|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2274 fasta sequence
[AGCTTCCTCCACTAGTCTACCGCCGCTGCCTCCTCCTCGTCTCCTCTCCTCTCACCATCTCACCATCTCACTACCCACACTGTTCCATGGGGGCCTCAAATTGGAGGCGGCGCCGGCGGCGAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACATGCTGTGGCCGGCTCGCCGCCCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAGGGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAACTGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGCCTTAGTTGTTTCTTCTCCTCGCTCGAGGCTGCAAGAAAATCAAGAACCCGATCGCCACGTCGAGATCAACCTCTCTCCAGGCCGGCAATGGACGGGCGCGCCGGTTGCTGCGTCCGCTTCATCGGCTGCTGCCTCGCCGCCGACGGTGACGCCGCCCTGAGCCAGAGCGCGGCCGCGCTGCACAGGATGGCGTCGGCGTTCTTGGACGCTCACGGCGAGCCCTTGGTACTCCTCGACCACCGGGTGCTCTGCTCCCATGGCGTCGCCACCGTGGGGCACAGCCAGGCCTTCGCCGCGGCGATGAGGCAGCGCAGAGAGGAGATTCCCCCTGCCCCATTCAGGATTCTGCTGCAGGAAGAATATGTCGGGTGGGCTGAAGTGGCGGCATGCGCCAATGGGAACAAGATTGTGGACAAGAAGTCCTGGAGAGCTTCGGTCAGGAACATGCTCGATGCTGTGTACAGGATGATATGTCAGGTCCTTGCCTCTGCTGTGAGATCTGTTTGGGCTATTGGCACCTATATGCTTCCTCTATCAGCTGCAGAGTTTTTCAGAAGGAGACTACCCGCATCAGCTGTGCCAGAAAAAATTAGCTGGCGGGGTGTCATTAGCACTTTCAGATTTCAAATCTTCCCTGATACCTGCGCCATAGTAGCATGCTCAGTCTGTATCGAGGCACAACACAGGCTCGAGTTTGAGCGCCTACACGGGCAAGGCACATTCATCCTCGAATTGCCTGATTCCACCAGGAAGCTGAGAAGATTCTGCCTGGAGAGAAAAGCTTGGTTTAAGGGTAAAGGGGCTCATATCGATAGCCTCCTGTCTCTGATCCAGGAGACTGGTGGAGTGCCCGCAATAAGTACAACGAACACAAGAAGCAGCCTCCTTCTGCCCCTTCACAGCTATGACTACTTCAGCCTCCGGGGGTGCTGGACAAACCTGACACCCCAGCAGGCTGCACAGCTGATCTTCACCGGTGGTCCCTGCATTGGCAGTCTCTGGGTTGATGGATCCTACACCAGCAAGCACCACTACAGCGATGACAACGATGACGATGAGGAGGACATGCTAGTGTACCGTGGCTGTGATCCCAAGAAGAAGATACACCGGGATAAGGAGACAGGCTTACATGCCGTCGTGTGTTACGCGTACCTCTTCATTGGGAAGGAGCTGCACATCCGTGTCCAGGACAATATGCCTATCTGCAGTCCCCACAACTGGATCCTTTTCCAGGCGTTTGACATGTTTTACACCCTACGAGTCATGCCCTTAGATGCTTCAAGACTGTATGATCCCTTGTAGAAGATGACAGTGCCGCCGAAGATTTCACAGAAGATAGGCAAAGACCGAGCATGGCTCCATGCCAACCTTCGTCGGCTACATGAAGCGATGATGATCCAGAAAGGGAAAGAGAAGGTCTGCTGAAGTTAGGAGCTTGCTGGTGAGCCGGTTTTATCTCTCTTGAAGGCTGTGTTCGTTCATTCTGCGCCGCTGCTCTCTTCGTCAGTATTAGCTGACTGATTGATTAGTTGTAATGCTGAATGGCGAGATGGTGTCCCCAGCATTTTGTAGAAAGACCTGATCCATCCTGTTTACGCCTTCAAGTAAACCTGGACGCTAAGCCTTTTGTCCAGAATGCATGACTGTGTGCAGACACACAATGGATCGATTTTCTCCTTTTTGTGTGTGTGTGTCGTTTCAGTCAAATTTTGGGCGTCAGGGCTGTTTGAGATTTGTTATGTGGTTTTGAGGCTTGCCTGTTTTGATTGCTACTTTGAGTTCCACGAAGTGATGAAGTAGTACATATTTATTTTATTGTGTTCTTTTTTTGCCTCTTCTGTCATTTCAACTTTATCTATGGTGATCATCTGACCAAGTACTTCTCTAGTTGTCTGGTCAGTTAATTTTTTTATTCCTGAAATGTGCTT]
