These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2160 fasta sequence [CTCCTCTCCCACCTCCAGCGCCGCACCTCCACCTCCACCTCCCTCCCCGTCCCCGTCGTCAGCGTCGGCAACCTCACCTGGGGAGGGAATGGCAAGACCCCCATGGTCGACTTCCTCGCCCGCGCCTTCCACCGCATCGGCGTCTCGCCCCTCATCCTAACCAGGGGCTACGCAGGCGGCGATGAATCCAGGATGCTCCGNCGCCGNCTCTCCGATACCTCCGNCAAGATTGGTGTCGGTCCCAATAGAGCGGCTGTCGCTACCTCCATGCTCCGCAAATATGGTGCTCAAATTGGAGTCGNCATACTAGACGATGGGATGCAGCACCTCAGCTTGCTTCGAGATGTTGACATTGTCATGATCAACGCCCTCAATCCTTGGGGGAACAAACATCTCATTCCACGAGGACCCATGAGGGAACCACTCACTGCACTCACCAGAGCTCATATTCTCCTCATTCATCATGCTAACCTGGTTTCTCAACCACAACTTAAAACAATTCTTTCCACGGTCCACGACAATGGCGCAACATGTCCAGTCTTCTTTAGTAAATTGGTACCATCGCATATTTTTCAAGTCAACCAACCCATGCACAGGCTTCCTCTTCATGTGCTGCACGGTATAATCGTGCTATGCGTTTCTGCTATTGGCTGCCCAGATGCTTTCATTCATTCTGTTCAAGAGGTATTCCCACCTTTCTTGTTTTTATCACTTTGTCTACAAACTTTTGTCCTTGTCCTACCTATCATCAAATATGGAACGATGGTTGTTGTGAGGTTGTAATCCTTTTCATTATAAGGTAACCTATGCATTATTGCAATTTAATGCTACCAGGCTAACTGTTAATCAACCCCCACCTCCTCTGAAGAAATGAGTGATACAATGACAGATAAATCTGCAATAGAAAGAAGATAAAAAAAAAGATGTAATCCAAGTAACAAAATATGGTGTAGTTTCTCTGCTCCCAACTGGAGTATAAGAAATACCTTTTTTTTGCAAAGCTGCAAAAGGTGGCTGTCTTCCTTTAATGTTTACTATTAGAGCTCTCAGCTAAAACAAACAAGACAGTCAAATCACCACATGATTGGTACATTCTTTCTGGCTCATTTGCAATGCTTGCTTTTGGGTGTAGGCTTTTACTACATCCTGTCCAAAGTTGGTAATTCCATGGTTCAAAAATGATTGTGAATGGAGATATCTACCAAATATTGGATCTATGTGTTGCTCTGCTCAATTTTGGTTAATTCATGCCATGCTAGATTTAAACACAAATCTGAATTGAGTAGTCAGCTAATCCTTGTCATCAGGAAATTTTAGAATGTTATTCATTCATTGGCTGTAGATTGGCCCTCTCAAGATTGAAAGGTTGGATTTCAGCGATCACCATTCCTTCAGTTCTCATGTAAGTAACACCATATTGACATTGGCAGAGTGACCATTCCTTCAACAATTGAAGATGCACGCACTTTCAAAATGTGATTAGATTGAAAAGCTCAATGATACATAGTTTGAGCATGCGCATGCAAACCTTTCTTTCCAATGTATCTGTAATATTAACTGTTTCCTAAAATAAAGAGAACATATCTAATTGTTAGCTCAGTGGTACTAGTCTAGATGTTGCAACGCAGCATTTTTGTCAATCTATAGTTTCTTAGTGCTACCACTCTGTTGATTCTTACATGGTGATTGTTTTTCTCTCGTTGTTGCATACAATAGGACCTGCAGCTTATCCAAGACACGTTGAAGAAGCTTGTGTATCAGCACAAAAATAATGCTGTTGTCTTGGTTACAGAGAAGGATTATGACCGTGATCCAGATGTCCTTAGGGCACTGGATGCAAAGGTTTGGGTGTTGTCGTCTTGTCTGCAAATTATACCCCATGAGGGACAAGGAGATGATGAATTTATGAGGAAAGTGAGGGAGATTATTACAGCGAGTAGGCACGTGAAATTATAGGAGGGGGCCTAGCCAAGAGTTGCTGAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTGAGGCAAAACTATTTTGCCAGTAGGATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAATATGCATTATTGATCTAGTTGTATTTCCGTTGGATCAATGAATTAAAACCCCAATTTTAGC] [+] EMBL OSC21981 [CTCCTCTCCCACCTCCAGCGCCGCACCTCCACCTCCACCTCCCTCCCCGTCCCCGTCGTCAGCGTCGGCAACCTCACCTGGGGAGGGAATGGCAAGACCCCCATGGTCGACTTCCTCGCCCGCGCCTTCCACCGCATCGGCGTCTCGCCCCTCATCCTAACCAGGGGCTACGCAGGCGGCGATGAATCCAGGATGCTCCGNCGCCGNCTCTCCGATACCTCCGNCAAGATTGGTGTCGGTCCCAATAGAGCGGCTGTCGCTACCTCCATGCTCCGCAAATATGGTGCTCAAATTGGAGTCGNCATACTAGA ] [+] EMBL AK070220 [ TCTTTCTTTCCA GGGCTACGCAGGCGGCGATGAATCCAGGATGCTCCGCCGCCGCCTCTCCGATACCTCCGCCAAGATTGGTGTCGGTCCCAATAGAGCGGCTGTCGCTACCTCCATGCTCCGCAAATATGGTGCTCAAATTGGAGTCGCCATACTAGACGATGGGATGCAGCACCTCAGCTTGCTTCGAGATGTTGACATTGTCATGATCAACGCCCTCAATCCTTGGGGGAACAAACATCTCATTCCACGAGGACCCATGAGGGAACCACTCACTGCACTCACCAGAGCTCATATTCTCCTCATTCATCATGCTAACCTGGTTTCTCAACCACAACTTAAAACAATTCTTTCCACGGTCCACGACAATGGCGCAACATGTCCAGTCTTCTTTAGTAAATTGGTACCATCGCATATTTTTCAAGTCAACCAACCCATGCACAGGCTTCCTCTTCATGTGCTGCACGGTATAATCGTGCTATGCGTTTCTGCTATTGGCTGCCCAGATGCTTTCATTCATTCTGTTCAAGAGGTATTCCCACCTTTCTTGTTTTTATCACTTTGTCTACAAACTTTTGTCCTTGTCCTACCTATCATCAAATATGGAACGATGGTTGTTGTGAGGTTGTAATCCTTTTCATTATAAGGTAACCTATGCATTATTGCAATTTAATGCTACCAGGCTAACTGTTAATCAACCCCCACCTCCTCTGAAGAAATGAGTGATACAATGACAGATAAATCTGCAATAGAAAGAAGATAAAAAAAAAGATGTAATCCAAGTAACAAAATATGGTGTAGTTTCTCTGCTCCCAACTGGAGTATAAGAAATACCTTTTTTTTGCAAAGCTGCAAAAGGTGGCTGTCTTCCTTTAATGTTTACTATTAGAGCTCTCAGCTAAAACAAACAAGACAGTCAAATCACCACATGATTGGTACATTCTTTCTGGCTCATTTGCAATGCTTGCTTTTGGGTGTAGGCTTTTACTACATCCTGTCCAAAGTTGGTAATTCCATGGTTCAAAAATGATTGTGAATGGAGATATCTACCAAATATTGGATCTATGTGTTGCTCTGCTCAATTTTGGTTAATTCATGCCATGCTAGATTTAAACACAAATCTGAATTGAGTAGTCAGCTAATCCTTGTCATCAGGAAATTTTAGAATGTTATTCATTCATTGGCTGTAGATTGGCCCTCTCAAGATTGAAAGGTTGGATTTCAGCGATCACCATTCCTTCAGTTCTCATGTAAGTAACACCATATTGACATTGGCAGAGTGACCATTCCTTCAACAATTGAAGATGCACGCACTTTCAAAATGTGATTAGATTGAAAAGCTCAATGATACATAGTTTGAGCATGCGCATGCAAACCTTTCTTTCCAATGTATCTGTAATATTAACTGTTTCCTAAAATAAAGAGAACATATCTAATTGTTAGCTCAGTGGTACTAGTCTAGATGTTGCAACGCAGCATTTTTGTCAATCTATAGTTTCTTAGTGCTACCACTCTGTTGATTCTTACATGGTGATTGTTTTTCTCTCGTTGTTGCATACAATAGGACCTGCAGCTTATCCAAGACACGTTGAAGAAGCTTGTGTATCAGCACAAAAATAATGCTGTTGTCTTGGTTACAGAGAAGGATTATGACCGTGATCCAGATGTCCTTAGGGCACTGGATGCAAAGGTTTGGGTGTTGTCGTCTTGTCTGCAAATTATACCCCATGAGGGACAAGGAGATGATGAATTTATGAGGAAAGTGAGGGAGATTATTACAGCGAGTAGGCACGTGAAATTATAGGAGGGGGCCTAGCCAAGAGTTGCTGAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTGAGGCAAAACTATTTTGCCAGTAGGATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAATATGCATTATTGATCTAGTTGTATTTCCGTTGGATCAATGAATTAAAACCCCAATTTTAGC] consensusID : consensus_6056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 214 fasta sequence [GCCAAGAGTTGCTGAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTAAGGCAAAACTATTTTNCCAGTAGGATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAATATGCATTATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAANAANAAANNATNN] [+] EMBL AU094158 [GCCAAGAGTTGCTGAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTAAGGCAAAACTATTTTNCCAGTAGGATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAATATGCATTATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAANAANAAANNATNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6056#0 CTCCTCTCCCACCTCCAGCGCCGCACCTCCACCTCCACCTCCCTCCCCGTCCCCGTCGTC 60 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 AGCGTCGGCAACCTCACCTGGGGAGGGAATGGCAAGACCCCCATGGTCGACTTCCTCGCC 120 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 CGCGCCTTCCACCGCATCGGCGTCTCGCCCCTCATCCTAACCAGGGGCTACGCAGGCGGC 180 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 GATGAATCCAGGATGCTCCGNCGCCGNCTCTCCGATACCTCCGNCAAGATTGGTGTCGGT 240 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 CCCAATAGAGCGGCTGTCGCTACCTCCATGCTCCGCAAATATGGTGCTCAAATTGGAGTC 300 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 GNCATACTAGACGATGGGATGCAGCACCTCAGCTTGCTTCGAGATGTTGACATTGTCATG 360 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 ATCAACGCCCTCAATCCTTGGGGGAACAAACATCTCATTCCACGAGGACCCATGAGGGAA 420 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 CCACTCACTGCACTCACCAGAGCTCATATTCTCCTCATTCATCATGCTAACCTGGTTTCT 480 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 CAACCACAACTTAAAACAATTCTTTCCACGGTCCACGACAATGGCGCAACATGTCCAGTC 540 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TTCTTTAGTAAATTGGTACCATCGCATATTTTTCAAGTCAACCAACCCATGCACAGGCTT 600 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 CCTCTTCATGTGCTGCACGGTATAATCGTGCTATGCGTTTCTGCTATTGGCTGCCCAGAT 660 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 GCTTTCATTCATTCTGTTCAAGAGGTATTCCCACCTTTCTTGTTTTTATCACTTTGTCTA 720 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 CAAACTTTTGTCCTTGTCCTACCTATCATCAAATATGGAACGATGGTTGTTGTGAGGTTG 780 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TAATCCTTTTCATTATAAGGTAACCTATGCATTATTGCAATTTAATGCTACCAGGCTAAC 840 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TGTTAATCAACCCCCACCTCCTCTGAAGAAATGAGTGATACAATGACAGATAAATCTGCA 900 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 ATAGAAAGAAGATAAAAAAAAAGATGTAATCCAAGTAACAAAATATGGTGTAGTTTCTCT 960 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 GCTCCCAACTGGAGTATAAGAAATACCTTTTTTTTGCAAAGCTGCAAAAGGTGGCTGTCT 1020 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TCCTTTAATGTTTACTATTAGAGCTCTCAGCTAAAACAAACAAGACAGTCAAATCACCAC 1080 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 ATGATTGGTACATTCTTTCTGGCTCATTTGCAATGCTTGCTTTTGGGTGTAGGCTTTTAC 1140 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TACATCCTGTCCAAAGTTGGTAATTCCATGGTTCAAAAATGATTGTGAATGGAGATATCT 