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Oryza sativa
cluster # 6043 cluster # 6043       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6043#0 length = 2394 sequences # 1  
consensus_6043#1 length = 682 sequences # 1  
consensus_6043#2 length = 607 sequences # 1  

consensusID : consensus_6043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2394
fasta sequence
                              [GATGCTGCGTGTGGGGGATGATCCTCTCCCAGCTGGGAGGCTCCTCCGTCCGTGCTCCCCTCGCTGCGCCGCCATGGCTCGCCGGTGGCCGCCACTGGTGGTCGGCCTCGCTCTCCTCCTCCTCCTCTCCGTCGCGGCCTCCTCCGTGGTGGCCAAGACCGACCAGCCTGACGTTGCTGCTCTGAACGTGATGTTTGAGAGCATGAACAAACCGTCTGAATTGTTGGGTTGGAAAGCGAGCGGCGGTGATCCGTGTGGTGATGACGACGAGTGGAAAGGGATCGAATGCAGCGATTCATCTGTCACAGAGATCAACTTGTCGGGGCTTGGATTAAGCGGCACGCTAGGTTATCAGCTATCGAGCTTGAAATCAGTAACCAAACTCGATGTCAGCAAGAACAATTTAAATGGTGAAATCCCATACCAGCTTCCACCAAATGTGGTTCAGTTAAATCTTCGAGGAAATGCCTTCAGCGGTGGTGTTCCTTATTCGATATCTCAGATGACTGATCTGGAAACGCTAAATCTTGGTAAGAATCAATTGAGCGGGCAGTTGACAGATATGTTTTCTCAGCTGCCAAAGCTTACAACAATGGATTTGTCATTCAATAGCTTCTCAGGTAACCTGCCTCCGAGTTTTCAATACCTCAAGAACCTCAAAACACTAGATGTGGAGAGCAACCAATTCAGTGGTCATATAAATGTGCTGGCCAAACTTTCTCTTGAGGATCTGAATGTGAAGAACAACAAGTTCACTGGGTGGATCCCAAGTAAACTGAAGAGCATTGACAATTTAGAGACTGGTGGGAACTCTTGGTCATCTGGGCCAGCTCCTCCTGGCATGGAGAAGGAGTCTTCGGCAGGAAGCTCAAATGGAAGGGATGATAGCGGAATCAATGGTTTCGCCATTGGAGCAATGGTGATAGCTGTGCTTCTTGCAGCTCTGATTCTCTTGTCTGTGCTGAGGAGGAATCATTCCTCTCCCGTCTCATCTCATTACTACACGGATGAGTCAGGCCCATCGATGGGCTGTAAGACACCGCCTGCTGTTCCTCGCAAGTCGATGAGTGACAATGAGTTTGAGAACAAACTGAATCATTCGAGGCGAAGCACAGACCCCATCAGCTTGATGAATCATTCATCATCAGACCTACAAGCAGCTACTGGCAACTTCTCTAGTAACAGACAACTAGGTCAGGGGACAACCGGTTGCGTTTTCAGGGCAAAATATGCTGATGGACGGGTACCGGCTGTCAAGAAGTTTGATCCATTGAGCTTCTCAGGAAGCAGTGACTTCATGGACACCGTCAACGGCATTGCCAAGCTGCGCCATACAAATATCTCTGAACTTGTTGGTTACTGCTCAGAGCCTGGGCACTACATGCTGGTCTATGATTACCATATGAATGGATCCCTGTATGATTTCCTGCACTTGTCAGATGACTACAGCAGGCCTCTGACCTGGGACACCCGAGTTCGGATAGCTGCCTGTACAGCCCATGCTCTGGAGTACCTACATGAGGTCTGTTCACCTCCAGTGCTCCACAAAAACATAAAGTCTTCAAATGTCTTGCTTGATGCTGATCTCAACCCTCACCTCTCGGATTGCGGCCTTTCATTCTTCTATGAGGACGCAAGTGAGAACTTGGGACCTGGGTACAGTGCTCCAGAGTGCTCAAGACCATCAGCTTACGTGATGAAGAGCGATGTCTACAGCTTCGGAGTCATCATGCTGGAGCTACTAACCGGCCGAAAGCCTTATGATAGCTCCAAGCCAAGAACAGAGCAGTGCTTGGTCAAGTATGTGGCTCCACAGCTCCATGACAGCGATGCGTTGGGATCACTGGCAGATCCAGCTCTACGCGGTCTCTACCCACCAAAGGCGCTCTCCCGCTTCGCCGATTGTATCGCTCTCTGCGTTCAGGCTGATCCAGAGTTCCGGCCGTCCATGTCGGAGGTGGTGCAGTCGCTCCTCCGCTGCGTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGGAGCGACATCTTCGATTGGTGATGGTGATGCACTTCACCGAATCATTGCCGACTTTGATTGAGGTTTATCTGAAGCAAAACTGCCCGTCAAGTCGTTCGTGCCATTGTACAAAAAGAAACGGCTTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGACGGCAAGAATGCGTTATTGTATTCTACTTGTAGTGTATATTGTACTGATTTGTTCTTCCCCCTTTGTTTTGTTTTTATCGCTCTAAGGAGCACATGTAAAAGTCTGATACTGGAGTAGATAGTTAGTAAATGAATACATATGTAAAAGGCCTCTCTACCTAGCCACCTAGGTAACAGCAAGTTCAGTAACA]