[+] EMBL AK101269 [AGCTTCCTCCACTAGTCTACCGCCGCTGCCTCCTCCTCGTCTCCTCTCCTCTCACCATCTCACCATCTCACTACCCACACTGTTCCATGGGGGCCTCAAATTGGAGGCGGCGCCGGCGGCGAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACATGCTGTGGCCGGCTCGCCGCCCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAGGGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAACTGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGCCTTAGTTGTTTCTTCTCCTCGCTCGAGGCTGCAAGAAAATCAAGAACCCGATCGCCACGTCGAGATCAACCTCTCTCCAGGCCGGCAATGGACGGGCGCGCCGGTTGCTGCGTCCGCTTCATCGGCTGCTGCCTCGCCGCCGACGGTGACGCCGCCCTGAGCCAGAGCGCGGCCGCGCTGCACAGGATGGCGTCGGCGTTCTTGGACGCTCACGGCGAGCCCTTGGTACTCCTCGACCACCGGGTGCTCTGCTCCCATGGCGTCGCCACCGTGGGGCACAGCCAGGCCTTCGCCGCGGCGATGAGGCAGCGCAGAGAGGAGATTCCCCCTGCCCCATTCAGGATTCTGCTGCAGGAAGAATATGTCGGGTGGGCTGAAGTGGCGGCATGCGCCAATGGGAACAAGATTGTGGACAAGAAGTCCTGGAGAGCTTCGGTCAGGAACATGCTCGATGCTGTGTACAGGATGATATGTCAGGTCCTTGCCTCTGCTGTGAGATCTGTTTGGGCTATTGGCACCTATATGCTTCCTCTATCAGCTGCAGAGTTTTTCAGAAGGAGACTACCCGCATCAGCTGTGCCAGAAAAAATTAGCTGGCGGGGTGTCATTAGCACTTTCAGATTTCAAATCTTCCCTGATACCTGCGCCATAGTAGCATGCTCAGTCTGTATCGAGGCACAACACAGGCTCGAGTTTGAGCGCCTACACGGGCAAGGCACATTCATCCTCGAATTGCCTGATTCCACCAGGAAGCTGAGAAGATTCTGCCTGGAGAGAAAAGCTTGGTTTAAGGGTAAAGGGGCTCATATCGATAGCCTCCTGTCTCTGATCCAGGAGACTGGTGGAGTGCCCGCAATAAGTACAACGAACACAAGAAGCAGCCTCCTTCTGCCCCTTCACAGCTATGACTACTTCAGCCTCCGGGGGTGCTGGACAAACCTGACACCCCAGCAGGCTGCACAGCTGATCTTCACCGGTGGTCCCTGCATTGGCAGTCTCTGGGTTGATGGATCCTACACCAGCAAGCACCACTACAGCGATGACAACGATGACGATGAGGAGGACATGCTAGTGTACCGTGGCTGTGATCCCAAGAAGAAGATACACCGGGATAAGGAGACAGGCTTACATGCCGTCGTGTGTTACGCGTACCTCTTCATTGGGAAGGAGCTGCACATCCGTGTCCAGGACAATATGCCTATCTGCAGTCCCCACAACTGGATCCTTTTCCAGGCGTTTGACATGTTTTACACCCTACGAGTCATGCCCTTAGATGCTTCAAGACTGTATGATCCCTTGTAGAAGATGACAGTGCCGCCGAAGATTTCACAGAAGATAGGCAAAGACCGAGCATGGCTCCATGCCAACCTTCGTCGGCTACATGAAGCGATGATGATCCAGAAAGGGAAAGAGAAGGTCTGCTGAAGTTAGGAGCTTGCTGGTGAGCCGGTTTTATCTCTCTTGAAGGCTGTGTTCGTTCATTCTGCGCCGCTGCTCTCTTCGTCAGTATTAGCTGACTGATTGATTAGTTGTAATGCTGAATGGCGAGATGGTGTCCCCAGCATTTTGTAGAAAGACCTGATCCATCCTGTTTACGCCTTCAAGTAAACCTGGACGCTAAGCCTTTTGTCCAGAATGCATGACTGTGTGCAGACACACAATGGATCGATTTTCTCCTTTTTGTGTGTGTGTGTCGTTTCAGTCAAATTTTGGGCGTCAGGGCTGTTTGAGATTTGTTATGTGGTTTTGAGGCTTGCCTGTTTTGATTGCTACTTTGAGTTCCACGAAGTGATGAAGTAGTACATATTTATTTTATTGTGTTCTTTTTTTGCCTCTTCTGTCATTTCAACTTTATCTATGGTGATCATCTGACCAAGTACTTCTCTAGTTGTCTGGTCAGTTAATTTTTTTATTCCTGAAATGTGCTT]
[+] EMBL OSR24101A [ gtAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACATGCTGTGGCCGGCTCGCCGCCCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAGGGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAACTGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGCttg ]
consensusID : consensus_6022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[GAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACATGCTGTGGCCGGCTCGCCGCNCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAGGGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAACTGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGNCTTGTCAGTGACAGCCTCCNCCCCTACTCTTCAAATTCTCCTGGGCTTCGCGCTCTCGGTCTCGGGTGGTAACGACC]
