cluster # 6016

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Oryza sativa
cluster # 6016 cluster # 6016 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6016#0 length = 1203 sequences # 2

consensus_6016#1 length = 266 sequences # 1

consensusID : consensus_6016#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1203
fasta sequence

                              [ACGATACACTCCACTCCTACTCTTTTCTTTTCAAGTTTTTGAATGCTCCGCTTGCTCTCGCCTCGTCTCCTCCTCGATTCTCGTGTCGCTGCTGCTGCTGCTGCTGCTGTTGAGCAGAGCAATCTCTCGCTCGTCTGCTTGGTGTTTGCTCGATATTGAGATCGAATAGGAAGTAGAGTTAGAGCGAGTGAAGTGATTGCTCCTTTCATTGATGGCGAGCGAGCTACCTGTGGTTAGTTTCCAGCTTTTCTGAGCTGTACTGTTGGTGTGGGTGTGGTCAATCCGTGAAAAATCCCCAAAATCCTGTAAAGTTTCATCCCGAATTCGTTCCAGAAATCCATCCATTTCTTGGATTTGATCTTTGTGGAATCGAATCATCAATCCAATCTCGTTGGGTCTTCACGGCTCCGATTGGGGATTTAGCGGAGGTGTGTGTTCGAGTGGTAGCAATGGCGAGGTTGGTGGTGGTGATTGTGGCGGTGGCCATGGCGGCGTGGTGGGCGGTGGCGGCGGTGGAGGGGTTGGGGATAAACTGGGGGACGCAGGCGACGCACCCGCTGCCGCCCAAGGCGGTGGTGCAGCTGCTCAAGGACAACGGGATCGCCAAGGTGAAGCTGTTCGACACCGACTTCGCCGCCATGAGCGCGCTCGCCGGGAGCGGCGTCGAGGTGATGGTCGCCATCCCCAACGAGGACCTCGCCACCATGGCCAGCGACTACGGCAACGCCAAGGACTGGGTCAAGAAGAACGTAAAGCGCTTCGACTTCGACGGCGGCGTCACCATCAAGTATGTGGCCGTTGGCAATGAGCCCTTCTTGAAAGCATATAATGGTTCGTTCATCAACATCACATTGCCGGCGCTGCAGAACGTCCAGAACGCGCTGAACGACGCCGGCATTGGCGACCGGATCAAGGCCACCGTCCCTCTCAACGCCGACGTGTACGAATCCACGGTGCCGTCCGCCGGCCGCTTCCGCCCCGAGATCGCCGGCCTGATGACGGGCATCGTCAAGTTCCTGGCCAAGAACAACGCGCCCTTCACCGTCAACATCTACCCCTTCCTCAGCCTGTACCTGGACGAACACTTCCCGATCAACTTCGCCTTCTTCGACGGCGGCTCAACGCCGGTGAACGACGGCGGCATCATGTACACCAACGTGTTCGACGCCAACTTCGACACGCTGGTTGCCGCGCTCAAGGCCG]

