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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2033 fasta sequence
[TACATCCGCGCGCCGCCGACTCCTCCTCTTGCCCCCCCTCTCGCCGCGCCGCCGCCGCCTCTGCCCGTCAGACACACCTCCCCCCTCCTCGAGGACAAGGGACTCTCCTCTCTCGCCGGCGGCGGCCGTCGGCGACGACGTACTAGTACTCCACCCCCACTCAGCTGTACTGACGCGGCTTGTGTGGGTCCGAGCTTGGATTGGTCGATTCCTTCTGTTCTCGTAACCATGGCCAGTGCCAAGCCCGCCGCTGAACAGAAGGCTATGGAAGGGGGCGAGCAGGAGGCTCTGGATGAAATGGAGAAGAAGGTGCACAAGTACTCGCGGGGGAAGGCTGCTTACCTTGGGACTCTTCGCGACAAGAAATTGAAAGGGCAGCTCGCCGCAAGAGAGAAGCTCTATGGACACTCCGCCAAAGCCGCCGTTCAGACCGAGAAGTGGCTCTTGCCTACCGAGGGCGGCTATTTAGAGCCTGATGATGATGGTCTGGAGAAGACGTACAGATATCAGCAAACTTCGCTCCGGGAGGACGTGGATCTTTTGAGTTCAAGAAAGCCATTTGATATGATCTTACCTTTACTTGGCCCTTATACTCTAGGATACACGGGAAATGGCCGGTATATGGTAGTAGGTGGACGAAAAGGTCATGTCGCTATGATGGATATGTTGAATTTGGAACTCGTCAAGGAGTTTCAGGTGAGGGAAACTGTGCGCGATGTGGCATTCTTACATAATGAGCAACTCTATGCTGTCGCCCAGAAAAAGTACCCCTACATATATAATCGACATGGCACAGAAATTCACTGCTTAAAAGAACATGGTAAATCGTTGAAGCTCCAATTTCTGGAAAAGCACTTTCTCTTGTCATCAATAAACAGCTTTGGGCAGCTCCATTACCAAGATATAAGCACTGGTGAGATGGTTGCAAATTACAGGACAGGTCTGGGACGTACTGATGTTATGCGGCTAAATCCTTACAATGCTGTTATTGGCCTTGGGCATGCTGGTGGCAAAGTTACCATGTGGAAGCCAACCAGTGTGAAACCCCTTGTCACAATGCTGTGCCATAGTGGCCCTGTGACAGCCATTGCATTTGACAGGGGTGGTCATCTTATGGCAACAGCAGGTGTTGACAGGAAGGTCAAGATTTGGGATCTCAGGAAGTATGAGGTTATAAATTCTTATGCTGCACGTGCACAATCCCTGGATTTCAGCCAGAAAGGTTTGTTGGCCTGCAGCAATGGATCTCAAGTAGAGATATTCAGGGATACCGGGGGACAGGATTATAAAATTTATATGAAACATAGAATGGTAAAGGGATACCAGATTGGGAAGGTTTTGTTCCGTCCTTACGAGGATGTTCTGGGGATTGGTCACTCCATGGGCCTTTCTGCCATTCTTGTTCCTGGATCTGGTGAGCCAAACTTTGATACCTTTGTTGACAACCCCGTTGAGACTTCCAAGCAGAGAAGGGAGAAGGAGGTGCAATCCCTGCTTAACAAGCTCCAGCCAGAGACGATAATGCTTAATCCGAACATGATAGCTACCGTAAGACCTTCAAGGAAGAAAGAGAAGAAGACCAAGAAGGAGATTGAGGAGGAGATGGAAGACGCCGTAGAGGCTGCCAAGAGCATCGAGTTCAAGAAGAAGACCAAGGGTAGGAGCAAAGCCAGCAAGCGGGCCAAGAAGAGGGAGGAAGAAGTTTTGAAAGCCAAAAGGCCGTTCCTGGAGCAACACAAGGAAAACGATGGGAGGCCTGACAAGAAACAGCGGGTCAGCGAGGAGATTGAGCTGCCAAAGGCCTTGCAGCGGTTCGCAAAGAGTAGGCAGTGACAATGGAGCACAGAATTTTCTTTTTCTTTTTGTTTGCTGCAACCTCATATTTATCACTAGTGTGCATTGTATCGTGTAGCTGGCAAATGTCATATCTGCTTCCTTGTGAACCATAGGCTTTTGCACATGAGGCAATGGTGCACAGAAGTAAGCACCCAAATTTTGTTCTGAATCTTTTGTGATATGTTGGTCAAATGTGC]
