************** ** ***** **** **********

consensus_6013#0      GCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATG 119
consensus_6013#1      GCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATG 120
                      ************************************************************

consensus_6013#0      GAGGCCGTCTCCTCCGACCGCGAGTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCG 179
consensus_6013#1      GAGGCCGTCTCCTNCGACCGCGAGTNGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCG 180
                      ************* *********** **********************************

consensus_6013#0      TGGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCG 239
consensus_6013#1      TGGCCCGGCCTCGAGTGCAAGCNTGTNCCGGCCGTCGGGAACNTNTCGTCGGCGGCGGCG 240
                      ********************** *** ******* ******* * ***************

consensus_6013#0      AGGCTGCACGTCACGCGGCTGGACTTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGC 299
consensus_6013#1      AGGNTTCACGTAACGNGGCTTGGA------------------------------------ 264
                      *** * ***** *** **** *                                      

consensus_6013#0      GCGGCGTTCCCGCACCTCGCGTTCGCGCTGCCGCACCTCCAGTCGCTGTTCCTCGTCGAC 359
consensus_6013#1      ------------------------------------------------------------
                                                                                  

consensus_6013#0      TGCTTCAAGAACCCGGCGGCCACCACGGCGTTCACGCTGCCGCCGTCGGCCAACCTCACC 419
consensus_6013#1      ------------------------------------------------------------
                                                                                  

consensus_6013#0      TCCTCCC 426
consensus_6013#1      -------