[+] EMBL AK111842             [GATGCTGCGTGTGGGGGATGATCCTCTCCCAGCTGGGAGGCTCCTCCGTCCGTGCTCCCCTCGCTGCGCCGCCATGGCTCGCCGGTGGCCGCCACTGGTGGTCGGCCTCGCTCTCCTCCTCCTCCTCTCCGTCGCGGCCTCCTCCGTGGTGGCCAAGACCGACCAGCCTGACGTTGCTGCTCTGAACGTGATGTTTGAGAGCATGAACAAACCGTCTGAATTGTTGGGTTGGAAAGCGAGCGGCGGTGATCCGTGTGGTGATGACGACGAGTGGAAAGGGATCGAATGCAGCGATTCATCTGTCACAGAGATCAACTTGTCGGGGCTTGGATTAAGCGGCACGCTAGGTTATCAGCTATCGAGCTTGAAATCAGTAACCAAACTCGATGTCAGCAAGAACAATTTAAATGGTGAAATCCCATACCAGCTTCCACCAAATGTGGTTCAGTTAAATCTTCGAGGAAATGCCTTCAGCGGTGGTGTTCCTTATTCGATATCTCAGATGACTGATCTGGAAACGCTAAATCTTGGTAAGAATCAATTGAGCGGGCAGTTGACAGATATGTTTTCTCAGCTGCCAAAGCTTACAACAATGGATTTGTCATTCAATAGCTTCTCAGGTAACCTGCCTCCGAGTTTTCAATACCTCAAGAACCTCAAAACACTAGATGTGGAGAGCAACCAATTCAGTGGTCATATAAATGTGCTGGCCAAACTTTCTCTTGAGGATCTGAATGTGAAGAACAACAAGTTCACTGGGTGGATCCCAAGTAAACTGAAGAGCATTGACAATTTAGAGACTGGTGGGAACTCTTGGTCATCTGGGCCAGCTCCTCCTGGCATGGAGAAGGAGTCTTCGGCAGGAAGCTCAAATGGAAGGGATGATAGCGGAATCAATGGTTTCGCCATTGGAGCAATGGTGATAGCTGTGCTTCTTGCAGCTCTGATTCTCTTGTCTGTGCTGAGGAGGAATCATTCCTCTCCCGTCTCATCTCATTACTACACGGATGAGTCAGGCCCATCGATGGGCTGTAAGACACCGCCTGCTGTTCCTCGCAAGTCGATGAGTGACAATGAGTTTGAGAACAAACTGAATCATTCGAGGCGAAGCACAGACCCCATCAGCTTGATGAATCATTCATCATCAGACCTACAAGCAGCTACTGGCAACTTCTCTAGTAACAGACAACTAGGTCAGGGGACAACCGGTTGCGTTTTCAGGGCAAAATATGCTGATGGACGGGTACCGGCTGTCAAGAAGTTTGATCCATTGAGCTTCTCAGGAAGCAGTGACTTCATGGACACCGTCAACGGCATTGCCAAGCTGCGCCATACAAATATCTCTGAACTTGTTGGTTACTGCTCAGAGCCTGGGCACTACATGCTGGTCTATGATTACCATATGAATGGATCCCTGTATGATTTCCTGCACTTGTCAGATGACTACAGCAGGCCTCTGACCTGGGACACCCGAGTTCGGATAGCTGCCTGTACAGCCCATGCTCTGGAGTACCTACATGAGGTCTGTTCACCTCCAGTGCTCCACAAAAACATAAAGTCTTCAAATGTCTTGCTTGATGCTGATCTCAACCCTCACCTCTCGGATTGCGGCCTTTCATTCTTCTATGAGGACGCAAGTGAGAACTTGGGACCTGGGTACAGTGCTCCAGAGTGCTCAAGACCATCAGCTTACGTGATGAAGAGCGATGTCTACAGCTTCGGAGTCATCATGCTGGAGCTACTAACCGGCCGAAAGCCTTATGATAGCTCCAAGCCAAGAACAGAGCAGTGCTTGGTCAAGTATGTGGCTCCACAGCTCCATGACAGCGATGCGTTGGGATCACTGGCAGATCCAGCTCTACGCGGTCTCTACCCACCAAAGGCGCTCTCCCGCTTCGCCGATTGTATCGCTCTCTGCGTTCAGGCTGATCCAGAGTTCCGGCCGTCCATGTCGGAGGTGGTGCAGTCGCTCCTCCGCTGCGTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGGAGCGACATCTTCGATTGGTGATGGTGATGCACTTCACCGAATCATTGCCGACTTTGATTGAGGTTTATCTGAAGCAAAACTGCCCGTCAAGTCGTTCGTGCCATTGTACAAAAAGAAACGGCTTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGACGGCAAGAATGCGTTATTGTATTCTACTTGTAGTGTATATTGTACTGATTTGTTCTTCCCCCTTTGTTTTGTTTTTATCGCTCTAAGGAGCACATGTAAAAGTCTGATACTGGAGTAGATAGTTAGTAAATGAATACATATGTAAAAGGCCTCTCTACCTAGCCACCTAGGTAACAGCAAGTTCAGTAACA]


