These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1427 fasta sequence [AGTAACACACACTCTCTCCCTTCCGATCGTCGCCGGCGGCCATCGGCGGCGCTAGGGTTCATCGGGTTACGCAGGACAAACTGCGTAGGCGAGGCGCGGGGGAATCTCGCGATGGAGGCGGCCGTCGCTTCCACCGGCTCCGGCCTGCGCTGCTCGCCCAATCCGATGCCTAAGCAGCAGCACGAGCGGCGAAGTGCTCGGGTGGGCTTCGTCTCCCAGCCGCGACCTCGCGCTGTCCGCTGCGAGCGGTCGCCCCATCCGGATGCTCGAGCCTACGCGGCGGTGGCGGTGGGGGTGGTGGCGAAGGGGCGTGAGGTTGGGGGCGTCGGGGTGGAGAGAAGGAGGCTCGCGGTGTTCGTTTCCGGTGGGGGATCCAACTTCCGGGCGATCCACGACGCCGCTCTGGGTGGGGAGGTGAATGGTGATGTGGTTGCGTTGGTTACCGATAAACCAGGCTGTGGAGGAGCGGAGCATGCGAGGGGTAATGGGATACCGGTGGTTGTGTTCCCGAAGTCGAAGTCTGCTCCAGAGGGGGTTTCTATTGATGAGTTGTTGAATGCTCTGAGGGAACTCAGGGTAGACTTCATTCTACTTGCTGGTTACCTGAAACTTATACCTGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATTCACCCTTCACTACTCCCAGCATTTGGAGGCAAAGGTTATTATGGTTTGAAGGTGCATAAAGCAGTCATCGCATCAGGGGCCAGGTATTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCTAGCCAATGATACTCCAGAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCTGCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTTCCACTTATTAGAAGTCATACAAACCCTGACGAGTACACTTAACTCATAGTACTACCTCAAGGATTGCTGCGCAGCATGCACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTCCCAAGGCATGAAGGTCACTCGTACTAATTGAGATAAATAACTTGTCTGGTGCTGTTACTGAAACAAAATATCTTGTGCCGTTCAACTCACCGCTTGTTGTGTGACTTTGCTCCAACAATGACATGCGCATAGGCCGATACTTAGAAACCTCAGTGTTTGCTGGTGTGACTTGCGGAAGCATACTGGTTGCTGCATGCACCAAGTTTTTTTTTTTTTTGTGTGTGTGACAGAGCGGGGTGGGGGGGGGGGGAGGGGGTCCATTGTACCCTTTAGTCTTGGAATTGTTGTAATCGGCTGAAGTCAAGTCGATCAAAGAGGGAGTAAAAACTGGTCAGATCACACAGGTTTTCAATGTGTAATCTGATTAC] [+] EMBL AK102314 [AGTAACACACACTCTCTCCCTTCCGATCGTCGCCGGCGGCCATCGGCGGCGCTAGGGTTCATCGGGTTACGCAGGACAAACTGCGTAGGCGAGGCGCGGGGGAATCTCGCGATGGAGGCGGCCGTCGCTTCCACCGGCTCCGGCCTGCGCTGCTCGCCCAATCCGATGCCTAAGCAGCAGCACGAGCGGCGAAGTGCTCGGGTGGGCTTCGTCTCCCAGCCGCGACCTCGCGCTGTCCGCTGCGAGCGGTCGCCCCATCCGGATGCTCGAGCCTACGCGGCGGTGGCGGTGGGGGTGGTGGCGAAGGGGCGTGAGGTTGGGGGCGTCGGGGTGGAGAGAAGGAGGCTCGCGGTGTTCGTTTCCGGTGGGGGATCCAACTTCCGGGCGATCCACGACGCCGCTCTGGGTGGGGAGGTGAATGGTGATGTGGTTGCGTTGGTTACCGATAAACCAGGCTGTGGAGGAGCGGAGCATGCGAGGGGTAATGGGATACCGGTGGTTGTGTTCCCGAAGTCGAAGTCTGCTCCAGAGGGGGTTTCTATTGATGAGTTGTTGAATGCTCTGAGGGAACTCAGGGTAGACTTCATTCTACTTGCTGGTTACCTGAAACTTATACCTGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATTCACCCTTCACTACTCCCAGCATTTGGAGGCAAAGGTTATTATGGTTTGAAGGTGCATAAAGCAGTCATCGCATCAGGGGCCAGGTATTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCTAGCCAATGATACTCCAGAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCTGCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTTCCACTTATTAGAAGTCATACAAACCCTGACGAGTACACTTAACTCATAGTACTACCTCAAGGATTGCTGCGCAGCATGCACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTCCCAAGGCATGAAGGTCACTCGTACTAATTGAGATAAATAACTTGTCTGGTGCTGTTACTGAAACAAAATATCTTGTGCCGTTCAACTCACCGCTTGTTGTGTGACTTTGCTCCAACAATGACATGCGCATAGGCCGATACTTAGAAACCTCAGTGTTTGCTGGTGTGACTTGCGGAAGCATACTGGTTGCTGCATGCACCAAGTTTTTTTTTTTTTTGTGTGTGTGACAGAGCGGGGTGGGGGGGGGGGGAGGGGGTCCATTGTACCCTTTAGTCTTGGAATTGTTGTAATCGGCTGAAGTCAAGTCGATCAAAGAGGGAGTAAAAACTGGTCAGATCACACAGGTTTTCAATGTGTAATCTGATTAC] consensusID : consensus_6040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence [GAAACTTATACCGGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATTCACCCTTCACTACTCCCAGCATTTGGAGGAAAAGGTTATTATGGTTTGAAGGTGCATAAAGCAGTCATCGCATCAGGGGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGTACTCTAGCCCAAAGGGTTGTGCCTGTGCTAGCCAATGATACTCCAGAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCTGCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTCCCACTTATTAGAAGGCAGACAAACCCTGACGAGTACACTTAACTCATGGTACTACCTCAAGGATTCCTGCGCAGCGTGCACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTTTCCCAAGGCGTGAAGGTCACTCGTACTAATTGAGATAAATAACATGTCTGGTGCTGNTACTGAAACAAAATATCTTGTGCCGTTCAATTCACTCCTTGTTGTGTGACTTTGCTCCAACAGTGACATGTGCCATAGGCCGATACTTAGAAACCTCAGTGNTTGGTGGTANGACTTGGGAAGCATACTGTTTGCTGCATGCACCAAGGTTTTTTTTCTCTTTTTCTTTTTCCTTTTTTTTGGGGGGGGGGGGGCCATTATACNTTANNCTTGGNAATGGTGGAATTGGCTGAAGCCAAGTCGATCAGAGAGGGAGTAAAAACTGGTCAAAATCCCACAGGNTTTCAAAGGGGAANCCGGATTACCA] [+] EMBL CA765840 [GAAACTTATACCGGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATTCACCCTTCACTACTCCCAGCATTTGGAGGAAAAGGTTATTATGGTTTGAAGGTGCATAAAGCAGTCATCGCATCAGGGGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGTACTCTAGCCCAAAGGGTTGTGCCTGTGCTAGCCAATGATACTCCAGAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCTGCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTCCCACTTATTAGAAGGCAGACAAACCCTGACGAGTACACTTAACTCATGGTACTACCTCAAGGATTCCTGCGCAGCGTGCACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTTTCCCAAGGCGTGAAGGTCACTCGTACTAATTGAGATAAATAACATGTCTGGTGCTGNTACTGAAACAAAATATCTTGTGCCGTTCAATTCACTCCTTGTTGTGTGACTTTGCTCCAACAGTGACATGTGCCATAGGCCGATACTTAGAAACCTCAGTGNTTGGTGGTANGACTTGGGAAGCATACTGTTTGCTGCATGCACCAAGGTTTTTTTTCTCTTTTTCTTTTTCCTTTTTTTTGGGGGGGGGGGGGCCATTATACNTTANNCTTGGNAATGGTGGAATTGGCTGAAGCCAAGTCGATCAGAGAGGGAGTAAAAACTGGTCAAAATCCCACAGGNTTTCAAAGGGGAANCCGGATTACCA] consensusID : consensus_6040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [TCGCATCAGGAGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCAAGCCAATGATACTCCAGAGCAATTGGCTACAAGAGTCCTTCATGAGGANNATCAGGTTTATGTTGAGGCAGTTACTGCCCTATGTGAGGACCGAATTGTGTGGAGAGAAGATGGTATCCCACTTATTAGAAGCCAGACAAATCCCGATGAGTACACTTAACTCATTGGTATTATCTCAAGGATTGCTGCGCAGCGCAGTGCTTACGTAATGAGGCTTCTAGAATGCCTGCATTATTTTTCCCAAAGCATAAAGGCCACTCATACTAATTGAGATAAATAACATGTCTGGTGTTGTTACTGAAACAAAATATCTTGTTCCGTTTAATG] [+] EMBL AU183153 [TCGCATCAGGAGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCAAGCCAATGATACTCCAGAGCAATTGGCTACAAGAGTCCTTCATGAGGANNATCAGGTTTATGTTGAGGCAGTTACTGCCCTATGTGAGGACCGAATTGTGTGGAGAGAAGATGGTATCCCACTTATTAGAAGCCAGACAAATCCCGATGAGTACACTTAACTCATTGGTATTATCTCAAGGATTGCTGCGCAGCGCAGTGCTTACGTAATGAGGCTTCTAGAATGCCTGCATTATTTTTCCCAAAGCATAAAGGCCACTCATACTAATTGAGATAAATAACATGTCTGGTGTTGTTACTGAAACAAAATATCTTGTTCCGTTTAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 AGTAACACACACTCTCTCCCTTCCGATCGTCGCCGGCGGCCATCGGCGGCGCTAGGGTTC 60 consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 ATCGGGTTACGCAGGACAAACTGCGTAGGCGAGGCGCGGGGGAATCTCGCGATGGAGGCG 120 consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 GCCGTCGCTTCCACCGGCTCCGGCCTGCGCTGCTCGCCCAATCCGATGCCTAAGCAGCAG 180 consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 CACGAGCGGCGAAGTGCTCGGGTGGGCTTCGTCTCCCAGCCGCGACCTCGCGCTGTCCGC 240 consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 TGCGAGCGGTCGCCCCATCCGGATGCTCGAGCCTACGCGGCGGTGGCGGTGGGGGTGGTG 300 consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 GCGAAGGGGCGTGAGGTTGGGGGCGTCGGGGTGGAGAGAAGGAGGCTCGCGGTGTTCGTT 360 consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 TCCGGTGGGGGATCCAACTTCCGGGCGATCCACGACGCCGCTCTGGGTGGGGAGGTGAAT 420 consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 GGTGATGTGGTTGCGTTGGTTACCGATAAACCAGGCTGTGGAGGAGCGGAGCATGCGAGG 480 consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 GGTAATGGGATACCGGTGGTTGTGTTCCCGAAGTCGAAGTCTGCTCCAGAGGGGGTTTCT 540 consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 ATTGATGAGTTGTTGAATGCTCTGAGGGAACTCAGGGTAGACTTCATTCTACTTGCTGGT 600 consensus_6040#1 -----GAAACTTATACCGGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATT 55 consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 TACCTGAAACTTATACCTGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATT 660 consensus_6040#1 CACCCTTCACTACTCCCAGCATTTGGAGGAAAAGGTTATTATGGTTTGAAGGTGCATAAA 115 consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 CACCCTTCACTACTCCCAGCATTTGGAGGCAAAGGTTATTATGGTTTGAAGGTGCATAAA 720 consensus_6040#1 GCAGTCATCGCATCAGGGGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCAC 175 consensus_6040#2 -------TCGCATCAGGAGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCAC 53 consensus_6040#0 GCAGTCATCGCATCAGGGGCCAGGTATTCGGGTCCAACTGTGCACTTTGTGGATGAGCAC 780 ********** ******** ********************************* consensus_6040#1 TATGACACAGGAAGTACTCTAGCCCAAAGGGTTGTGCCTGTGCTAGCCAATGATACTCCA 235 consensus_6040#2 TATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCAAGCCAATGATACTCCA 113 consensus_6040#0 TATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCTAGCCAATGATACTCCA 840 ************** ******************** ******* **************** consensus_6040#1 GAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCT 295 consensus_6040#2 GAGCAATTGGCTACAAGAGTCCTTCATGAGGANNATCAGGTTTATGTTGAGGCAGTTACT 173 consensus_6040#0 GAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCT 900 ************ ******************* *********************** ** consensus_6040#1 GCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTCCCACTTATTAGAAGGCAG 355 consensus_6040#2 GCCCTATGTGAGGACCGAATTGTGTGGAGAGAAGATGGTATCCCACTTATTAGAAGCCAG 233 consensus_6040#0 GCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTTCCACTTATTAGAAGTCAT 960 *********** *************************** * ************** ** consensus_6040#1 ACAAACCCTGACGAGTACACTTAACTCAT-GGTACTACCTCAAGGATTCCTGCGCAGCGT 414 consensus_6040#2 ACAAATCCCGATGAGTACACTTAACTCATTGGTATTATCTCAAGGATTGCTGCGCAGCGC 293 consensus_6040#0 ACAAACCCTGACGAGTACACTTAACTCAT-AGTACTACCTCAAGGATTGCTGCGCAGCAT 1019 ***** ** ** ***************** *** ** ********** ********* consensus_6040#1 G-----CACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTTTCCCAAGGCGTGAAG 469 consensus_6040#2 AGTGCTTACGTAATGAGGCTTCTAGAATGCCTGCATTATTTTT---CCCAAAGCATAAAG 350 consensus_6040#0 G-----CACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTT--CCCAAGGCATGAAG 1072 ****************************** ***** ***** ** * *** consensus_6040#1 GTCACTCGTACTAATTGAGATAAATAACATGTCTGGTGCTGNTACTGAAACAAAATATCT 529 consensus_6040#2 GCCACTCATACTAATTGAGATAAATAACATGTCTGGTGTTGTTACTGAAACAAAATATCT 410 consensus_6040#0 GTCACTCGTACTAATTGAGATAAATAACTTGTCTGGTGCTGTTACTGAAACAAAATATCT 1132 * ***** ******************** ********* ** ****************** consensus_6040#1 TGTGCCGTTCAATTCACTCCTTGTTGTGTGACTTTGCTCCAACAGTGACATGTGCCATAG 589 consensus_6040#2 TGTTCCGTTTAATG---------------------------------------------- 424 consensus_6040#0 TGTGCCGTTCAACTCACCGCTTGTTGTGTGACTTTGCTCCAACAATGACATGCGC-ATAG 1191 *** ***** ** consensus_6040#1 GCCGATACTTAGAAACCTCAGTGNTTGGTGGTANGACTTG-GGAAGCATACTGTTTGCTG 648 consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 GCCGATACTTAGAAACCTCAGTGTTTGCTGGTGTGACTTGCGGAAGCATACTGGTTGCTG 1251 consensus_6040#1 CATGCACCAAGGTTTTTTTTCTCTTTTTCTTTTTCCTTTTTTTTGGGGGGGGGGGGG--- 705 consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 CATGCACCAAGTTTTTTTTTTTTTTGTGTGTGTGACAGAGCGGGGTGGGGGGGGGGGGAG 1311 consensus_6040#1 -----CCATTATACN--TTANNCTTGGNAATGGTGGAATTGGCTGAAGCCAAGTCGATCA 758 consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 GGGGTCCATTGTACCCTTTAGTCTTGGAATTGTTGTAATCGGCTGAAGTCAAGTCGATCA 1371 consensus_6040#1 GAGAGGGAGTAAAAACTGGTCAAAATCCCACAGGNTTTCAAAGGGGAANCCGGATTACCA 818 consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 AAGAGGGAGTAAAAACTGGTCAGA-TCACACAGGTTTTCAATGTGTAATCTGATTAC--- 1427 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||