[+] EMBL AK068262             [ACGATACACTCCACTCCTACTCTTTTCTTTTCAAGTTTTTGAATGCTCCGCTTGCTCTCGCCTCGTCTCCTCCTCGATTCTCGTGTCGCTGCTGCTGCTGCTGCTGCTGTTGAGCAGAGCAATCTCTCGCTCGTCTGCTTGGTGTTTGCTCGATATTGAGATCGAATAGGAAGTAGAGTTAGAGCGAGTGAAGTGATTGCTCCTTTCATTGATGGCGAGCGAGCTACCTGTGGTTAGTTTCCAGCTTTTCTGAGCTGTACTGTTGGTGTGGGTGTGGTCAATCCGTGAAAAATCCCCAAAATCCTGTAAAGTTTCATCCCGAATTCGTTCCAGAAATCCATCCATTTCTTGGATTTGATCTTTGTGGAATCGAATCATCAATCCAATCTCGTTGGGTCTTCACGGCTCCGATTGGGGATTTAGCGGAGGTGTGTGTTCGAGTGGTAGCAATGGCGAGGTTGGTGGTGGTGATTGTGGCGGTGGCCATGGCGGCGTGGTGGGCGGTGGCGGCGGTGGAGGGGTTGGGGATAAACTGGGGGACGCAGGCGACGCACCCGCTGCCGCCCAAGGCGGTGGTGCAGCTGCTCAAGGACAACGGGATCGCCAAGGTGAAGCTGTTCGACACCGACTTCGCCGCCATGAGCGCGCTCGCCGGGAGCGGCGTCGAGGTGATGGTCGCCATCCCCAACGAGGACCTCGCCACCATGGCCAGCGACTACGGCAACGCCAAGGACTGGGTCAAGAAGAACGTAAAGCGCTTCGACTTCGACGGCGGCGTCACCATCAAGTATGTGGCCGTTGGCAATGAGCCCTTCTTGAAAGCATATAATGGTTCGTTCATCAACATCACATTGCCGGCGCTGCAGAACGTCCAGAACGCGCTGAACGACGCCGGCATTGGCGACCGGATCAAGGCCACCGTCCCTCTCAACGCCGACGTGTACGAATCCACGGTGCCGTCCGCCGGCCGCTTCCGCCCCGAGATCGCCGGCCTGATGACGGGCATCGTCAAGTTCCTGGCCAAGAACAACGCGCCCTTCACCGTCAACATCTACCCCTTCCTCAGCCTGTACCTGGACGAACACTTCCCGATCAACTTCGCCTTCTTCGACGGCGGCTCAACGCCGGTGAACGACGGCGGCATCATGTACACCAACGTGTTCGACGCCAACTTCGACACGCTGGTTGCCGCGCTCAAGGCCG]
[+] EMBL AK105668             [                                                             CTCGTCTCCTCCTCGATTCTCGTGTCGCTGCTGCTGCTGCTGCTGCTGTTGAGCAGAGCAATCTCTCGCTCGTCTGCTTGGTGTTTGCTCGATATTGAGATCGAATAGGAAGTAGAGTTAGAGCGAGTGAAGTGATTGCTCCTTTCATTGATGGCGAGCGAGCTACCTGTGGTTAGTTTCCAGCTTTTCTGAGCTGTACTGTTGGTGTGGGTGTGGTCAATCCGTGAAAAATCCCCAAAATCCTGTAAAGTTTCATCCCGAATTCGTTCCAGAAATCCATCCATTTCTTGGATTTGATCTTTGTGGAATCGAATCATCAATCCAATCTCGTTGGGTCTTCACGGCTCCGATTGGGGATTTAGCGGAGGTGTGTGTTCGAGTGGTAGCAATGGCGAGGTTGGTGGTGGTGATTGTGGCGGTGGCCATGGCGGCGTGGTGGGCGGTGGCGGCGGTGGAGGGGTTGGGGATAAACTGGGGGACGCAGGCGACGCACCCGCTGCCGCCCAAGGCGGTGGTGCAGCTGCTCAAGGACAACGGGATCGCCAAGGTGAAGCTGTTCGACACCGACTTCGCCGCCATGAGCGCGCTCGCCGGGAGCGGCGTCGAGGTGATGGTCGCCATCCCCAACAAGGACCTCGCCACCATGGCCAGCGACTACGGCAACGCCAAGGACTGGGTCAAGAAGAACGTCAAGCGCTTCGACTTCGACGGCGGCGTCACCATCAAGTATGTGGCCGTTGGCAATGAGCCCTTCTTGAAAGCATATAATGGTTCGTTCATCAACATCACATTGCCGGCGCTGCAGAACGTCCAGAACGCGCTGAACGACGCCGGCATTGGCGACCGGATCAAGGCCACCGTCCCCCTCAACGCCGACGTGTACGAATCCACGGTGCCGTCCGCCGGCCGCTTCCGCCCCGAGATCGCCGGCCTGATGACGGACATCGTCAAGTTCCTGGCCAAGAACAACGCGCCCTTCACCGTCAACATCTACCCCTTCCTCAGCCTGTACCTGGACGAACACTTCCCGATCAACTTCGCCTTCTTCGACGGCGGCTCAACGCCGGTGAACGACGGCGGCATCATGTACACCAACGTGTTCGACGCCAACTTCGACACGCTGGTTGCCGCGCTCAAGGCCG]




