These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1201 fasta sequence [CCCACCGGGTGGCGGGGCCGCAGAATCCGGCAAAGCGGCGGCGACGGCGAGGGGATCGGGCGCGGACGCGGAGAGGAGAGAGACAGCGATGGCCGCCGCCCGTGGTTGCCTCGCCTCTCGAGCCTACATAAGGGGGCGCGCGGCGCATCTCCGGGCTTCGGCGCGTCGGATTGGGAGGTCGGGATTGGGAGGAGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGGGTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGTGGAGGAGCTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGGCGACGACGCCAACCCCCACCACTTCGCCGCGCCCGCCACTATTGAAAACATTGTGGAACGTTATGAGCACTCTCAAGCAGCACAAAAAGGAGTACATGGCAGGTGCATTCTGCAAAAGAGGAAGAGCAAGGATTTTCAAGTTCTCAAGGAAACAATAGATAAAGGACCAATCAATGATGACATGCGACCTATTGATGAAAAAGACATATCCACATTAAACATGGACCAGATTAGCCAAATTGAAATATTATTGGAAGATGAACTGAGGTGGACAAGGGCAAGAAAGGTGGTGGCAGATAGAATTGCCAGGTTGCAGAACAAGGTACAGAAGAACCCGGCGACTGCTGAGACAGAAAGCAACTCCCCTGAGATGCCCTCTGATCATGAGAAGAAACAGGTAGCAGGAGGAAGCCAGCAGAGCGCCGAGGAGGAGGAGGAGGAGATGGAGGTGGTGCTCAGGCACCGCCTGAGCCTGGGCACCGGCGACCGTGACGATGGTGGCGGTGGCGCGGCGGAGCAACGGCACCGGACGACGCCGCCGCCGGCGGTCGACCTCAACGTGCCGTGCCGGGACGCGGGTCAGCTGCAGTAGACGTGGACAAAACACCATTTGTTGCAGCACAGCAATCCGAGCCCATAACACAGCGTAGTAGTAACAGTTTACAGCCGTAAACAATGTTTCGAAGTTATACTGTTGCTGGGAAGTTACTGTGCTAATAATTTTACTACTGTAGCGGTTCATGCCGAGGGACGCTGTGTGTGTCCGTACGTATCCGTATATATATTAATAAGGCTGGCTGTGCCTGCAAATTACTGCTAATGTGAAGGGCATGCGAAAGAAGACGCAT] [+] EMBL CB645178 [CCCACCGGGTGGCGGGGCCGCAGAATCCGGCAAAGCGGCGGCGACGGCGAGGGGATCGGGCGCGGACGCGGAGAGGAGAGAGACAGCGATGGCCGCCGCCCGTGGTTGCCTCGCCTCTCGAGCCTACATAAGGGGGCGCGCGGCGCATCTCCGGGCTTCGGCGCGTCGGATTGGGAGGTCGGGATTGGGAGGAGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGGGTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGTGGAGGAGCTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGGCGACGACGCCAACCCCCACCACTTCGCCGCGCCCGCCACTATTGAAAACATTGTGGAACGTTATGAGCACTCTCAAGCAGCACAAAAAGGAGTACATGGCAGGTGCATTCTGCAAAAGAGGAAGAGCAAGGATTTTCAAGTTCTCAAGGAAACAATAGATAAAGGACCAATCAATGATGACATGCGACCTATTGATGAAAAAGACATATCCACATTAAACATGGACCAGATTAGCCAAATTGAAATATTATTGGAAGATGAACTGAGGTGGACAAGGGCAAGAAAGGTGGTGGCAGATAGAATTGCCAGGTTGCAGAACAAGGTACAGAAGAACC ] [-] EMBL CB645179 [ GAGCAAGGATTTTCAAGTTCTCAGGGAACCAATAGATAAAGGCCCAATCAATGATGACATGCGGCCTATTGATGAAAAAGACATATCCCCATTAAACATGGACCAGATTAGCCAAATTGAAATATTATTGGAAGATGAACTGAGGTGGACAAGGGCAAGAAAGGTGGTGGCAGATAGAATTGCCAGGTTGCAGAAAAAGGTACAGAAGAAACCGGCGACTGCTGAGACAGAAAGCAACTCCCCTGAGATGCCCTCTGATCATGAGAAGAAACAGGTAGCAGGAGGAAGCCAGCAGAGCGCCGAGGAGGAGGAGGAGGAGATGGAGGTGGTGCTCAGGCACCGCCTGAGCCTGGGCACCGGCGACCGTGACGATGGTGGCGGTGGCGCGGCGGAGCAACGGCACCGGACGACGCCGCCGCCGGCGGTCGACCTCAACGTGCCGTGCCGGGACGCGGGTCAGCTGCAGTAGACGTGGACAAAACACCATTTGTTGCAGCACAGCAATCCGAGCCCATAACACAGCGTAGTAGTAACAGTTTACAGCCGTAAACAATGTTTCGAAGTTATACTGTTGCTGGGAAGTTACTGTGCTAATAATTTTACTACTGTAGCGGTTCATGCCGAGGGACGCTGTGTGTGTCCGTACGTATCCGTATATATATTAATAAGGCTGGCTGTGCCTGCAAATTACTGCTAATGTGAAGGGCATGCGAAAGAAGACGCAT] consensusID : consensus_6027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1060 fasta sequence [GGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGGGTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGCGGAGGAGCTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGACGACGACCGCCTCCACCATTTCGCCGCGCCCGCCACTATAGAAAACATTGTGGAACGTTATGAGAATTCTCTAACAGCACAAAAGGGAGTACATGGCAGGCGCACTCCGGAAAAGAGAGACACTCATTGGTGAAAATTTTCCTGCCGGTGCTGATGATAATTATTTTACCATACCAAGGGCAAGGATTTTCATGTTCCCAAGGAAACAACAGATAAAGGGTCGAACGATGATGACATGCGATCTATTGATGAAACAGACATATCCACATTGAACATGGACCAGCTTAGCCAAATTGAAAGATTACTGGAAGATGAACTAAGGTGGACAAGGGCAAGAAAGGTGGTGGTGGATAGAAGTGCCAGATTACAAAAAAAGGTGCAGGGGAAAGCGGCGATTGTTGAGGTTGAGAGGGGCTCCATGGAGATTCCCATAGAATCTGGGCAGGAGAAGGAACAGATAGGAGGGGAGGCTGTGGAGGAGCAACGGAGCCGGACTACGCCGTTGGACCTCAACATGCCTTGCTGGGACGCAGGTCCTCTGCAGTAAACGTAGATAACATTATCTTTGCACAGCAATCTGAGTCTGTCTAACGTTAGTCGCTACTACTGTCCCCGGTACTAACAGTGTCGTAAGTTACTGTTGCTGGGAAACTACTACTACGCTTTGCTAATCTTTTTTTACTGTAGCCGTTCATATCCAGGATACTGTGCCGTAACTGGAGCACACCAGATTCAAATCAAATGTACTGTGACACCATTGTATTTTAAAATGTGTTTTTCTCCTACTTCCTACTAGTTCTAGTTCATGTTCGGTGGAAAATTGTAAACCAAATAAACCGGCATCGGTATTGGTCGATGTGTACCCGTGGGCTCTGTAATAAGACTGTCCGTGCCTGCAA] [+] EMBL AK111796 [GGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGGGTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGCGGAGGAGCTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGACGACGACCGCCTCCACCATTTCGCCGCGCCCGCCACTATAGAAAACATTGTGGAACGTTATGAGAATTCTCTAACAGCACAAAAGGGAGTACATGGCAGGCGCACTCCGGAAAAGAGAGACACTCATTGGTGAAAATTTTCCTGCCGGTGCTGATGATAATTATTTTACCATACCAAGGGCAAGGATTTTCATGTTCCCAAGGAAACAACAGATAAAGGGTCGAACGATGATGACATGCGATCTATTGATGAAACAGACATATCCACATTGAACATGGACCAGCTTAGCCAAATTGAAAGATTACTGGAAGATGAACTAAGGTGGACAAGGGCAAGAAAGGTGGTGGTGGATAGAAGTGCCAGATTACAAAAAAAGGTGCAGGGGAAAGCGGCGATTGTTGAGGTTGAGAGGGGCTCCATGGAGATTCCCATAGAATCTGGGCAGGAGAAGGAACAGATAGGAGGGGAGGCTGTGGAGGAGCAACGGAGCCGGACTACGCCGTTGGACCTCAACATGCCTTGCTGGGACGCAGGTCCTCTGCAGTAAACGTAGATAACATTATCTTTGCACAGCAATCTGAGTCTGTCTAACGTTAGTCGCTACTACTGTCCCCGGTACTAACAGTGTCGTAAGTTACTGTTGCTGGGAAACTACTACTACGCTTTGCTAATCTTTTTTTACTGTAGCCGTTCATATCCAGGATACTGTGCCGTAACTGGAGCACACCAGATTCAAATCAAATGTACTGTGACACCATTGTATTTTAAAATGTGTTTTTCTCCTACTTCCTACTAGTTCTAGTTCATGTTCGGTGGAAAATTGTAAACCAAATAAACCGGCATCGGTATTGGTCGATGTGTACCCGTGGGCTCTGTAATAAGACTGTCCGTGCCTGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6027#0 