>consensus_6043#0 GATGCTGCGTGTGGGGGATGATCCTCTCCCAGCTGGGAGGCTCCTCCGTCCGTGCTCCCC TCGCTGCGCCGCCATGGCTCGCCGGTGGCCGCCACTGGTGGTCGGCCTCGCTCTCCTCCT CCTCCTCTCCGTCGCGGCCTCCTCCGTGGTGGCCAAGACCGACCAGCCTGACGTTGCTGC TCTGAACGTGATGTTTGAGAGCATGAACAAACCGTCTGAATTGTTGGGTTGGAAAGCGAG CGGCGGTGATCCGTGTGGTGATGACGACGAGTGGAAAGGGATCGAATGCAGCGATTCATC TGTCACAGAGATCAACTTGTCGGGGCTTGGATTAAGCGGCACGCTAGGTTATCAGCTATC GAGCTTGAAATCAGTAACCAAACTCGATGTCAGCAAGAACAATTTAAATGGTGAAATCCC ATACCAGCTTCCACCAAATGTGGTTCAGTTAAATCTTCGAGGAAATGCCTTCAGCGGTGG TGTTCCTTATTCGATATCTCAGATGACTGATCTGGAAACGCTAAATCTTGGTAAGAATCA ATTGAGCGGGCAGTTGACAGATATGTTTTCTCAGCTGCCAAAGCTTACAACAATGGATTT GTCATTCAATAGCTTCTCAGGTAACCTGCCTCCGAGTTTTCAATACCTCAAGAACCTCAA AACACTAGATGTGGAGAGCAACCAATTCAGTGGTCATATAAATGTGCTGGCCAAACTTTC TCTTGAGGATCTGAATGTGAAGAACAACAAGTTCACTGGGTGGATCCCAAGTAAACTGAA GAGCATTGACAATTTAGAGACTGGTGGGAACTCTTGGTCATCTGGGCCAGCTCCTCCTGG CATGGAGAAGGAGTCTTCGGCAGGAAGCTCAAATGGAAGGGATGATAGCGGAATCAATGG TTTCGCCATTGGAGCAATGGTGATAGCTGTGCTTCTTGCAGCTCTGATTCTCTTGTCTGT GCTGAGGAGGAATCATTCCTCTCCCGTCTCATCTCATTACTACACGGATGAGTCAGGCCC ATCGATGGGCTGTAAGACACCGCCTGCTGTTCCTCGCAAGTCGATGAGTGACAATGAGTT TGAGAACAAACTGAATCATTCGAGGCGAAGCACAGACCCCATCAGCTTGATGAATCATTC ATCATCAGACCTACAAGCAGCTACTGGCAACTTCTCTAGTAACAGACAACTAGGTCAGGG GACAACCGGTTGCGTTTTCAGGGCAAAATATGCTGATGGACGGGTACCGGCTGTCAAGAA GTTTGATCCATTGAGCTTCTCAGGAAGCAGTGACTTCATGGACACCGTCAACGGCATTGC CAAGCTGCGCCATACAAATATCTCTGAACTTGTTGGTTACTGCTCAGAGCCTGGGCACTA CATGCTGGTCTATGATTACCATATGAATGGATCCCTGTATGATTTCCTGCACTTGTCAGA TGACTACAGCAGGCCTCTGACCTGGGACACCCGAGTTCGGATAGCTGCCTGTACAGCCCA TGCTCTGGAGTACCTACATGAGGTCTGTTCACCTCCAGTGCTCCACAAAAACATAAAGTC TTCAAATGTCTTGCTTGATGCTGATCTCAACCCTCACCTCTCGGATTGCGGCCTTTCATT CTTCTATGAGGACGCAAGTGAGAACTTGGGACCTGGGTACAGTGCTCCAGAGTGCTCAAG ACCATCAGCTTACGTGATGAAGAGCGATGTCTACAGCTTCGGAGTCATCATGCTGGAGCT ACTAACCGGCCGAAAGCCTTATGATAGCTCCAAGCCAAGAACAGAGCAGTGCTTGGTCAA GTATGTGGCTCCACAGCTCCATGACAGCGATGCGTTGGGATCACTGGCAGATCCAGCTCT ACGCGGTCTCTACCCACCAAAGGCGCTCTCCCGCTTCGCCGATTGTATCGCTCTCTGCGT TCAGGCTGATCCAGAGTTCCGGCCGTCCATGTCGGAGGTGGTGCAGTCGCTCCTCCGCTG CGTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGGAG CGACATCTTCGATTGGTGATGGTGATGCACTTCACCGAATCATTGCCGACTTTGATTGAG GTTTATCTGAAGCAAAACTGCCCGTCAAGTCGTTCGTGCCATTGTACAAAAAGAAACGGC TTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGACGGCAAGAATGCGTTAT TGTATTCTACTTGTAGTGTATATTGTACTGATTTGTTCTTCCCCCTTTGTTTTGTTTTTA TCGCTCTAAGGAGCACATGTAAAAGTCTGATACTGGAGTAGATAGTTAGTAAATGAATAC ATATGTAAAAGGCCTCTCTACCTAGCCACCTAGGTAACAGCAAGTTCAGTAACA