[+] EMBL AK111760 [TACATCCGCGCGCCGCCGACTCCTCCTCTTGCCCCCCCTCTCGCCGCGCCGCCGCCGCCTCTGCCCGTCAGACACACCTCCCCCCTCCTCGAGGACAAGGGACTCTCCTCTCTCGCCGGCGGCGGCCGTCGGCGACGACGTACTAGTACTCCACCCCCACTCAGCTGTACTGACGCGGCTTGTGTGGGTCCGAGCTTGGATTGGTCGATTCCTTCTGTTCTCGTAACCATGGCCAGTGCCAAGCCCGCCGCTGAACAGAAGGCTATGGAAGGGGGCGAGCAGGAGGCTCTGGATGAAATGGAGAAGAAGGTGCACAAGTACTCGCGGGGGAAGGCTGCTTACCTTGGGACTCTTCGCGACAAGAAATTGAAAGGGCAGCTCGCCGCAAGAGAGAAGCTCTATGGACACTCCGCCAAAGCCGCCGTTCAGACCGAGAAGTGGCTCTTGCCTACCGAGGGCGGCTATTTAGAGCCTGATGATGATGGTCTGGAGAAGACGTACAGATATCAGCAAACTTCGCTCCGGGAGGACGTGGATCTTTTGAGTTCAAGAAAGCCATTTGATATGATCTTACCTTTACTTGGCCCTTATACTCTAGGATACACGGGAAATGGCCGGTATATGGTAGTAGGTGGACGAAAAGGTCATGTCGCTATGATGGATATGTTGAATTTGGAACTCGTCAAGGAGTTTCAGGTGAGGGAAACTGTGCGCGATGTGGCATTCTTACATAATGAGCAACTCTATGCTGTCGCCCAGAAAAAGTACCCCTACATATATAATCGACATGGCACAGAAATTCACTGCTTAAAAGAACATGGTAAATCGTTGAAGCTCCAATTTCTGGAAAAGCACTTTCTCTTGTCATCAATAAACAGCTTTGGGCAGCTCCATTACCAAGATATAAGCACTGGTGAGATGGTTGCAAATTACAGGACAGGTCTGGGACGTACTGATGTTATGCGGCTAAATCCTTACAATGCTGTTATTGGCCTTGGGCATGCTGGTGGCAAAGTTACCATGTGGAAGCCAACCAGTGTGAAACCCCTTGTCACAATGCTGTGCCATAGTGGCCCTGTGACAGCCATTGCATTTGACAGGGGTGGTCATCTTATGGCAACAGCAGGTGTTGACAGGAAGGTCAAGATTTGGGATCTCAGGAAGTATGAGGTTATAAATTCTTATGCTGCACGTGCACAATCCCTGGATTTCAGCCAGAAAGGTTTGTTGGCCTGCAGCAATGGATCTCAAGTAGAGATATTCAGGGATACCGGGGGACAGGATTATAAAATTTATATGAAACATAGAATGGTAAAGGGATACCAGATTGGGAAGGTTTTGTTCCGTCCTTACGAGGATGTTCTGGGGATTGGTCACTCCATGGGCCTTTCTGCCATTCTTGTTCCTGGATCTGGTGAGCCAAACTTTGATACCTTTGTTGACAACCCCGTTGAGACTTCCAAGCAGAGAAGGGAGAAGGAGGTGCAATCCCTGCTTAACAAGCTCCAGCCAGAGACGATAATGCTTAATCCGAACATGATAGCTACCGTAAGACCTTCAAGGAAGAAAGAGAAGAAGACCAAGAAGGAGATTGAGGAGGAGATGGAAGACGCCGTAGAGGCTGCCAAGAGCATCGAGTTCAAGAAGAAGACCAAGGGTAGGAGCAAAGCCAGCAAGCGGGCCAAGAAGAGGGAGGAAGAAGTTTTGAAAGCCAAAAGGCCGTTCCTGGAGCAACACAAGGAAAACGATGGGAGGCCTGACAAGAAACAGCGGGTCAGCGAGGAGATTGAGCTGCCAAAGGCCTTGCAGCGGTTCGCAAAGAGTAGGCAGTGACAATGGAGCACAGAATTTTCTTTTTCTTTTTGTTTGCTGCAACCTCATATTTATCACTAGTGTGCATTGTATCGTGTAGCTGGCAAATGTCATATCTGCTTCCTTGTGAACCATAGGCTTTTGCACATGAGGCAATGGTGCACAGAAGTAAGCACCCAAATTTTGTTCTGAATCTTTTGTGATATGTTGGTCAAATGTGC]
consensusID : consensus_6021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 513 fasta sequence