1200 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 ACCAAATATTGGATCTATGTGTTGCTCTGCTCAATTTTGGTTAATTCATGCCATGCTAGA 1260 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TTTAAACACAAATCTGAATTGAGTAGTCAGCTAATCCTTGTCATCAGGAAATTTTAGAAT 1320 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 GTTATTCATTCATTGGCTGTAGATTGGCCCTCTCAAGATTGAAAGGTTGGATTTCAGCGA 1380 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TCACCATTCCTTCAGTTCTCATGTAAGTAACACCATATTGACATTGGCAGAGTGACCATT 1440 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 CCTTCAACAATTGAAGATGCACGCACTTTCAAAATGTGATTAGATTGAAAAGCTCAATGA 1500 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TACATAGTTTGAGCATGCGCATGCAAACCTTTCTTTCCAATGTATCTGTAATATTAACTG 1560 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TTTCCTAAAATAAAGAGAACATATCTAATTGTTAGCTCAGTGGTACTAGTCTAGATGTTG 1620 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 CAACGCAGCATTTTTGTCAATCTATAGTTTCTTAGTGCTACCACTCTGTTGATTCTTACA 1680 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TGGTGATTGTTTTTCTCTCGTTGTTGCATACAATAGGACCTGCAGCTTATCCAAGACACG 1740 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TTGAAGAAGCTTGTGTATCAGCACAAAAATAATGCTGTTGTCTTGGTTACAGAGAAGGAT 1800 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TATGACCGTGATCCAGATGTCCTTAGGGCACTGGATGCAAAGGTTTGGGTGTTGTCGTCT 1860 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 TGTCTGCAAATTATACCCCATGAGGGACAAGGAGATGATGAATTTATGAGGAAAGTGAGG 1920 consensus_6056#1 ------------------------------------------------------------ consensus_6056#0 GAGATTATTACAGCGAGTAGGCACGTGAAATTATAGGAGGGGGCCTAGCCAAGAGTTGCT 1980 consensus_6056#1 -----------------------------------------------GCCAAGAGTTGCT 13 ************* consensus_6056#0 GAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTGAGGCAAAACTATTTTGCCAGTAGG 2040 consensus_6056#1 GAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTAAGGCAAAACTATTTTNCCAGTAGG 73 *********************************** *************** ******** consensus_6056#0 ATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAAT 2100 consensus_6056#1 ATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAAT 133 ************************************************************ consensus_6056#0 ATGCATTATTGATCTAGTTGTATTTCCGTTGGATCAATGAATTAAAACCCCAATTTTAGC 2160 consensus_6056#1 ATGCATTATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAA 193 ************* * * * ** ** **** ** consensus_6056#0 --------------------- consensus_6056#1 AAAAAAAANAANAAANNATNN 214 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||