These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1691 fasta sequence [ACTTGCGGCGGAAGCGCCACTCTCTCCTCTCCTCTCCTCCCTCCCCCCCACCCATCCCCCGCGCCCCACGCGCCCACGTTGGCGGTGCGGTTGATCCGGCAACAGCGGGCGCCTCCTCCTCCTCCGCCCCCAACCACCACCCCCACCCCTGCGGCGCCCATGGGTGTCCGTTCCTGAGCACACCCCACGCTTCCGCTCCGCGCATCTCCGTGGGTGGGTTGGGCATATACCTTGCTTCAGTCGCTTTCCCATCTCTTGCTTCGTCCTGCCTTCTTCTTTCTTCCGTGATCCCGGAACCCGGTGGTCGCCGCCGCCTCGGTGGATCTTGCTCGGCCCTGCGGGGTGCTCAGGATTAACAGTGAGGGGACATTCTGTATTCAGTAATATCAAGTTTCTACAAATAAATAGGTGTAGGAATACCTTTGATGCCCCATTTACACTGTTTGTGCAATGTCTTTATATTATATTTTCTGTGGGAACTTCCATCAACTAAGGAATTCAATAGGAAGCTGTTCTAGTACCGGTTTGCTTAAATGCGGATTAATCTATAGAACTGTACTTCAGAACAGAGGAAATAAAACTCGACCAATCAGTACGACAATACTAGCAAGAAGTACAAGAAAAGAAAGTAAGCAGTCATTCAAAACCAGCCGTCATTTGCATAGTGAATCGGTTGAGTCATCGATTGAAGTGCTCAAACAGTCAGATCTTGAGCATCTTAAATCACTTCAATGCTACAATATTCCACAAAAGGTTTCCGGAGTGAAGACCGATTGGCCTGCAACTATCCTTGTTTTTGATATTGAAACTACAGGCTTCTCACGCCGCTATGAAAGAATCATTGAGTTTGCTGTTCGGGATCTTATGGGAGGAAAGAATAGCACTATCCAGACACTCATAAATCCTGAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGCAAACCTGATATACCAAGATTTCGGGAGTTTATCCCTCTTCTATTACAGTATGTTTTGAGTCGTCAAATGGCTGATAAACCAGTTCTGTGGGTCGCTCATAATGGACGTAGCTTTGATGTACCATTTCTCATGTATGAATTCCAACGGAGTAAAATAGAGATGCCTGGTGACTGGCTATTTGTAGATACACTTCCAATTGCAAGGCAATTGATTGGTTCTGATGGGGAAAAACTGAAATCTGTATCTTTAGACAATCTGAGGGAGCACTACAAGATCCCATTGGCAGGGAGCGCTCATCGAGCAATGCAGGATGTGATCACCCTCTGCTATGTTCTCCAGAAGTTGACCTTCGAGCTGAAACTAACTGTTCCTCAGCTCCTTGAGAGGTCATTCCGGGTTTCCGATCTTTCAATCCCTCGCCCTGGAAAATGACTGCAGTTGCCTCGCCGAAAGGATCACACAGAAACCTGGATTGTTTCATTGTCCTTGTATCCAGTGCTGTTGTTTCAGATCCCAGCTCATATGTTATTCCGACAACAGAATAAGGCAGGCCTGATCGTTACCGTGATATTAATCATTTTTAGTTTAGTACTGATACTTGTTGCCCCTTGAAACATTGATTAGACGTACATTTATTCAAAGTTGTAAAGACCAAAACATGTCCTGGTTTCCAACCTGGAAGAAATGAAACGTTCTTGACTATCTGTAGTCACTGTGGTAAAAAAAGCGGC] [+] EMBL AK101988 [ACTTGCGGCGGAAGCGCCACTCTCTCCTCTCCTCTCCTCCCTCCCCCCCACCCATCCCCCGCGCCCCACGCGCCCACGTTGGCGGTGCGGTTGATCCGGCAACAGCGGGCGCCTCCTCCTCCTCCGCCCCCAACCACCACCCCCACCCCTGCGGCGCCCATGGGTGTCCGTTCCTGAGCACACCCCACGCTTCCGCTCCGCGCATCTCCGTGGGTGGGTTGGGCATATACCTTGCTTCAGTCGCTTTCCCATCTCTTGCTTCGTCCTGCCTTCTTCTTTCTTCCGTGATCCCGGAACCCGGTGGTCGCCGCCGCCTCGGTGGATCTTGCTCGGCCCTGCGGGGTGCTCAGGATTAACAGTGAGGGGACATTCTGTATTCAGTAATATCAAGTTTCTACAAATAAATAGGTGTAGGAATACCTTTGATGCCCCATTTACACTGTTTGTGCAATGTCTTTATATTATATTTTCTGTGGGAACTTCCATCAACTAAGGAATTCAATAGGAAGCTGTTCTAGTACCGGTTTGCTTAAATGCGGATTAATCTATAGAACTGTACTTCAGAACAGAGGAAATAAAACTCGACCAATCAGTACGACAATACTAGCAAGAAGTACAAGAAAAGAAAGTAAGCAGTCATTCAAAACCAGCCGTCATTTGCATAGTGAATCGGTTGAGTCATCGATTGAAGTGCTCAAACAGTCAGATCTTGAGCATCTTAAATCACTTCAATGCTACAATATTCCACAAAAGGTTTCCGGAGTGAAGACCGATTGGCCTGCAACTATCCTTGTTTTTGATATTGAAACTACAGGCTTCTCACGCCGCTATGAAAGAATCATTGAGTTTGCTGTTCGGGATCTTATGGGAGGAAAGAATAGCACTATCCAGACACTCATAAATCCTGAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGCAAACCTGATATACCAAGATTTCGGGAGTTTATCCCTCTTCTATTACAGTATGTTTTGAGTCGTCAAATGGCTGATAAACCAGTTCTGTGGGTCGCTCATAATGGACGTAGCTTTGATGTACCATTTCTCATGTATGAATTCCAACGGAGTAAAATAGAGATGCCTGGTGACTGGCTATTTGTAGATACACTTCCAATTGCAAGGCAATTGATTGGTTCTGATGGGGAAAAACTGAAATCTGTATCTTTAGACAATCTGAGGGAGCACTACAAGATCCCATTGGCAGGGAGCGCTCATCGAGCAATGCAGGATGTGATCACCCTCTGCTATGTTCTCCAGAAGTTGACCTTCGAGCTGAAACTAACTGTTCCTCAGCTCCTTGAGAGGTCATTCCGGGTTTCCGATCTTTCAATCCCTCGCCCTGGAAAATGACTGCAGTTGCCTCGCCGAAAGGATCACACAGAAACCTGGATTGTTTCATTGTCCTTGTATCCAGTGCTGTTGTTTCAGATCCCAGCTCATATGTTATTCCGACAACAGAATAAGGCAGGCCTGATCGTTACCGTGATATTAATCATTTTTAGTTTAGTACTGATACTTGTTGCCCCTTGAAACATTGATTAGACGTACATTTATTCAAAGTTGTAAAGACCAAAACATGTCCTGGTTTCCAACCTGGAAGAAATGAAACGTTCTTGACT ] [-] EMBL AU225242 [ ACACAGAAACCTGGATTGTTTCATTGTCCTTGTATCCAGTGCTGTTGTTTCAGATCCCAGCTCATATGTTATTCCGACAACAGAATAAGGCAGGCCTGATCGTTACCGTGATATTAATCATTTTTAGTTTAGTACTGATACTTGTTGCCCCTTGAAACATTGATTAGACGTACATTTATTCAAAGTTGTAAAGACCAAAACATGTCCTGGTTTCCAACCTGGAAGAAATGAAACGTTCTTGACTATCTGTAGTCACTGTGGTAAAAAAAGCGGC] consensusID : consensus_6020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [GAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGCAAACCTGATATACCAAGATTTCGGGAGTTTATCCCTATTCTATTACAGTATGTTYYTGAGTYGTCAAATGGCTGATAAACCAGTTCTGTGGGKCGCTCATAATGGACGTAGCTTTGATGTACCATTTCTCATGTATGAATTCCAACGRGTGTAAATAGAGATGTCCTBTGTGACYKGCTATWTTGTAGATACACTYTYCCMAWTKCGMAGGGGAATTGAGTTGAGTTCTCKATA] [+] EMBL AA752640 [GAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGCAAACCTGATATACCAAGATTTCGGGAGTTTATCCCTATTCTATTACAGTATGTTYYTGAGTYGTCAAATGGCTGATAAACCAGTTCTGTGGGKCGCTCATAATGGACGTAGCTTTGATGTACCATTTCTCATGTATGAATTCCAACGRGTGTAAATAGAGATGTCCTBTGTGACYKGCTATWTTGTAGATACACTYTYCCMAWTKCGMAGGGGAATTGAGTTGAGTTCTCKATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6020#0 ACTTGCGGCGGAAGCGCCACTCTCTCCTCTCCTCTCCTCCCTCCCCCCCACCCATCCCCC 60 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 GCGCCCCACGCGCCCACGTTGGCGGTGCGGTTGATCCGGCAACAGCGGGCGCCTCCTCCT 120 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 CCTCCGCCCCCAACCACCACCCCCACCCCTGCGGCGCCCATGGGTGTCCGTTCCTGAGCA 180 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 CACCCCACGCTTCCGCTCCGCGCATCTCCGTGGGTGGGTTGGGCATATACCTTGCTTCAG 240 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 TCGCTTTCCCATCTCTTGCTTCGTCCTGCCTTCTTCTTTCTTCCGTGATCCCGGAACCCG 300 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 GTGGTCGCCGCCGCCTCGGTGGATCTTGCTCGGCCCTGCGGGGTGCTCAGGATTAACAGT 360 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 GAGGGGACATTCTGTATTCAGTAATATCAAGTTTCTACAAATAAATAGGTGTAGGAATAC 420 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 CTTTGATGCCCCATTTACACTGTTTGTGCAATGTCTTTATATTATATTTTCTGTGGGAAC 480 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 TTCCATCAACTAAGGAATTCAATAGGAAGCTGTTCTAGTACCGGTTTGCTTAAATGCGGA 540 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 TTAATCTATAGAACTGTACTTCAGAACAGAGGAAATAAAACTCGACCAATCAGTACGACA 600 