cluster # 6066

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Oryza sativa
cluster # 6066 cluster # 6066 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6066#0 length = 1098 sequences # 2

consensus_6066#1 length = 620 sequences # 1

consensusID : consensus_6066#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1098
fasta sequence

                              [GCTCTCCGAAAAAAAAAAGGGGGAAAAAAAAAGCTCTTTTCCTCTCCTCGCGTCCATCCGCGATCCACCACCTCCTCCTCCCGTCTCCGGCGACCGCCGCCGCGCCATTACACCCAGACGCGCCGGTCTCCTCTCGGCACCGGCCGGCCTAGTCGACCGCAGAAGCGGAGGTGTGACCGGAGCGGAGGTCGTCGGTCAAATCCACTCCGGGGGTTTCTTGAATTCTTGGGAGCAGAGAGGCAAAAGTGAGGCAGCAGCCATGTCCATCGAGCTCATCCTGTGGCTCTTCTCCTTCGCCTCCATCATGGTCCTCATCGGCCTCACCGCCTACCAGCTTATATGTTTATCTGATTTGGAGTTTGATTATATCAACCCATACGATTCTTCATCTCGCATCAACTCAGTGGTCCTTATAGAATACGCACTCCAAGGGGCCTTGTGCGCTTCTTTCCTCTTGACACTGCATTGGTTCCCGTTTCTAGTTATGGCACCAGTAGCATACTACCATGGCAAATTGTATATGGATCGGAAACACCTTGTAGATGTTACCGAGATATTCCGGCAACTCAATTGGGAGAAAAAATACAGGATGATCAAGCTTGCATTCTACTTTAGTTTGTTTATTATAACGATCTACAGGCTTGTGATGACGGCTGTGACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTACCAACTTTTCACACACAGATGGCTAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCATCTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGTAGTTTTATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACTGAATTGTCTATAAAACTGGC]

[+] EMBL AK060944             [GCTCTCCGAAAAAAAAAAGGGGGAAAAAAAAAGCTCTTTTCCTCTCCTCGCGTCCATCCGCGATCCACCACCTCCTCCTCCCGTCTCCGGCGACCGCCGCCGCGCCATTACACCCAGACGCGCCGGTCTCCTCTCGGCACCGGCCGGCCTAGTCGACCGCAGAAGCGGAGGTGTGACCGGAGCGGAGGTCGTCGGTCAAATCCACTCCGGGGGTTTCTTGAATTCTTGGGAGCAGAGAGGCAAAAGTGAGGCAGCAGCCATGTCCATCGAGCTCATCCTGTGGCTCTTCTCCTTCGCCTCCATCATGGTCCTCATCGGCCTCACCGCCTACCAGCTTATATGTTTATCTGATTTGGAGTTTGATTATATCAACCCATACGATTCTTCATCTCGCATCAACTCAGTGGTCCTTATAGAATACGCACTCCAAGGGGCCTTGTGCGCTTCTTTCCTCTTGACACTGCATTGGTTCCCGTTTCTAGTTATGGCACCAGTAGCATACTACCATGGCAAATTGTATATGGATCGGAAACACCTTGTAGATGTTACCGAGATATTCCGGCAACTCAATTGGGAGAAAAAATACAGGATGATCAAGCTTGCATTCTACTTTAGTTTGTTTATTATAACGATCTACAGGCTTGTGATGACGGCTGTGACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTACCAACTTTTCACACACAGATGGCTAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCATCTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGTAGTTTTATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACTGAATTGTCTATAAAACTGGC]
[+] EMBL CB636149             [                                                       ATCCGCGATCCACCACCTCCTCCTCCCGTCTCCGGCGACCGCCGCCGCGCCATTACACCCAGACGCGCCGGTCTCCTCTCGGCACCGGCCGGCCTAGTCGACCGCAGAAGCGGAGGTGTGACCGGAGCGGAGGTCGTCGGTCAAATCCACTCCGGGGGTTTCTTGAATTCTTGGGAGCAGAGAGGCAAAAGTGAGGCAGCAGCCATGTCCATCGAGCTCATCCTGTGGCTCTTCTCCTTCGCCTCCATCATGGTCCTCATCGGCCTCACCGCCTACCAGCTTATATGTTTATCTGATTTGGAGTTTGATTATATCAACCCATACGATTCTTCATCTCGCATCAACTCAGTGGTCCTTATAGAATACGCACTCCAAGGGGCCTTGTGCGCTTCTTTCCTCTTGACACTGCATTGGTTCCCGTTTCTAGTTATGGCACCAGTAGCATACTACCATGGCAAATTGTATATGGATCGGAAACACCTTGTAGATGTTACCGAGATATTCCGGCAACTCAATTGGGAGAAAAAATACAGGATGATCAAGCTTGCATTCTACTTTAGTTTGTTTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_6066#0
GCTCTCCGAAAAAAAAAAGGGGGAAAAAAAAAGCTCTTTTCCTCTCCTCGCGTCCATCCG
CGATCCACCACCTCCTCCTCCCGTCTCCGGCGACCGCCGCCGCGCCATTACACCCAGACG
CGCCGGTCTCCTCTCGGCACCGGCCGGCCTAGTCGACCGCAGAAGCGGAGGTGTGACCGG
AGCGGAGGTCGTCGGTCAAATCCACTCCGGGGGTTTCTTGAATTCTTGGGAGCAGAGAGG
CAAAAGTGAGGCAGCAGCCATGTCCATCGAGCTCATCCTGTGGCTCTTCTCCTTCGCCTC
CATCATGGTCCTCATCGGCCTCACCGCCTACCAGCTTATATGTTTATCTGATTTGGAGTT
TGATTATATCAACCCATACGATTCTTCATCTCGCATCAACTCAGTGGTCCTTATAGAATA
CGCACTCCAAGGGGCCTTGTGCGCTTCTTTCCTCTTGACACTGCATTGGTTCCCGTTTCT
AGTTATGGCACCAGTAGCATACTACCATGGCAAATTGTATATGGATCGGAAACACCTTGT
AGATGTTACCGAGATATTCCGGCAACTCAATTGGGAGAAAAAATACAGGATGATCAAGCT
TGCATTCTACTTTAGTTTGTTTATTATAACGATCTACAGGCTTGTGATGACGGCTGTGAC
GTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTACC
AACTTTTCACACACAGATGGCTAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGG
TGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATC
GCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCATCT
CAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGTAGTTTTA
TGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTT
TGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACTGA
ATTGTCTATAAAACTGGC