[CTTGAAATGCCCGAGTACCATGATAGCTACCGTAAGACCTTCAAGGAAGAAAGAGAAGAAGACCAAGAAGGAGATTGAGGAGGAGATGGAAGACGCCGTAGAGGCTGCCA-AGAGCATCGAGTTC-AAGAAGAAGACCAAGGGTAGGAGCA-AAGCC-AGCAAGC-GGGCCAAGAA-GAGGGAGGAAGAAGTTTTGAAAGCCAAAAGGCCGTTCCTGGAGCAACACAAGGAAAACGATGGGAGGCCTGACA-AGAAACA-GCGGGTCAGCGAGGAGATTGAGCTGCCACAAGGCCTTGCAGCGGTTCGCCAAAGAGTAGGCAGTGACA-ATGGAGCACAGAATTTTCTTTTTATTTTTGTTTGCTGC-AACCTCATATTTATCACTAGTGTGCATTGTATCGTGTAGCTGGCAAATGTCATATCTGCTTCCTTGTGAACCATAGGCTTTTGCACATGAGGCAATGGTGCACAGAAGTAAGCACCCAAATCCTCTCNCTTCTGAATCTTTTGTGAAAAAAAAAA]
[+] EMBL BQ906418 [CTTGAAATGCCCGAGTACCATGATAGCTACCGTAAGACCTTCAAGGAAGAAAGAGAAGAAGACCAAGAAGGAGATTGAGGAGGAGATGGAAGACGCCGTAGAGGCTGCCA AGAGCATCGAGTTC AAGAAGAAGACCAAGGGTAGGAGCA AAGCC AGCAAGC GGGCCAAGAA GAGGGAGGAAGAAGTTTTGAAAGCCAAAAGGCCGTTCCTGGAGCAACACAAGGAAAACGATGGGAGGCCTGACA AGAAACA GCGGGTCAGCGAGGAGATTGAGCTGCCACAAGGCCTTGCAGCGGTTCGCCAAAGAGTAGGCAGTGACA ATGGAGCACAGAATTTTCTTTTTATTTTTGTTTGCTGC AACCTCATATTTATCACTAGTGTGCATTGTATCGTGTAGCTGGCAAATGTCATATCTGCTTCCTTGTGAACCATAGGCTTTTGCACATGAGGCAATGGTGCACAGAAGTAAGCACCCAAATCCTCTCNCTTCTGAATCTTTTGTGAAAAAAAAAA]
[+] EMBL BI813615 [ GGAGTTTGAGGAGGAGATGGAAGACTCCGTAGAGTCTGCCATAGAGCATCGAGTTCAAAGAAGAAGACCAAGGGTAGGAGCATAAGCCAAGCAAGCAGGGCCAAGAATGAGGGAGGAAGAAGTTTTGAAAGCC AAAGGCCGTTCCTGGAGCAACACAAGGAAAACGATGGGAGGCCTGACATAGAAACATGCGGGTCAGCGAGGAGATTGAGCTGCCACAAGGCCTTGCAGCGGTTCG CAAAGAGTAGGCAGTGACATATGGAGCACAGAATTTTCTTTTTATTTTTGTTTGCTGCAAACCTCATATTTATCACTAGTGTGCATTGTATCGTGTAGCTGGCAAATGTCATATCTGCTTCCTTGTGAACCATAGGCTTTTGCACATGA GCAATGGTGCACAGAAGTAAGCACCC AAT TTT GTTCTGAATCTTTTGTGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6021#0 TACATCCGCGCGCCGCCGACTCCTCCTCTTGCCCCCCCTCTCGCCGCGCCGCCGCCGCCT 60
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 CTGCCCGTCAGACACACCTCCCCCCTCCTCGAGGACAAGGGACTCTCCTCTCTCGCCGGC 120
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 GGCGGCCGTCGGCGACGACGTACTAGTACTCCACCCCCACTCAGCTGTACTGACGCGGCT 180
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 TGTGTGGGTCCGAGCTTGGATTGGTCGATTCCTTCTGTTCTCGTAACCATGGCCAGTGCC 240
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 AAGCCCGCCGCTGAACAGAAGGCTATGGAAGGGGGCGAGCAGGAGGCTCTGGATGAAATG 300
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 GAGAAGAAGGTGCACAAGTACTCGCGGGGGAAGGCTGCTTACCTTGGGACTCTTCGCGAC 360
