Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6055 cluster # 6055       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6055#0 length = 1021 sequences # 3  

consensusID : consensus_6055#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1021
fasta sequence
                              [CACGATGGATCACACAAAGCTCTCTCAGCTGCTTCTCTTCACGGGCAGTAGATAAGAAGCAGCCACCCCTGCTCCGTGCCTTTGCATACACATGGTCATCTCCCATTTCACCTGCAAGCAAGCAAGCAAAGCAAGAAACCCAAACTTTTGGTCCAGACTCCAGAGAAGCCAAGTAGCCAACCCATGTGTGAGTCCTGGAAAGAATAGAACAGCTGCCTGCTTGCATTGTCTCCACGGTACAAGAGCTAGCTGAGCTCACACACGCTGAGAGAGTGAGAGTGAGAGGCAGCTAGCTAGAGAGAGCGATATTTCAGCTAAGCTCTCGTCTCGTCTTCTGGCAGATGCCCATGGGAGTTTTGGTTAGTGGTGGCTTGTGAGATCGGGGAGATCGAAGGCTTTACTGCAAGCTGATTCTTGCATGGCAAGAGCTCGATGGATTGGAGATGGAAGAAGACCAGCTGCTGCGCTGCCGCTTCTCGGCCTCTGTGCGTTTCTCTGCGCCGTTATGCTCGTCGTGTCGCTGGCTCCTCCTCCGGGGGAAGAAGAAGAAGAAGCAAAGGTGAGGTCGTCGTCGTTGCCAGCGGCGGCGACGTCGGTCCCGGCCGGTGGACGGCGCCTTCTGCTGCCGGCGGCGAGGACGAGGAGGTTCCGGCCACGGAGGTGGAACTCGGCCGGCATCGACGACAGCAAGCATGAGGTTCCGAGTGGCCCGAATCCAGATTCCAATAGATGATGATAGATAGATCCATGTCGTGTCCTGTTCTTCAGTGCTGCTTCTC-TCAGCTTGCAGTTTAGGTGTATTGTTCCCTGATCTCTCTTCTATTTTAGTATGGTTTTTCTTTTCGGCTTTGCTTTCGTTCAGGTAGGATTTGATAAAAATCCTTGGTAAGATAATGTACAAACAGATGGGCATTTACTCTAGATTACTACTCTCTGCTCATGTTCCATTGCATTGGATGATATATATGTCATTTCTGTCAAATGAGCATATTATAAATTTATAATTACAGATGGTAAAAAA]