>consensus_6016#0
ACGATACACTCCACTCCTACTCTTTTCTTTTCAAGTTTTTGAATGCTCCGCTTGCTCTCG
CCTCGTCTCCTCCTCGATTCTCGTGTCGCTGCTGCTGCTGCTGCTGCTGTTGAGCAGAGC
AATCTCTCGCTCGTCTGCTTGGTGTTTGCTCGATATTGAGATCGAATAGGAAGTAGAGTT
AGAGCGAGTGAAGTGATTGCTCCTTTCATTGATGGCGAGCGAGCTACCTGTGGTTAGTTT
CCAGCTTTTCTGAGCTGTACTGTTGGTGTGGGTGTGGTCAATCCGTGAAAAATCCCCAAA
ATCCTGTAAAGTTTCATCCCGAATTCGTTCCAGAAATCCATCCATTTCTTGGATTTGATC
TTTGTGGAATCGAATCATCAATCCAATCTCGTTGGGTCTTCACGGCTCCGATTGGGGATT
TAGCGGAGGTGTGTGTTCGAGTGGTAGCAATGGCGAGGTTGGTGGTGGTGATTGTGGCGG
TGGCCATGGCGGCGTGGTGGGCGGTGGCGGCGGTGGAGGGGTTGGGGATAAACTGGGGGA
CGCAGGCGACGCACCCGCTGCCGCCCAAGGCGGTGGTGCAGCTGCTCAAGGACAACGGGA
TCGCCAAGGTGAAGCTGTTCGACACCGACTTCGCCGCCATGAGCGCGCTCGCCGGGAGCG
GCGTCGAGGTGATGGTCGCCATCCCCAACGAGGACCTCGCCACCATGGCCAGCGACTACG
GCAACGCCAAGGACTGGGTCAAGAAGAACGTAAAGCGCTTCGACTTCGACGGCGGCGTCA
CCATCAAGTATGTGGCCGTTGGCAATGAGCCCTTCTTGAAAGCATATAATGGTTCGTTCA
TCAACATCACATTGCCGGCGCTGCAGAACGTCCAGAACGCGCTGAACGACGCCGGCATTG
GCGACCGGATCAAGGCCACCGTCCCTCTCAACGCCGACGTGTACGAATCCACGGTGCCGT
CCGCCGGCCGCTTCCGCCCCGAGATCGCCGGCCTGATGACGGGCATCGTCAAGTTCCTGG
CCAAGAACAACGCGCCCTTCACCGTCAACATCTACCCCTTCCTCAGCCTGTACCTGGACG
AACACTTCCCGATCAACTTCGCCTTCTTCGACGGCGGCTCAACGCCGGTGAACGACGGCG
GCATCATGTACACCAACGTGTTCGACGCCAACTTCGACACGCTGGTTGCCGCGCTCAAGG
CCG

consensusID : consensus_6016#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [TGCAGTTCCTGGCCAACAACAGCGCGCCGTTCACCGTCAACATCTACCCTTTCATCAGCCTCTACCTCAACGACGACTTCCCCGTCGACTTCGCCTTCTTCGACGGCGGCGCGACGCCGGTGGTGGACAACGGCATCTCCTACACCAACGTGTTCGACGCCAACTTCGACACGCTGGTGGCGGCGCTCAAGGGCGTCGGCCACGGCGACATGCCCATCGTCGTCGGCGAGGTCGTCTGGCCCACCGACGGCGACAAGCACGCCACC]

[+] EMBL OSR20041A            [TGCAGTTCCTGGCCAACAACAGCGCGCCGTTCACCGTCAACATCTACCCTTTCATCAGCCTCTACCTCAACGACGACTTCCCCGTCGACTTCGCCTTCTTCGACGGCGGCGCGACGCCGGTGGTGGACAACGGCATCTCCTACACCAACGTGTTCGACGCCAACTTCGACACGCTGGTGGCGGCGCTCAAGGGCGTCGGCCACGGCGACATGCCCATCGTCGTCGGCGAGGTCGTCTGGCCCACCGACGGCGACAAGCACGCCACC]