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 AAGAAATTGAAAGGGCAGCTCGCCGCAAGAGAGAAGCTCTATGGACACTCCGCCAAAGCC 420
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 GCCGTTCAGACCGAGAAGTGGCTCTTGCCTACCGAGGGCGGCTATTTAGAGCCTGATGAT 480
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 GATGGTCTGGAGAAGACGTACAGATATCAGCAAACTTCGCTCCGGGAGGACGTGGATCTT 540
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 TTGAGTTCAAGAAAGCCATTTGATATGATCTTACCTTTACTTGGCCCTTATACTCTAGGA 600
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 TACACGGGAAATGGCCGGTATATGGTAGTAGGTGGACGAAAAGGTCATGTCGCTATGATG 660
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 GATATGTTGAATTTGGAACTCGTCAAGGAGTTTCAGGTGAGGGAAACTGTGCGCGATGTG 720
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 GCATTCTTACATAATGAGCAACTCTATGCTGTCGCCCAGAAAAAGTACCCCTACATATAT 780
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 AATCGACATGGCACAGAAATTCACTGCTTAAAAGAACATGGTAAATCGTTGAAGCTCCAA 840
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 TTTCTGGAAAAGCACTTTCTCTTGTCATCAATAAACAGCTTTGGGCAGCTCCATTACCAA 900
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 GATATAAGCACTGGTGAGATGGTTGCAAATTACAGGACAGGTCTGGGACGTACTGATGTT 960
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 ATGCGGCTAAATCCTTACAATGCTGTTATTGGCCTTGGGCATGCTGGTGGCAAAGTTACC 1020
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 ATGTGGAAGCCAACCAGTGTGAAACCCCTTGTCACAATGCTGTGCCATAGTGGCCCTGTG 1080
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 ACAGCCATTGCATTTGACAGGGGTGGTCATCTTATGGCAACAGCAGGTGTTGACAGGAAG 1140
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 GTCAAGATTTGGGATCTCAGGAAGTATGAGGTTATAAATTCTTATGCTGCACGTGCACAA 1200
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 TCCCTGGATTTCAGCCAGAAAGGTTTGTTGGCCTGCAGCAATGGATCTCAAGTAGAGATA 1260
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 TTCAGGGATACCGGGGGACAGGATTATAAAATTTATATGAAACATAGAATGGTAAAGGGA 1320
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 TACCAGATTGGGAAGGTTTTGTTCCGTCCTTACGAGGATGTTCTGGGGATTGGTCACTCC 1380
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 ATGGGCCTTTCTGCCATTCTTGTTCCTGGATCTGGTGAGCCAAACTTTGATACCTTTGTT 1440