CCCACCGGGTGGCGGGGCCGCAGAATCCGGCAAAGCGGCGGCGACGGCGAGGGGATCGGG 60 consensus_6027#1 ------------------------------------------------------------ consensus_6027#0 CGCGGACGCGGAGAGGAGAGAGACAGCGATGGCCGCCGCCCGTGGTTGCCTCGCCTCTCG 120 consensus_6027#1 ------------------------------------------------------------ consensus_6027#0 AGCCTACATAAGGGGGCGCGCGGCGCATCTCCGGGCTTCGGCGCGTCGGATTGGGAGGTC 180 consensus_6027#1 ------------------------------------------------------------ consensus_6027#0 GGGATTGGGAGGAGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGG 240 consensus_6027#1 ------------GGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGG 48 *********************************************** consensus_6027#0 GTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGTGGAGGAG 300 consensus_6027#1 GTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGCGGAGGAG 108 **************************************************** ******* consensus_6027#0 CTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGGCGACGAC 360 consensus_6027#1 CTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGACGACGAC 168 **************************************************** ******* consensus_6027#0 GCCAACCCCCACCACTTCGCCGCGCCCGCCACTATTGAAAACATTGTGGAACGTTATGAG 420 consensus_6027#1 C---GCCTCCACCATTTCGCCGCGCCCGCCACTATAGAAAACATTGTGGAACGTTATGAG 225 ** ****** ******************** ************************ consensus_6027#0 CACTCTCAAGCAGCACAAAAAGGAGTACATGGCAGGTGCATTCTGCAAAAGAGG------ 474 consensus_6027#1 AATTCTCTAACAGCACAAAAGGGAGTACATGGCAGGCGCACTCCGGAAAAGAGAGACACT 285 * **** * ********** *************** *** ** * ******* consensus_6027#0 ---------------------------------------------------AAGAGCAAG 483 consensus_6027#1 CATTGGTGAAAATTTTCCTGCCGGTGCTGATGATAATTATTTTACCATACCAAGGGCAAG 345 *** ***** consensus_6027#0 GATTTTCAAGTTCTCAAGGAAACAATAGATAAAGGACCAATCAATGATGACATGCGACCT 543 consensus_6027#1 GATTTTCATGTTCCCAAGGAAACAACAGATAAAGGGTCGAACGATGATGACATGCGATCT 405 ******** **** *********** ********* * * * ************** ** consensus_6027#0 ATTGATGAAAAAGACATATCCACATTAAACATGGACCAGATTAGCCAAATTGAAATATTA 