cluster # 604

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Oryza sativa
cluster # 604 cluster # 604 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_604#0 length = 627 sequences # 1

consensus_604#1 length = 258 sequences # 1

consensusID : consensus_604#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [TTTTGAGTTGGAGGCATCTGGACTCTAGAGTTTGGAACAAACAGATGCGAACAAAACATTTGGTTCTCTCACAAAAAACCGCATAGAATTCACAGCATATAACGTACACAGCAGTAAAGCAAGCCACAGGCGGCACAGTGAAACACATGTTGTTAGGCCAAAGAGAGATGCCAAAGAGAGCATCTGTGCGGTGAAATCTTGCTTAGGGCACCCACAATGGTTATTTATAGGCTCTCTACAAGAGATCCATGTCAGAATATTTTTCTACTTGAAAGATATTAAATAAAGAGAGAGAGCAAAGCTATCTACTAACTTAGAGATAGTCTATAGAGAAAAACGAGACAATGTATGAGAGAGCTATAGATACCAATATAGACATACTATTAAGGTGGTTTCCTATTAATCGAGTCTATTGCTGAGATATACATGTTTTATAGAGAGCACCTTATTTTACCATTACGGGTGCTCTTATTGCATCTGTTTGGTGTGAACTTGCACGCGTACGTGACGTGCTGTCCACATTAATACATGCATCGTTTCTCAAGAAAAAGCATGCACCATGCTCAATCTGTGAGCTAGCATTAACTCCATGATGAGGATATCGTCTGCACGTCATAAACCTTTCGT]

[+] EMBL CA765301             [TTTTGAGTTGGAGGCATCTGGACTCTAGAGTTTGGAACAAACAGATGCGAACAAAACATTTGGTTCTCTCACAAAAAACCGCATAGAATTCACAGCATATAACGTACACAGCAGTAAAGCAAGCCACAGGCGGCACAGTGAAACACATGTTGTTAGGCCAAAGAGAGATGCCAAAGAGAGCATCTGTGCGGTGAAATCTTGCTTAGGGCACCCACAATGGTTATTTATAGGCTCTCTACAAGAGATCCATGTCAGAATATTTTTCTACTTGAAAGATATTAAATAAAGAGAGAGAGCAAAGCTATCTACTAACTTAGAGATAGTCTATAGAGAAAAACGAGACAATGTATGAGAGAGCTATAGATACCAATATAGACATACTATTAAGGTGGTTTCCTATTAATCGAGTCTATTGCTGAGATATACATGTTTTATAGAGAGCACCTTATTTTACCATTACGGGTGCTCTTATTGCATCTGTTTGGTGTGAACTTGCACGCGTACGTGACGTGCTGTCCACATTAATACATGCATCGTTTCTCAAGAAAAAGCATGCACCATGCTCAATCTGTGAGCTAGCATTAACTCCATGATGAGGATATCGTCTGCACGTCATAAACCTTTCGT]




>consensus_604#0
TTTTGAGTTGGAGGCATCTGGACTCTAGAGTTTGGAACAAACAGATGCGAACAAAACATT
TGGTTCTCTCACAAAAAACCGCATAGAATTCACAGCATATAACGTACACAGCAGTAAAGC
AAGCCACAGGCGGCACAGTGAAACACATGTTGTTAGGCCAAAGAGAGATGCCAAAGAGAG
CATCTGTGCGGTGAAATCTTGCTTAGGGCACCCACAATGGTTATTTATAGGCTCTCTACA
AGAGATCCATGTCAGAATATTTTTCTACTTGAAAGATATTAAATAAAGAGAGAGAGCAAA
GCTATCTACTAACTTAGAGATAGTCTATAGAGAAAAACGAGACAATGTATGAGAGAGCTA
TAGATACCAATATAGACATACTATTAAGGTGGTTTCCTATTAATCGAGTCTATTGCTGAG
ATATACATGTTTTATAGAGAGCACCTTATTTTACCATTACGGGTGCTCTTATTGCATCTG
TTTGGTGTGAACTTGCACGCGTACGTGACGTGCTGTCCACATTAATACATGCATCGTTTC
TCAAGAAAAAGCATGCACCATGCTCAATCTGTGAGCTAGCATTAACTCCATGATGAGGAT
ATCGTCTGCACGTCATAAACCTTTCGT

consensusID : consensus_604#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [TTTTTTATCTCACAAAAAACCGGATAGAATTCAGGGGGATATAACGTACACAGCAGTAAAGCAAGCCACAGGCGGCACAGTGAAACACATGTGTTAGGCCAAAGGAGCAGATGCCAAAGCAGAGCCATCTGTGCGGGTGCAACATCTTGGCTTAGGGCACCCACAAGTGGTTATTCTATAGGCTCTCTACGAAGCAGCATCCATGTCAGCAATATTTTTCTACTTGCACAAGCATATTAAATCAAAGAGAGAGAGCAA]