consensusID : consensus_6043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [AGCCTGGCTATGTAGAGCGAAGGTAAACGCTTCGGGTTCATCATCCGGACGTGACAACACCGCCAAAACGCCTTTTCGCAGTTCCTAGTCAAGAATGGCATCAGTGCTTGGTCAAGTATTTGAGTCCNCAAGTCCATGCAAGCAAGGCCTTGGGATCCATGGCAGATACAGCTTTGCCGGGTCTCTACCCACCAAAGGCGCTCTCCCGCTTCCCCGATTGTATCGCTCTCTGCGTTCAGGATGATCCAGAATTCCGGCCGTCCATGTTGGAGGTGGTGCAGTCGCTCCTCCCGTGCGTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGGAGCGCCATCTCCGATTGGTGATGGTGATGCCCTTCCCCGAATCATTGCCGACTTTGATTGAGGTTTATTTGAAGCAAAACTGCCCGTCAAGTCGTTCGTGCCATTGTACAAAAAAGAAACGGCTTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGACGGCAAGAATGCGTTATTGTATTCTACTTGTAGTGTATACTGTACTGATATGTTCTTCCCCCTTTGTTTTGTTTTTATCGCTTTAAGGAGCACATGTAAAAGTCTGATACTGGACTAGATAGTTAGTAAATGAATCCCCATGTAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA762239             [AGCCTGGCTATGTAGAGCGAAGGTAAACGCTTCGGGTTCATCATCCGGACGTGACAACACCGCCAAAACGCCTTTTCGCAGTTCCTAGTCAAGAATGGCATCAGTGCTTGGTCAAGTATTTGAGTCCNCAAGTCCATGCAAGCAAGGCCTTGGGATCCATGGCAGATACAGCTTTGCCGGGTCTCTACCCACCAAAGGCGCTCTCCCGCTTCCCCGATTGTATCGCTCTCTGCGTTCAGGATGATCCAGAATTCCGGCCGTCCATGTTGGAGGTGGTGCAGTCGCTCCTCCCGTGCGTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGGAGCGCCATCTCCGATTGGTGATGGTGATGCCCTTCCCCGAATCATTGCCGACTTTGATTGAGGTTTATTTGAAGCAAAACTGCCCGTCAAGTCGTTCGTGCCATTGTACAAAAAAGAAACGGCTTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGACGGCAAGAATGCGTTATTGTATTCTACTTGTAGTGTATACTGTACTGATATGTTCTTCCCCCTTTGTTTTGTTTTTATCGCTTTAAGGAGCACATGTAAAAGTCTGATACTGGACTAGATAGTTAGTAAATGAATCCCCATGTAAAAAAAAAAAAAAAAAAAA]