>consensus_6016#1
TGCAGTTCCTGGCCAACAACAGCGCGCCGTTCACCGTCAACATCTACCCTTTCATCAGCC
TCTACCTCAACGACGACTTCCCCGTCGACTTCGCCTTCTTCGACGGCGGCGCGACGCCGG
TGGTGGACAACGGCATCTCCTACACCAACGTGTTCGACGCCAACTTCGACACGCTGGTGG
CGGCGCTCAAGGGCGTCGGCCACGGCGACATGCCCATCGTCGTCGGCGAGGTCGTCTGGC
CCACCGACGGCGACAAGCACGCCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6016#0      ACGATACACTCCACTCCTACTCTTTTCTTTTCAAGTTTTTGAATGCTCCGCTTGCTCTCG 60
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      CCTCGTCTCCTCCTCGATTCTCGTGTCGCTGCTGCTGCTGCTGCTGCTGTTGAGCAGAGC 120
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      AATCTCTCGCTCGTCTGCTTGGTGTTTGCTCGATATTGAGATCGAATAGGAAGTAGAGTT 180
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      AGAGCGAGTGAAGTGATTGCTCCTTTCATTGATGGCGAGCGAGCTACCTGTGGTTAGTTT 240
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      CCAGCTTTTCTGAGCTGTACTGTTGGTGTGGGTGTGGTCAATCCGTGAAAAATCCCCAAA 300
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      ATCCTGTAAAGTTTCATCCCGAATTCGTTCCAGAAATCCATCCATTTCTTGGATTTGATC 360
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      TTTGTGGAATCGAATCATCAATCCAATCTCGTTGGGTCTTCACGGCTCCGATTGGGGATT 420
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      TAGCGGAGGTGTGTGTTCGAGTGGTAGCAATGGCGAGGTTGGTGGTGGTGATTGTGGCGG 480
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      TGGCCATGGCGGCGTGGTGGGCGGTGGCGGCGGTGGAGGGGTTGGGGATAAACTGGGGGA 540
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      CGCAGGCGACGCACCCGCTGCCGCCCAAGGCGGTGGTGCAGCTGCTCAAGGACAACGGGA 600
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      TCGCCAAGGTGAAGCTGTTCGACACCGACTTCGCCGCCATGAGCGCGCTCGCCGGGAGCG 660
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      GCGTCGAGGTGATGGTCGCCATCCCCAACGAGGACCTCGCCACCATGGCCAGCGACTACG 720
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      GCAACGCCAAGGACTGGGTCAAGAAGAACGTAAAGCGCTTCGACTTCGACGGCGGCGTCA 780
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      CCATCAAGTATGTGGCCGTTGGCAATGAGCCCTTCTTGAAAGCATATAATGGTTCGTTCA 840
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      TCAACATCACATTGCCGGCGCTGCAGAACGTCCAGAACGCGCTGAACGACGCCGGCATTG 900
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      GCGACCGGATCAAGGCCACCGTCCCTCTCAACGCCGACGTGTACGAATCCACGGTGCCGT 960
consensus_6016#1      ------------------------------------------------------------
                                                                                  

consensus_6016#0      CCGCCGGCCGCTTCCGCCCCGAGATCGCCGGCCTGATGACGGGCATCGTCAAGTTCCTGG 1020
consensus_6016#1      ------------------------------------------------TGCAGTTCCTGG 12
                                                                      *  *********

consensus_6016#0      CCAAGAACAACGCGCCCTTCACCGTCAACATCTACCCCTTCCTCAGCCTGTACCTGGACG 1080
consensus_6016#1      CCAACAACAGCGCGCCGTTCACCGTCAACATCTACCCTTTCATCAGCCTCTACCTCAACG 72
                      **** **** ****** ******************** *** ******* *****  ***

consensus_6016#0      AACACTTCCCGATCAACTTCGCCTTCTTCGACGGCGGCTCAACGCCGGTGAACGACGGCG 1140
consensus_6016#1      ACGACTTCCCCGTCGACTTCGCCTTCTTCGACGGCGGCGCGACGCCGGTGGTGGACAACG 132
                      *  *******  ** *********************** * *********   ***  **

consensus_6016#0      GCATCATGTACACCAACGTGTTCGACGCCAACTTCGACACGCTGGTTGCCGCGCTCAAGG 1200
consensus_6016#1      GCATCTCCTACACCAACGTGTTCGACGCCAACTTCGACACGCTGGTGGCGGCGCTCAAGG 192
                      *****   ************************************** ** **********

consensus_6016#0      CCG--------------------------------------------------------- 1203
consensus_6016#1      GCGTCGGCCACGGCGACATGCCCATCGTCGTCGGCGAGGTCGTCTGGCCCACCGACGGCG 252
                       **                                                         

consensus_6016#0      --------------
consensus_6016#1      ACAAGCACGCCACC 266