[+] EMBL AK103377             [CACGATGGATCACACAAAGCTCTCTCAGCTGCTTCTCTTCACGGGCAGTAGATAAGAAGCAGCCACCCCTGCTCCGTGCCTTTGCATACACATGGTCATCTCCCATTTCACCTGCAAGCAAGCAAGCAAAGCAAGAAACCCAAACTTTTGGTCCAGACTCCAGAGAAGCCAAGTAGCCAACCCATGTGTGAGTCCTGGAAAGAATAGAACAGCTGCCTGCTTGCATTGTCTCCACGGTACAAGAGCTAGCTGAGCTCACACACGCTGAGAGAGTGAGAGTGAGAGGCAGCTAGCTAGAGAGAGCGATATTTCAGCTAAGCTCTCGTCTCGTCTTCTGGCAGATGCCCATGGGAGTTTTGGTTAGTGGTGGCTTGTGAGATCGGGGAGATCGAAGGCTTTACTGCAAGCTGATTCTTGCATGGCAAGAGCTCGATGGATTGGAGATGGAAGAAGACCAGCTGCTGCGCTGCCGCTTCTCGGCCTCTGTGCGTTTCTCTGCGCCGTTATGCTCGTCGTGTCGCTGGCTCCTCCTCCGGGGGAAGAAGAAGAAGAAGCAAAGGTGAGGTCGTCGTCGTTGCCAGCGGCGGCGACGTCGGTCCCGGCCGGTGGACGGCGCCTTCTGCTGCCGGCGGCGAGGACGAGGAGGTTCCGGCCACGGAGGTGGAACTCGGCCGGCATCGACGACAGCAAGCATGAGGTTCCGAGTGGCCCGAATCCAGATTCCAATAGATGATGATAGATAGATCCATGTCGTGTCCTGTTCTTCAGTGCTGCTTCTC TCAGCTTGCAGTTTAGGTGTATTGTTCCCTGATCTCTCTTCTATTTTAGTATGGTTTTTCTTTTCGGCTTTGCTTTCGTTCAGGTAGGATTTGATAAAAATCCTTGGTAAGATAATGTACAAACAGATGGGCATTTACTCTAGATTACTACTCTCTGCTCATGTTCCATTGCATTGGATGATATATATGT                                                    ]
[+] EMBL OSS0824A             [                                                                                                     CCCATTTCACCTGCAAGCAAGCAAGCAAAGCAAGAAACCCAAACTTTTGGTCCAGACTCCAGAGAAGCCAAGTAGCCAACCCATGTGTGAATCCTGGAAAGAATAGAACAGCTGCCTGCTTGCATTGTCTCCACGGTACAAGAGCTAGCTGAGCTCACACACGCTGAGAGAGTGAGAGTGAGAGGCAGCTAGCTAGAGAGAGCGATATTTCAGCTAAGCTCTCGTCTCGTCTTCTGGCAGgatt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU032997             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAGTGGCCCGAATCCAGATNCCAATAGATGATNATAGATAGATCCATGTCGTGTCCTGTTCTTCAGTGCTGCTTCTCNTCAGCTTGCAGTTTAGGTGTATTGTTCCNTGATC CTCTTCTATTTTAGTATGGTTTNTCTTTTCGGCTTTGCTNTCGTTCAGGTAGGATTTGATAAAAATCCTTGGTAAGATAATGTACAAACAGATGGGCATTTACTCTAGATTACTACTCTCTGCTCATGTTCCATTGCATTGGATGATATATATGTCATTTCTGTCAAATGAGCATATTATAAATTTATAATTACAGATGGTAAAAAA]


>consensus_6055#0 CACGATGGATCACACAAAGCTCTCTCAGCTGCTTCTCTTCACGGGCAGTAGATAAGAAGC AGCCACCCCTGCTCCGTGCCTTTGCATACACATGGTCATCTCCCATTTCACCTGCAAGCA AGCAAGCAAAGCAAGAAACCCAAACTTTTGGTCCAGACTCCAGAGAAGCCAAGTAGCCAA CCCATGTGTGAGTCCTGGAAAGAATAGAACAGCTGCCTGCTTGCATTGTCTCCACGGTAC AAGAGCTAGCTGAGCTCACACACGCTGAGAGAGTGAGAGTGAGAGGCAGCTAGCTAGAGA GAGCGATATTTCAGCTAAGCTCTCGTCTCGTCTTCTGGCAGATGCCCATGGGAGTTTTGG TTAGTGGTGGCTTGTGAGATCGGGGAGATCGAAGGCTTTACTGCAAGCTGATTCTTGCAT GGCAAGAGCTCGATGGATTGGAGATGGAAGAAGACCAGCTGCTGCGCTGCCGCTTCTCGG CCTCTGTGCGTTTCTCTGCGCCGTTATGCTCGTCGTGTCGCTGGCTCCTCCTCCGGGGGA AGAAGAAGAAGAAGCAAAGGTGAGGTCGTCGTCGTTGCCAGCGGCGGCGACGTCGGTCCC GGCCGGTGGACGGCGCCTTCTGCTGCCGGCGGCGAGGACGAGGAGGTTCCGGCCACGGAG GTGGAACTCGGCCGGCATCGACGACAGCAAGCATGAGGTTCCGAGTGGCCCGAATCCAGA TTCCAATAGATGATGATAGATAGATCCATGTCGTGTCCTGTTCTTCAGTGCTGCTTCTCT CAGCTTGCAGTTTAGGTGTATTGTTCCCTGATCTCTCTTCTATTTTAGTATGGTTTTTCT TTTCGGCTTTGCTTTCGTTCAGGTAGGATTTGATAAAAATCCTTGGTAAGATAATGTACA AACAGATGGGCATTTACTCTAGATTACTACTCTCTGCTCATGTTCCATTGCATTGGATGA TATATATGTCATTTCTGTCAAATGAGCATATTATAAATTTATAATTACAGATGGTAAAAA A



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)