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 GACAACCCCGTTGAGACTTCCAAGCAGAGAAGGGAGAAGGAGGTGCAATCCCTGCTTAAC 1500
consensus_6021#1 ------------------------------------------------------------
consensus_6021#0 AAGCTCCAGCCAGAGACGATAATGCTTAATCCGAACATGATAGCTACCGTAAGACCTTCA 1560
consensus_6021#1 ---------------CTTGAAATGCCCGAGT--ACCATGATAGCTACCGTAAGACCTTCA 43
***** * * *************************
consensus_6021#0 AGGAAGAAAGAGAAGAAGACCAAGAAGGAGATTGAGGAGGAGATGGAAGACGCCGTAGAG 1620
consensus_6021#1 AGGAAGAAAGAGAAGAAGACCAAGAAGGAGATTGAGGAGGAGATGGAAGACGCCGTAGAG 103
************************************************************
consensus_6021#0 GCTGCCAAGAGCATCGAGTTCAAGAAGAAGACCAAGGGTAGGAGCAAAGCCAGCAAGCGG 1680
consensus_6021#1 GCTGCCAAGAGCATCGAGTTCAAGAAGAAGACCAAGGGTAGGAGCAAAGCCAGCAAGCGG 163
************************************************************
consensus_6021#0 GCCAAGAAGAGGGAGGAAGAAGTTTTGAAAGCCAAAAGGCCGTTCCTGGAGCAACACAAG 1740
consensus_6021#1 GCCAAGAAGAGGGAGGAAGAAGTTTTGAAAGCCAAAAGGCCGTTCCTGGAGCAACACAAG 223
************************************************************
consensus_6021#0 GAAAACGATGGGAGGCCTGACAAGAAACAGCGGGTCAGCGAGGAGATTGAGCTGCCA-AA 1799
consensus_6021#1 GAAAACGATGGGAGGCCTGACAAGAAACAGCGGGTCAGCGAGGAGATTGAGCTGCCACAA 283
********************************************************* **
consensus_6021#0 GGCCTTGCAGCGGTTCGC-AAAGAGTAGGCAGTGACAATGGAGCACAGAATTTTCTTTTT 1858
consensus_6021#1 GGCCTTGCAGCGGTTCGCCAAAGAGTAGGCAGTGACAATGGAGCACAGAATTTTCTTTTT 343
****************** *****************************************
consensus_6021#0 CTTTTTGTTTGCTGCAACCTCATATTTATCACTAGTGTGCATTGTATCGTGTAGCTGGCA 1918
consensus_6021#1 ATTTTTGTTTGCTGCAACCTCATATTTATCACTAGTGTGCATTGTATCGTGTAGCTGGCA 403
***********************************************************
consensus_6021#0 AATGTCATATCTGCTTCCTTGTGAACCATAGGCTTTTGCACATGAGGCAATGGTGCACAG 1978
consensus_6021#1 AATGTCATATCTGCTTCCTTGTGAACCATAGGCTTTTGCACATGAGGCAATGGTGCACAG 463
************************************************************
consensus_6021#0 AAGTAAGCACCCAAAT----TTTGTTCTGAATCTTTTGTGATATGTTGGTCAAATGTGC 2033
consensus_6021#1 AAGTAAGCACCCAAATCCTCTCNCTTCTGAATCTTTTGTGAAAAAAAAAA--------- 513
**************** * ***************** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||