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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 997 fasta sequence
[CGGTGCAGATGAAACCACATGCGAAGAATGGACTATACCATGTAGGATTCTGCCTAACAAGAATCGCTCTGATCGTTGAACCATCTGGGTAGGTTGCACTGTATGGGATGGTGGCATTGTTGTTCGTCCAAAGAGAATTAATGTTGGCAATGGGGCTGGGATAATCAAAGGACCAAGAATGGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAGGCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTTGTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTGGGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGGATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAAACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGTGCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAGTGTATTAACCCAGGTAATTTCTGCAAACCAAGGTGCCGTTTGATCAGCTGACTACTTACTGCACAAACTGGGTCAGGAATCAGTGGGCCTTTGGTTTGTTAGTATAGACTTAAACAAATTGTTGGAAGGTAGTCATGTAGAGCACTAGTTATTAGCAGCCAATTGTAGTCATGCAGCGCACTCATGCAACCGTGCAGGTTCAACTTCTTCACCGACATCAGCAACCTGATGAATTTTGCACGCACGGTCGTTCTTCCCGTTGACATATTTGATAATCTCGATGCTGGTGTTTGCAAATCCTACATTTTGTACTTGTATATTTCAACAAGAAACTGGGTCGGTGACTACTTACTAGAAGCAATGCTATTTGACCGTCATTCCTTTCTTAAAAAAAAAA]
[+] EMBL AK064586 [CGGTGCAGATGAAACCACATGCGAAGAATGGACTATACCATGTAGGATTCTGCCTAACAAGAATCGCTCTGATCGTTGAACCATCTGGGTAGGTTGCACTGTATGGGATGGTGGCATTGTTGTTCGTCCAAAGAGAATTAATGTTGGCAATGGGGCTGGGATAATCAAAGGACCAAGAATGGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAGGCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTTGTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTGGGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGGATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAAACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGTGCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAGTGTATTAACCCAGGTAATTTCTGCAAACCAAGGTGCCGTTTGATCAGCTGACTACTTACTGCACAAACTGGGTCAGGAATCAGTGGGCCTTTGGTTTGTTAGTATAGACTTAAACAAATTGTTGGAAGGTAGTCATGTAGAGCACTAGTTATTAGCAGCCAATTGTAGTCATGCAGCGCACTCATGCAACCGTGCAGGTTCAACTTCTTCACCGACATCAGCAACCTGATGAATTTTGCACGCACGGTCGTTCTTCCCGTTGACATATTTGATAATCTCGATGCTGGTGTTTGCAAATCCTACATTTTGTACTTGTATATTTCAACAAGAAACTGGGTCGGTGAC ]
[-] EMBL CA761710 [ cCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTT GGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGGTAAACAATTGGACAATTGGATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAAACAATCTGCTGACGGCTGTTGATACTTGACATCCACTGCCACCTTTCAATGTAGTTCTGTGCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAGTGTATTAACCCAGGTAATTTCTGCAAACCAAGGTGCCGTTTGATCAGCTGACTACTTACTGCACAAACTGGGTCAGGAATCAGTGGGCCTTTGGTTTGTTAGTATAGACTTAAACAAATTGTTGGAAGGTAGTCATGTAGAGCACTAGTTATTAGCAGCCAATTGTAGTCATGCAGCGCACTCATGCAACCGTGCAGGTTCAACTTTTTTACCGACATAAGCAACCTGATGAATTTTGCACGCACGGTCGTTCTTCCCGTTGACATATATAATAATCTCGATGCTGGGGTTTGCAAATCTTACATTTTGTACTTGTATATTTCAACAAGAAACTGGGTCGGTGACTACTTACTAGAAGCAATGCTATTTGACCGTCATTCCTTTCTTAAAAAAAAAA]
consensusID : consensus_6052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[AAGAATGGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAGGCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTTGTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTGGGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGGATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAAACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGTGCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAGTGTATTAACCCAGTTNTGGTTGGCTAGCATCACGACTCTTTCTAAATCGTACAATCAAGATCAGCCGTGGCATTAT]
[+] EMBL CF304829 [AAGAATGGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAGGCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTTGTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTGGGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGGATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAAACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGTGCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAGTGTATTAACCCAGTTNTGGTTGGCTAGCATCACGACTCTTTCTAAATCGTACAATCAAGATCAGCCGTGGCATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6052#0 CGGTGCAGATGAAACCACATGCGAAGAATGGACTATACCATGTAGGATTCTGCCTAACAA 60
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 GAATCGCTCTGATCGTTGAACCATCTGGGTAGGTTGCACTGTATGGGATGGTGGCATTGT 120
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 TGTTCGTCCAAAGAGAATTAATGTTGGCAATGGGGCTGGGATAATCAAAGGACCAAGAAT 180
consensus_6052#1 ------------------------------------------------------AAGAAT 6
******
consensus_6052#0 GGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAG 240
consensus_6052#1 GGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAG 66
************************************************************
consensus_6052#0 GCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTT 300
consensus_6052#1 GCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTT 126
************************************************************
consensus_6052#0 GTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTG 360
consensus_6052#1 GTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTG 186
************************************************************
consensus_6052#0 GGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGG 420
consensus_6052#1 GGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGG 246
************************************************************
consensus_6052#0 ATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAA 480
consensus_6052#1 ATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAA 306
************************************************************
consensus_6052#0 ACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGT 540
consensus_6052#1 ACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGT 366
************************************************************
consensus_6052#0 GCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAG 600
consensus_6052#1 GCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAG 426
************************************************************
consensus_6052#0 TGTATTAACCCAGGTAATTTCTGCAAACCAAGGTGCCGTTTGATCAGCTGACTACTTACT 660
consensus_6052#1 TGTATTAACCCAG----TTNTGGTTGGCTAGCATCACGACT------CTTTCTA--AATC 474
************* ** * * * * ** * ** *** *
consensus_6052#0 GCACAAACTGGGTCAGGAATCAGTGGGCCTTTGGTTTGTTAGTATAGACTTAAACAAATT 720
consensus_6052#1 GTACAATCAAGATCAG----CCGTGGCATTAT---------------------------- 502
* **** * * **** * **** * *
consensus_6052#0 GTTGGAAGGTAGTCATGTAGAGCACTAGTTATTAGCAGCCAATTGTAGTCATGCAGCGCA 780
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 CTCATGCAACCGTGCAGGTTCAACTTCTTCACCGACATCAGCAACCTGATGAATTTTGCA 840
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 CGCACGGTCGTTCTTCCCGTTGACATATTTGATAATCTCGATGCTGGTGTTTGCAAATCC 900
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 TACATTTTGTACTTGTATATTTCAACAAGAAACTGGGTCGGTGACTACTTACTAGAAGCA 960
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 ATGCTATTTGACCGTCATTCCTTTCTTAAAAAAAAAA 997
consensus_6052#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||