Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6050 cluster # 6050       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6050#0 length = 946 sequences # 3  

consensusID : consensus_6050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 946
fasta sequence
                              [GGACTACGGGGCCTAAGAAGCAGCGAGCCCAACAAGCAAGCAACCGCCTTTTTAGCCTTTATTCCTTGCCTCCCCACGACGCGTTTCTTCGTGAGCTGTAGTAACTAGCAACAGCAAAGCCAAAGCCCCTCTCGTCAACGACCTCGTCGCGCCCGAGGCACCCAATTCGCGCCGGCCATGGCGGTGGCGACGCTGTCGTCGAGGTCGAGGCGCGCGTGCGCGGAGGCGGCGTCCGTGCTCCTCGTCCTCCTCGTCATCGCGCCGTCGGTGGCAGCCGGGGGCGACACCAACGGCGTGTACGAGCCGTGCGCGGACGCGGCGGTGCAGCGCGGGGACGGGTTCACCTTCGGCGTGGCCTTCGCGGCGCGCGGCGACTTCTTCTCCGGCGGCGTGCAGCTCTCCCCCTGCGACGGAAGGCTGTCGCTGGCGTCCAAGGGCGCCAAGCTCGCGGTGTTCCGCCCCGAGGTCGACGAGATTTCGCTCCTCACCGTCAACACCTCCGCCGCCGGTGGCTTCGACCCGATGGTGTATACACACGAGGAACCCTAACTGACTGCACGGTTGCGTATATCAGGAACCCGAAGTTTGGCATAAACGCATAAAGAACTAGTCCTCTAGTTTCTTCTTTTTTATCTAATTTTATATAGACACAATTCCTTTTCAATAAAGAATTTATGCTGTCAGTTTCGTCATGCAATAGGTTTTAGTTAGAATCAAACACCCTAATTGCCTAGTGAGAAACAGAGAAACGAAGAACTTGCCGGTGAATTGTCAATTTGTCATGAACATTGGCAATCACGACCTGCTTGGGGAGGATGAAGACAAAAGTTGGGGGGAGCTGGATTATGTGTCCCATATGGATTGATACAGCACCATTTTTTGGACTCTTTGTAGGAGCTCTAGTAACACAGATGGAAATGGTCCCATGAACATGCTTCTCTGTTTT]

[+] EMBL OSR3275A             [GGACTACGGGGCCTAAGAAGCAGCGAGCCCAACAAGCAAGCAACCGCCTTTTTAGCCTTTATTCCTTGCCTCCCCACGACGCGTTTCTTCGTGAGCTGTAGTAACTAGCAACAGCAAAGCCAAAGCCCCTCTCGTCAACGACCTCGTCGCGCCCGAGGCACCCAATTNGCGCCGGCCATAGNGGTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK110858             [                                                                                                   AGTAACTAGCAACAGCAAAGCCAAAGCCCCTCTCGTCAACGACCTCGTCGCGCCCGAGGCACCCAATTCGCGCCGGCCATGGCGGTGGCGACGCTGTCGTCGAGGTCGAGGCGCGCGTGCGCGGAGGCGGCGTCCGTGCTCCTCGTCCTCCTCGTCATCGCGCCGTCGGTGGCAGCCGGGGGCGACACCAACGGCGTGTACGAGCCGTGCGCGGACGCGGCGGTGCAGCGCGGGGACGGGTTCACCTTCGGCGTGGCCTTCGCGGCGCGCGGCGACTTCTTCTCCGGCGGCGTGCAGCTCTCCCCCTGCGACGGAAGGCTGTCGCTGGCGTCCAAGGGCGCCAAGCTCGCGGTGTTCCGCCCCGAGGTCGACGAGATTTCGCTCCTCACCGTCAACACCTCCGCCGCCGGTGGCTTCGACCCGATGGTGTATACACACGAGGAACCCTAACTGACTGCACGGTTGCGTATATCAGGAACCCGAAGTTTGGCATAAACGCATAAAGAACTAGTCCTCTAGTTTCTTCTTTTTTATCTAATTTTATATAGACACAATTCCTTTTCAATAAAGAATTTATGCTGTCAGTTTCGTCATGCAATAGGTTTTAGTTAGAATCAAACACCCTAATTGCCTAGTGAGAAACAGAGAAACGAAGAACTTGCCGGTGAATTGTCAATTTGTCATGAACATTGGCAATCACGACCTGCTTGGGGAGGATGAAGACAAAAGTTGGGGGGAGCTGGATTATGTGTCCCATATGGATTGATACAGCACCATTTTTTGGACTCTTTGTAGGAGCTCTAGTAACACAGATGGAAATGGTCCCATGAACATGCTTCTCTGTTTT]
[+] EMBL OSS14147A            [                                                                                                                 GCAAAGCCAAAGCCCCTCTCGTCAACGACCTCGTCGCGCCCGAGGCACCCAATTCGCGCCGGCCATGGCGGTGGCGACGCTGTCGTCGAGGTCGAGGCGCGCGTNCNGGAAGGCGGCGTCCGTGCTCCTCGTCCTNCTCGTCATCGNNCCGTCGGTGGCAGCCGGGGGCGACACCAACGGCGTGTACGAGCCGTGCGCGGACGGGGCGGTNCAGCGCGGGGACGGGTTCAACTTCGGCGTGGCCTTCGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_6050#0 GGACTACGGGGCCTAAGAAGCAGCGAGCCCAACAAGCAAGCAACCGCCTTTTTAGCCTTT ATTCCTTGCCTCCCCACGACGCGTTTCTTCGTGAGCTGTAGTAACTAGCAACAGCAAAGC CAAAGCCCCTCTCGTCAACGACCTCGTCGCGCCCGAGGCACCCAATTCGCGCCGGCCATG GCGGTGGCGACGCTGTCGTCGAGGTCGAGGCGCGCGTGCGCGGAGGCGGCGTCCGTGCTC CTCGTCCTCCTCGTCATCGCGCCGTCGGTGGCAGCCGGGGGCGACACCAACGGCGTGTAC GAGCCGTGCGCGGACGCGGCGGTGCAGCGCGGGGACGGGTTCACCTTCGGCGTGGCCTTC GCGGCGCGCGGCGACTTCTTCTCCGGCGGCGTGCAGCTCTCCCCCTGCGACGGAAGGCTG TCGCTGGCGTCCAAGGGCGCCAAGCTCGCGGTGTTCCGCCCCGAGGTCGACGAGATTTCG CTCCTCACCGTCAACACCTCCGCCGCCGGTGGCTTCGACCCGATGGTGTATACACACGAG GAACCCTAACTGACTGCACGGTTGCGTATATCAGGAACCCGAAGTTTGGCATAAACGCAT AAAGAACTAGTCCTCTAGTTTCTTCTTTTTTATCTAATTTTATATAGACACAATTCCTTT TCAATAAAGAATTTATGCTGTCAGTTTCGTCATGCAATAGGTTTTAGTTAGAATCAAACA CCCTAATTGCCTAGTGAGAAACAGAGAAACGAAGAACTTGCCGGTGAATTGTCAATTTGT CATGAACATTGGCAATCACGACCTGCTTGGGGAGGATGAAGACAAAAGTTGGGGGGAGCT GGATTATGTGTCCCATATGGATTGATACAGCACCATTTTTTGGACTCTTTGTAGGAGCTC TAGTAACACAGATGGAAATGGTCCCATGAACATGCTTCTCTGTTTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)