>consensus_6043#1 AGCCTGGCTATGTAGAGCGAAGGTAAACGCTTCGGGTTCATCATCCGGACGTGACAACAC CGCCAAAACGCCTTTTCGCAGTTCCTAGTCAAGAATGGCATCAGTGCTTGGTCAAGTATT TGAGTCCNCAAGTCCATGCAAGCAAGGCCTTGGGATCCATGGCAGATACAGCTTTGCCGG GTCTCTACCCACCAAAGGCGCTCTCCCGCTTCCCCGATTGTATCGCTCTCTGCGTTCAGG ATGATCCAGAATTCCGGCCGTCCATGTTGGAGGTGGTGCAGTCGCTCCTCCCGTGCGTGC AGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGGAGCGCCA TCTCCGATTGGTGATGGTGATGCCCTTCCCCGAATCATTGCCGACTTTGATTGAGGTTTA TTTGAAGCAAAACTGCCCGTCAAGTCGTTCGTGCCATTGTACAAAAAAGAAACGGCTTTG AGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGACGGCAAGAATGCGTTATTGTA TTCTACTTGTAGTGTATACTGTACTGATATGTTCTTCCCCCTTTGTTTTGTTTTTATCGC TTTAAGGAGCACATGTAAAAGTCTGATACTGGACTAGATAGTTAGTAAATGAATCCCCAT GTAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_6043#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence
                              [AGAGGACAGANCAAGGGGGAGCAGTGCTTGGTCAAGTATGTGGCTCCACAGCTCCATGACAGCGATGCCTTGGGATCACTGGCAGATCCAGCTCTACGCGGTCTCTACCCACCAAAGGCGCTCTCCCGCTTCGCTGATTGTATCGCTCTTTGCGTTCAGGCTGATCCAGAATTCCGGCCGTCCATGTGGGAGGTGGTGCAGTCGCTCCTCCGATGCGTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGGAGCGACATCTCCGATTGGTGATGGTGATGCACTTCACCGAATCATTGCCGACTTTGATTGAGGTTTATCTGAAGCAAAACTGCCCGTCAAGTCGCTCGTGCCATTGTACAAAAAAGAAACGGCGTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGCCGGCAAGAATGCGTTATTGTATTCTACTTGTAGTGTATACTGTACTGATATGTTCTTCCCCCTTTGTTTTGTTTTTATCGCTCTAAGGAGCACATGTAAAAGTCTGATCCTGGACTAGATAGTTAGTAAATGAATACCCATGTAAAAGGCCAAAAAAAAAAAAAAAAA]