603 consensus_6027#1 ATTGATGAAACAGACATATCCACATTGAACATGGACCAGCTTAGCCAAATTGAAAGATTA 465 ********** *************** ************ *************** **** consensus_6027#0 TTGGAAGATGAACTGAGGTGGACAAGGGCAAGAAAGGTGGTGGCAGATAGAATTGCCAGG 663 consensus_6027#1 CTGGAAGATGAACTAAGGTGGACAAGGGCAAGAAAGGTGGTGGTGGATAGAAGTGCCAGA 525 ************* **************************** ******* ****** consensus_6027#0 TTGCAGAACAAGGTACAGAAGAACCCGGCGACTGCTGAGACAGAAAGCAACTCCCCTGAG 723 consensus_6027#1 TTACAAAAAAAGGTGCAGGGGAAAGCGGCGATTGTTGAGGTTGAGAGGGGCTCCATGGAG 585 ** ** ** ***** *** *** ****** ** **** ** ** **** *** consensus_6027#0 ATGCCC------TCTGATCATGAGAAGAAACAGGTAGCAGGAGGAAGCCAGCAGAGCGCC 777 consensus_6027#1 ATTCCCATAGAATCTGGGCAGGAGAAGGAACAGATAGGAGG-GGAGGCTGTGGAGGAGCA 644 ** *** **** ** ****** ***** *** *** *** ** * ** consensus_6027#0 GAGGAGGAGGAGGAGGAGATGGAGGTGGTGCTCAGGCACCGCCTGAGCCTGGGCACCGGC 837 consensus_6027#1 ACGGAGCCGGACTACGCCGTTGGACC--TCAACATGCCTTGCTGGGACGCAGGTCCT--C 700 **** *** * * * * * ** ** ** * * ** * * consensus_6027#0 GACCGTGA-CGATGGTGGCGGTGGCGCGGCGGAGCAAC--GGCACCGGACGACGCCGCCG 894 consensus_6027#1 TGCAGTAAACGTAGATAACATTATCTTTGCACAGCAATCTGAGTCTGTCTAACGTTAGTC 760 * ** * ** * * * * * ** ***** * * * *** consensus_6027#0 CCGGCGGTCGACCTCAACGT--GCCGTGCCGGGACGCGGGTCAGCTGCAGTAG-ACGTGG 951 consensus_6027#1 GCTACTACTGTCCCCGGTACTAACAGTGTCGTAAGTTACTGTTGCTGGGAAACTACTACT 820 * * * ** * * *** ** * **** * ** consensus_6027#0 ACAAAACACCA--TTTGTTGCAGCACAGCAATCCGAGCCCATAACACAGCGTAGTAGTAA 1009 consensus_6027#1 ACGCTTTGCTAATCTTTTTTTACTGTAGCCGTTCATATCCAGGATACTGTGCCGTAACTG 880 ** * * ** ** * *** * * *** * ** * * *** consensus_6027#0 CAGTTTAC-AGCCGTAAAC--AATGTTTCGAAGTTATACTGTTGCTGGGAAGTTACTGTG 1066 consensus_6027#1 GAGCACACCAGATTCAAATCAAATGTACTGTGACACCATTGTATTTTAAAATGTGTTTTT 940 ** ** ** *** ***** * * *** * ** * * * consensus_6027#0 CTAATAATTTTACTACT-GTAGCGGTTCATGCCGAGGGACGCTGTGTGTGTCCGTACGTA 1125 consensus_6027#1 CTCCTA--CTTCCTACTAGTTCTAGTTCATGTTCGGTGGAAAATTGTAAA-CCAAATAAA 997 ** ** ** ***** ** ******* * * *** ** * * consensus_6027#0 TCCGTATATATATTAATAAGGCTGGCTGTGCCTGCAAATTACTGCTAATGTGAAGGGCAT 1185 consensus_6027#1 CCGGCATCGGTATTGGTCGATGTGTACCCGTGGGCTCTGTAATAAGACTGTCC-GTGCCT 1056 * * ** **** * ** * ** ** * * *** * ** * consensus_6027#0 GCGAAAGAAGACGCAT 1201 consensus_6027#1 GCAA------------ 1060 ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||