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 ATACTAGCAAGAAGTACAAGAAAAGAAAGTAAGCAGTCATTCAAAACCAGCCGTCATTTG 660 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 CATAGTGAATCGGTTGAGTCATCGATTGAAGTGCTCAAACAGTCAGATCTTGAGCATCTT 720 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 AAATCACTTCAATGCTACAATATTCCACAAAAGGTTTCCGGAGTGAAGACCGATTGGCCT 780 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 GCAACTATCCTTGTTTTTGATATTGAAACTACAGGCTTCTCACGCCGCTATGAAAGAATC 840 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 ATTGAGTTTGCTGTTCGGGATCTTATGGGAGGAAAGAATAGCACTATCCAGACACTCATA 900 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 AATCCTGAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGC 960 consensus_6020#1 ------GAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGC 54 ****************************************************** consensus_6020#0 AAACCTGATATACCAAGATTTCGGGAGTTTATCCCTCTTCTATTACAGTATGTTTT-GAG 1019 consensus_6020#1 AAACCTGATATACCAAGATTTCGGGAGTTTATCCCTATTCTATTACAGTATGTTYYTGAG 114 ************************************ ***************** *** consensus_6020#0 TCGTCAAATGGCTGATAAACCAGTTCTGTGGGTCGCTCATAATGGACGTAGCTTTGATGT 1079 consensus_6020#1 TYGTCAAATGGCTGATAAACCAGTTCTGTGGGKCGCTCATAATGGACGTAGCTTTGATGT 174 * ****************************** *************************** consensus_6020#0 ACCATTTCTCATGTATGAATTCCAACGGAGTAAAATAGAGATGCC--TGGTGACTGGCTA 1137 consensus_6020#1 ACCATTTCTCATGTATGAATTCCAACGRGTGTAAATAGAGATGTCCTBTGTGACYKGCTA 234 *************************** *********** * ***** **** consensus_6020#0 TTT-GTAGATACACTT--CCAATTGCAA--GGCAATTGATTGGTTCTGATGGGGAAAAAC 1192 consensus_6020#1 TWTTGTAGATACACTYTYCCMAWTKCGMAGGGGAATTGAGTTGAGTTCTCKATA------ 288 * * *********** ** * * * ** ****** * * * consensus_6020#0 TGAAATCTGTATCTTTAGACAATCTGAGGGAGCACTACAAGATCCCATTGGCAGGGAGCG 1252 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 CTCATCGAGCAATGCAGGATGTGATCACCCTCTGCTATGTTCTCCAGAAGTTGACCTTCG 1312 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 AGCTGAAACTAACTGTTCCTCAGCTCCTTGAGAGGTCATTCCGGGTTTCCGATCTTTCAA 1372 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 TCCCTCGCCCTGGAAAATGACTGCAGTTGCCTCGCCGAAAGGATCACACAGAAACCTGGA 1432 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 TTGTTTCATTGTCCTTGTATCCAGTGCTGTTGTTTCAGATCCCAGCTCATATGTTATTCC 1492 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 GACAACAGAATAAGGCAGGCCTGATCGTTACCGTGATATTAATCATTTTTAGTTTAGTAC 1552 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 TGATACTTGTTGCCCCTTGAAACATTGATTAGACGTACATTTATTCAAAGTTGTAAAGAC 1612 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 CAAAACATGTCCTGGTTTCCAACCTGGAAGAAATGAAACGTTCTTGACTATCTGTAGTCA 1672 consensus_6020#1 ------------------------------------------------------------ consensus_6020#0 CTGTGGTAAAAAAAGCGGC 1691 consensus_6020#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||