[-] EMBL CA759158             [AGAGGACAGANCAAGGGGGAGCAGTGCTTGGTCAAGTATGTGGCTCCACAGCTCCATGACAGCGATGCCTTGGGATCACTGGCAGATCCAGCTCTACGCGGTCTCTACCCACCAAAGGCGCTCTCCCGCTTCGCTGATTGTATCGCTCTTTGCGTTCAGGCTGATCCAGAATTCCGGCCGTCCATGTGGGAGGTGGTGCAGTCGCTCCTCCGATGCGTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGGAGCGACATCTCCGATTGGTGATGGTGATGCACTTCACCGAATCATTGCCGACTTTGATTGAGGTTTATCTGAAGCAAAACTGCCCGTCAAGTCGCTCGTGCCATTGTACAAAAAAGAAACGGCGTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGCCGGCAAGAATGCGTTATTGTATTCTACTTGTAGTGTATACTGTACTGATATGTTCTTCCCCCTTTGTTTTGTTTTTATCGCTCTAAGGAGCACATGTAAAAGTCTGATCCTGGACTAGATAGTTAGTAAATGAATACCCATGTAAAAGGCCAAAAAAAAAAAAAAAAA]


>consensus_6043#2 AGAGGACAGANCAAGGGGGAGCAGTGCTTGGTCAAGTATGTGGCTCCACAGCTCCATGAC AGCGATGCCTTGGGATCACTGGCAGATCCAGCTCTACGCGGTCTCTACCCACCAAAGGCG CTCTCCCGCTTCGCTGATTGTATCGCTCTTTGCGTTCAGGCTGATCCAGAATTCCGGCCG TCCATGTGGGAGGTGGTGCAGTCGCTCCTCCGATGCGTGCAGCGCACCATCAGCAACAGG GGGATGGCCGGATACTTAAGCAACTCACAGCGGAGCGACATCTCCGATTGGTGATGGTGA TGCACTTCACCGAATCATTGCCGACTTTGATTGAGGTTTATCTGAAGCAAAACTGCCCGT CAAGTCGCTCGTGCCATTGTACAAAAAAGAAACGGCGTTGAGGTTAAGAGTAATCAAATT GGTTAATTTTTAGAGAAGCCGGCAAGAATGCGTTATTGTATTCTACTTGTAGTGTATACT GTACTGATATGTTCTTCCCCCTTTGTTTTGTTTTTATCGCTCTAAGGAGCACATGTAAAA GTCTGATCCTGGACTAGATAGTTAGTAAATGAATACCCATGTAAAAGGCCAAAAAAAAAA AAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6043#0      GATGCTGCGTGTGGGGGATGATCCTCTCCCAGCTGGGAGGCTCCTCCGTCCGTGCTCCCC 60
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      TCGCTGCGCCGCCATGGCTCGCCGGTGGCCGCCACTGGTGGTCGGCCTCGCTCTCCTCCT 120
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      CCTCCTCTCCGTCGCGGCCTCCTCCGTGGTGGCCAAGACCGACCAGCCTGACGTTGCTGC 180
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      TCTGAACGTGATGTTTGAGAGCATGAACAAACCGTCTGAATTGTTGGGTTGGAAAGCGAG 240
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      CGGCGGTGATCCGTGTGGTGATGACGACGAGTGGAAAGGGATCGAATGCAGCGATTCATC 300
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      TGTCACAGAGATCAACTTGTCGGGGCTTGGATTAAGCGGCACGCTAGGTTATCAGCTATC 360
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      GAGCTTGAAATCAGTAACCAAACTCGATGTCAGCAAGAACAATTTAAATGGTGAAATCCC 420
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      ATACCAGCTTCCACCAAATGTGGTTCAGTTAAATCTTCGAGGAAATGCCTTCAGCGGTGG 480
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      TGTTCCTTATTCGATATCTCAGATGACTGATCTGGAAACGCTAAATCTTGGTAAGAATCA 540
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      ATTGAGCGGGCAGTTGACAGATATGTTTTCTCAGCTGCCAAAGCTTACAACAATGGATTT 600
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      GTCATTCAATAGCTTCTCAGGTAACCTGCCTCCGAGTTTTCAATACCTCAAGAACCTCAA 660
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      AACACTAGATGTGGAGAGCAACCAATTCAGTGGTCATATAAATGTGCTGGCCAAACTTTC 720
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      TCTTGAGGATCTGAATGTGAAGAACAACAAGTTCACTGGGTGGATCCCAAGTAAACTGAA 780
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      GAGCATTGACAATTTAGAGACTGGTGGGAACTCTTGGTCATCTGGGCCAGCTCCTCCTGG 840
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      CATGGAGAAGGAGTCTTCGGCAGGAAGCTCAAATGGAAGGGATGATAGCGGAATCAATGG 900
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      TTTCGCCATTGGAGCAATGGTGATAGCTGTGCTTCTTGCAGCTCTGATTCTCTTGTCTGT 960
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      GCTGAGGAGGAATCATTCCTCTCCCGTCTCATCTCATTACTACACGGATGAGTCAGGCCC 1020
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      ATCGATGGGCTGTAAGACACCGCCTGCTGTTCCTCGCAAGTCGATGAGTGACAATGAGTT 1080
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      TGAGAACAAACTGAATCATTCGAGGCGAAGCACAGACCCCATCAGCTTGATGAATCATTC 1140
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      ATCATCAGACCTACAAGCAGCTACTGGCAACTTCTCTAGTAACAGACAACTAGGTCAGGG 1200
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      GACAACCGGTTGCGTTTTCAGGGCAAAATATGCTGATGGACGGGTACCGGCTGTCAAGAA 1260
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      GTTTGATCCATTGAGCTTCTCAGGAAGCAGTGACTTCATGGACACCGTCAACGGCATTGC 1320
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      CAAGCTGCGCCATACAAATATCTCTGAACTTGTTGGTTACTGCTCAGAGCCTGGGCACTA 1380
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      CATGCTGGTCTATGATTACCATATGAATGGATCCCTGTATGATTTCCTGCACTTGTCAGA 1440
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      TGACTACAGCAGGCCTCTGACCTGGGACACCCGAGTTCGGATAGCTGCCTGTACAGCCCA 1500
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      TGCTCTGGAGTACCTACATGAGGTCTGTTCACCTCCAGTGCTCCACAAAAACATAAAGTC 1560
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      TTCAAATGTCTTGCTTGATGCTGATCTCAACCCTCACCTCTCGGATTGCGGCCTTTCATT 1620
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      CTTCTATGAGGACGCAAGTGAGAACTTGGGACCTGGGTACAGTGCTCCAGAGTGCTCAAG 1680
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------------------------------------------------------------
                                                                                  