[+] EMBL OSR22581A [GAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACATGCTGTGGCCGGCTCGCCGCNCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAGGGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAACTGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGNCTTGTCAGTGACAGCCTCCNCCCCTACTCTTCAAATTCTCCTGGGCTTCGCGCTCTCGGTCTCGGGTGGTAACGACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6022#0 AGCTTCCTCCACTAGTCTACCGCCGCTGCCTCCTCCTCGTCTCCTCTCCTCTCACCATCT 60
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 CACCATCTCACTACCCACACTGTTCCATGGGGGCCTCAAATTGGAGGCGGCGCCGGCGGC 120
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 GAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACAT 180
consensus_6022#1 GAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACAT 60
************************************************************
consensus_6022#0 GCTGTGGCCGGCTCGCCGCCCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAG 240
consensus_6022#1 GCTGTGGCCGGCTCGCCGCNCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAG 120
******************* ****************************************
consensus_6022#0 GGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAAC 300
consensus_6022#1 GGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAAC 180
************************************************************
consensus_6022#0 TGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGCCTTAGTTGTTTCTT 360
consensus_6022#1 TGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGNCTTGTCAGTGACAG 240
********************************************* *** ** *
consensus_6022#0 CTCCTCGCTCGAGGCTGCAAGAAAATCAAGAACCCGATCGCCACGTCGAGATCAACCTCT 420
consensus_6022#1 CCTCCNCCCCTACTCTTCAAATTCTCCTGGGCTTCGCGCTCTCGGTCTCGGGTGGTAACG 300
* * * * * ** *** * * ** * * *** * *
consensus_6022#0 CTCCAGGCCGGCAATGGACGGGCGCGCCGGTTGCTGCGTCCGCTTCATCGGCTGCTGCCT 480
consensus_6022#1 ACC--------------------------------------------------------- 303
*
consensus_6022#0 CGCCGCCGACGGTGACGCCGCCCTGAGCCAGAGCGCGGCCGCGCTGCACAGGATGGCGTC 540
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 GGCGTTCTTGGACGCTCACGGCGAGCCCTTGGTACTCCTCGACCACCGGGTGCTCTGCTC 600
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 CCATGGCGTCGCCACCGTGGGGCACAGCCAGGCCTTCGCCGCGGCGATGAGGCAGCGCAG 660
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 AGAGGAGATTCCCCCTGCCCCATTCAGGATTCTGCTGCAGGAAGAATATGTCGGGTGGGC 720
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 TGAAGTGGCGGCATGCGCCAATGGGAACAAGATTGTGGACAAGAAGTCCTGGAGAGCTTC 780
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 GGTCAGGAACATGCTCGATGCTGTGTACAGGATGATATGTCAGGTCCTTGCCTCTGCTGT 840
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 GAGATCTGTTTGGGCTATTGGCACCTATATGCTTCCTCTATCAGCTGCAGAGTTTTTCAG 900
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 AAGGAGACTACCCGCATCAGCTGTGCCAGAAAAAATTAGCTGGCGGGGTGTCATTAGCAC 960