[-] EMBL BI803779             [TTTTTTATCTCACAAAAAACCGGATAGAATTCAGGGGGATATAACGTACACAGCAGTAAAGCAAGCCACAGGCGGCACAGTGAAACACATGTGTTAGGCCAAAGGAGCAGATGCCAAAGCAGAGCCATCTGTGCGGGTGCAACATCTTGGCTTAGGGCACCCACAAGTGGTTATTCTATAGGCTCTCTACGAAGCAGCATCCATGTCAGCAATATTTTTCTACTTGCACAAGCATATTAAATCAAAGAGAGAGAGCAA]




>consensus_604#1
TTTTTTATCTCACAAAAAACCGGATAGAATTCAGGGGGATATAACGTACACAGCAGTAAA
GCAAGCCACAGGCGGCACAGTGAAACACATGTGTTAGGCCAAAGGAGCAGATGCCAAAGC
AGAGCCATCTGTGCGGGTGCAACATCTTGGCTTAGGGCACCCACAAGTGGTTATTCTATA
GGCTCTCTACGAAGCAGCATCCATGTCAGCAATATTTTTCTACTTGCACAAGCATATTAA
ATCAAAGAGAGAGAGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_604#0      TTTTGAGTTGGAGGCATCTGGACTCTAGAGTTTGGAACAAACAGATGCGAACAAAACATT 60
consensus_604#1      -----------------------------------------------------------T 1
                                                                                *

consensus_604#0      TGGTTCTCTCACAAAAAACCGCATAGAATTCACAGC-ATATAACGTACACAGCAGTAAAG 119
consensus_604#1      TTTTTATCTCACAAAAAACCGGATAGAATTCAGGGGGATATAACGTACACAGCAGTAAAG 61
                     *  ** *************** **********  *  ***********************

consensus_604#0      CAAGCCACAGGCGGCACAGTGAAACACATGTTGTTAGGCCAAAGAG--AGATGCCAAAG- 176
consensus_604#1      CAAGCCACAGGCGGCACAGTGAAACACATGT-GTTAGGCCAAAGGAGCAGATGCCAAAGC 120
                     ******************************* ************    *********** 

consensus_604#0      AGAGC-ATCTGTGCGG---TGAAATCTTG-CTTAGGGCACCCACAA-TGGTTATT-TATA 229
consensus_604#1      AGAGCCATCTGTGCGGGTGCAACATCTTGGCTTAGGGCACCCACAAGTGGTTATTCTATA 180
                     ***** **********     * ****** **************** ******** ****

consensus_604#0      GGCTCTCTACAAGAGA---TCCATGTCAG-AATATTTTTCTACTTG---AAAGATATTAA 282
consensus_604#1      GGCTCTCTACGAAGCAGCATCCATGTCAGCAATATTTTTCTACTTGCACAAGCATATTAA 240
                     ********** *   *   ********** ****************   **  *******

consensus_604#0      AT-AAAGAGAGAGAGCAAAGCTATCTACTAACTTAGAGATAGTCTATAGAGAAAAACGAG 341
consensus_604#1      ATCAAAGAGAGAGAGCAA------------------------------------------ 258
                     ** ***************                                          

consensus_604#0      ACAATGTATGAGAGAGCTATAGATACCAATATAGACATACTATTAAGGTGGTTTCCTATT 401
consensus_604#1      ------------------------------------------------------------
                                                                                 

consensus_604#0      AATCGAGTCTATTGCTGAGATATACATGTTTTATAGAGAGCACCTTATTTTACCATTACG 461
consensus_604#1      ------------------------------------------------------------
                                                                                 

consensus_604#0      GGTGCTCTTATTGCATCTGTTTGGTGTGAACTTGCACGCGTACGTGACGTGCTGTCCACA 521
consensus_604#1      ------------------------------------------------------------
                                                                                 

consensus_604#0      TTAATACATGCATCGTTTCTCAAGAAAAAGCATGCACCATGCTCAATCTGTGAGCTAGCA 581
consensus_604#1      ------------------------------------------------------------
                                                                                 

consensus_604#0      TTAACTCCATGATGAGGATATCGTCTGCACGTCATAAACCTTTCGT 627
consensus_604#1      ----------------------------------------------