consensus_6043#0      ACCATCAGCTTACGTGATGAAGAGCGATGTCTACAGCTTCGGAGTCATCATGCTGGAGCT 1740
consensus_6043#2      ------------------------------------------------------------
consensus_6043#1      ------AGCCTG-GCTATGTAGAGCGAAGGTAAACGCTTCGGGTTCATCATCCGGACGTG 53
                                                                                  

consensus_6043#0      ACTAACCGGCCGAAA-GCCTTATGATAGCTCCAAGCCAAGAACAG-AGCAGTGCTTGGTC 1798
consensus_6043#2      ------------------------AGAGGACAGANCAAGGG--GG-AGCAGTGCTTGGTC 33
consensus_6043#1      ACAACACCGCCAAAACGCCTTTTCGCAGTTCCTAGTCAAGAATGGCATCAGTGCTTGGTC 113
                                                **  *  *   * *    * * ************

consensus_6043#0      AAGTATGTGGCTCCACAGCTCCATGACAGCGATGCGTTGGGATCACTGGCAGATCCAGCT 1858
consensus_6043#2      AAGTATGTGGCTCCACAGCTCCATGACAGCGATGCCTTGGGATCACTGGCAGATCCAGCT 93
consensus_6043#1      AAGTATTTGAGTCCNCAAGTCCATGCAAGCAAGGCCTTGGGATCCATGGCAGATACAGCT 173
                      ****** **  *** **  ******  *** * ** ********  ******** *****