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 TTTCAGATTTCAAATCTTCCCTGATACCTGCGCCATAGTAGCATGCTCAGTCTGTATCGA 1020
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 GGCACAACACAGGCTCGAGTTTGAGCGCCTACACGGGCAAGGCACATTCATCCTCGAATT 1080
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 GCCTGATTCCACCAGGAAGCTGAGAAGATTCTGCCTGGAGAGAAAAGCTTGGTTTAAGGG 1140
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 TAAAGGGGCTCATATCGATAGCCTCCTGTCTCTGATCCAGGAGACTGGTGGAGTGCCCGC 1200
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 AATAAGTACAACGAACACAAGAAGCAGCCTCCTTCTGCCCCTTCACAGCTATGACTACTT 1260
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 CAGCCTCCGGGGGTGCTGGACAAACCTGACACCCCAGCAGGCTGCACAGCTGATCTTCAC 1320
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 CGGTGGTCCCTGCATTGGCAGTCTCTGGGTTGATGGATCCTACACCAGCAAGCACCACTA 1380
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 CAGCGATGACAACGATGACGATGAGGAGGACATGCTAGTGTACCGTGGCTGTGATCCCAA 1440
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 GAAGAAGATACACCGGGATAAGGAGACAGGCTTACATGCCGTCGTGTGTTACGCGTACCT 1500
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 CTTCATTGGGAAGGAGCTGCACATCCGTGTCCAGGACAATATGCCTATCTGCAGTCCCCA 1560
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 CAACTGGATCCTTTTCCAGGCGTTTGACATGTTTTACACCCTACGAGTCATGCCCTTAGA 1620
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 TGCTTCAAGACTGTATGATCCCTTGTAGAAGATGACAGTGCCGCCGAAGATTTCACAGAA 1680
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 GATAGGCAAAGACCGAGCATGGCTCCATGCCAACCTTCGTCGGCTACATGAAGCGATGAT 1740
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 GATCCAGAAAGGGAAAGAGAAGGTCTGCTGAAGTTAGGAGCTTGCTGGTGAGCCGGTTTT 1800
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 ATCTCTCTTGAAGGCTGTGTTCGTTCATTCTGCGCCGCTGCTCTCTTCGTCAGTATTAGC 1860
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 TGACTGATTGATTAGTTGTAATGCTGAATGGCGAGATGGTGTCCCCAGCATTTTGTAGAA 1920
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 AGACCTGATCCATCCTGTTTACGCCTTCAAGTAAACCTGGACGCTAAGCCTTTTGTCCAG 1980
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 AATGCATGACTGTGTGCAGACACACAATGGATCGATTTTCTCCTTTTTGTGTGTGTGTGT 2040
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 CGTTTCAGTCAAATTTTGGGCGTCAGGGCTGTTTGAGATTTGTTATGTGGTTTTGAGGCT 2100
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 TGCCTGTTTTGATTGCTACTTTGAGTTCCACGAAGTGATGAAGTAGTACATATTTATTTT 2160
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 ATTGTGTTCTTTTTTTGCCTCTTCTGTCATTTCAACTTTATCTATGGTGATCATCTGACC 2220
consensus_6022#1 ------------------------------------------------------------
consensus_6022#0 AAGTACTTCTCTAGTTGTCTGGTCAGTTAATTTTTTTATTCCTGAAATGTGCTT 2274
consensus_6022#1 ------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||