consensus_6043#0      CTACGCGGTCTCTACCCACCAAAGGCGCTCTCCCGCTTCGCCGATTGTATCGCTCTCTGC 1918
consensus_6043#2      CTACGCGGTCTCTACCCACCAAAGGCGCTCTCCCGCTTCGCTGATTGTATCGCTCTTTGC 153
consensus_6043#1      TTGCCGGGTCTCTACCCACCAAAGGCGCTCTCCCGCTTCCCCGATTGTATCGCTCTCTGC 233
                       * *  ********************************* * ************** ***

consensus_6043#0      GTTCAGGCTGATCCAGAGTTCCGGCCGTCCATGTCGGAGGTGGTGCAGTCGCTCCTCCGC 1978
consensus_6043#2      GTTCAGGCTGATCCAGAATTCCGGCCGTCCATGTGGGAGGTGGTGCAGTCGCTCCTCCGA 213
consensus_6043#1      GTTCAGGATGATCCAGAATTCCGGCCGTCCATGTTGGAGGTGGTGCAGTCGCTCCTCCCG 293
                      ******* ********* **************** ***********************  

consensus_6043#0      TGCGTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGG 2038
consensus_6043#2      TGCGTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGG 273
consensus_6043#1      TGCGTGCAGCGCACCATCAGCAACAGGGGGATGGCCGGATACTTAAGCAACTCACAGCGG 353
                      ************************************************************

consensus_6043#0      AGCGACATCTTCGATTGGTGATGGTGATGCACTTCACCGAATCATTGCCGACTTTGATTG 2098
consensus_6043#2      AGCGACATCTCCGATTGGTGATGGTGATGCACTTCACCGAATCATTGCCGACTTTGATTG 333
consensus_6043#1      AGCGCCATCTCCGATTGGTGATGGTGATGCCCTTCCCCGAATCATTGCCGACTTTGATTG 413
                      **** ***** ******************* **** ************************

consensus_6043#0      AGGTTTATCTGAAGCAAAACTGCCCGTCAAGTCGTTCGTGCCATTGTACAAAAA-GAAAC 2157
consensus_6043#2      AGGTTTATCTGAAGCAAAACTGCCCGTCAAGTCGCTCGTGCCATTGTACAAAAAAGAAAC 393
consensus_6043#1      AGGTTTATTTGAAGCAAAACTGCCCGTCAAGTCGTTCGTGCCATTGTACAAAAAAGAAAC 473
                      ******** ************************* ******************* *****

consensus_6043#0      GGCTTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGACGGCAAGAATGCGT 2217
consensus_6043#2      GGCGTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGCCGGCAAGAATGCGT 453
consensus_6043#1      GGCTTTGAGGTTAAGAGTAATCAAATTGGTTAATTTTTAGAGAAGACGGCAAGAATGCGT 533
                      *** ***************************************** **************

consensus_6043#0      TATTGTATTCTACTTGTAGTGTATATTGTACTGATTTGTTCTTCCCCCTTTGTTTTGTTT 2277
consensus_6043#2      TATTGTATTCTACTTGTAGTGTATACTGTACTGATATGTTCTTCCCCCTTTGTTTTGTTT 513
consensus_6043#1      TATTGTATTCTACTTGTAGTGTATACTGTACTGATATGTTCTTCCCCCTTTGTTTTGTTT 593
                      ************************* ********* ************************

consensus_6043#0      TTATCGCTCTAAGGAGCACATGTAAAAGTCTGATACTGGAGTAGATAGTTAGTAAATGAA 2337
consensus_6043#2      TTATCGCTCTAAGGAGCACATGTAAAAGTCTGATCCTGGACTAGATAGTTAGTAAATGAA 573
consensus_6043#1      TTATCGCTTTAAGGAGCACATGTAAAAGTCTGATACTGGACTAGATAGTTAGTAAATGAA 653
                      ******** ************************* ***** *******************

consensus_6043#0      TACATATGTAAAAGGCCTCTCTACCTAGCCACCTAGGTAACAGCAAGTTCAGTAACA 2394
consensus_6043#2      TACCCATGTAAAAGGCCAAAAAAAAAAAAAAAAA----------------------- 607
consensus_6043#1      TCCCCATGTAAAAAAAAAAAAAAAAAAAA---------------------------- 682
                      * *  ********         *   *                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)