consensusID : consensus_6066#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CTAAGTCGCTATTGCATAAGCTACTATTTGCATATTCGTTCCATCTGACAGGCTTGTGATGACGGCTGTGACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTACCAACTTTTCACACACAGATGGCTAGGTATTTCAGTCTCAGAACTTGTCATGTATCACTTTCTTTTTTGCGGAGATACCTGTTCGGTAACTGACTTTGGTCCTGCTTTTCTTTTGCAAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCATCTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGAAGTTTTATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACTGAATTGTCTATAAAACTGGCTCATATAGGATGTGTTT]

[-] EMBL CB636150             [CTAAGTCGCTATTGCATAAGCTACTATTTGCATATTCGTTCCATCTGACAGGCTTGTGATGACGGCTGTGACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTACCAACTTTTCACACACAGATGGCTAGGTATTTCAGTCTCAGAACTTGTCATGTATCACTTTCTTTTTTGCGGAGATACCTGTTCGGTAACTGACTTTGGTCCTGCTTTTCTTTTGCAAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCATCTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGAAGTTTTATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACTGAATTGTCTATAAAACTGGCTCATATAGGATGTGTTT]




>consensus_6066#1
CTAAGTCGCTATTGCATAAGCTACTATTTGCATATTCGTTCCATCTGACAGGCTTGTGAT
GACGGCTGTGACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTA
GAGTTTGCTACCAACTTTTCACACACAGATGGCTAGGTATTTCAGTCTCAGAACTTGTCA
TGTATCACTTTCTTTTTTGCGGAGATACCTGTTCGGTAACTGACTTTGGTCCTGCTTTTC
TTTTGCAAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGGTGTGCATCATTGAAC
AGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATCGCTCTGGCTTTCAGA
GAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCATCTCAGCATTATCATTTT
AACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGAAGTTTTATGCGTTTTGAGTGTG
CTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTTTGGCAATCACTGATT
CATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACTGAATTGTCTATAAAACT
GGCTCATATAGGATGTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6066#0      GCTCTCCGAAAAAAAAAAGGGGGAAAAAAAAAGCTCTTTTCCTCTCCTCGCGTCCATCCG 60
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      CGATCCACCACCTCCTCCTCCCGTCTCCGGCGACCGCCGCCGCGCCATTACACCCAGACG 120
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      CGCCGGTCTCCTCTCGGCACCGGCCGGCCTAGTCGACCGCAGAAGCGGAGGTGTGACCGG 180
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      AGCGGAGGTCGTCGGTCAAATCCACTCCGGGGGTTTCTTGAATTCTTGGGAGCAGAGAGG 240
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      CAAAAGTGAGGCAGCAGCCATGTCCATCGAGCTCATCCTGTGGCTCTTCTCCTTCGCCTC 300
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      CATCATGGTCCTCATCGGCCTCACCGCCTACCAGCTTATATGTTTATCTGATTTGGAGTT 360
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      TGATTATATCAACCCATACGATTCTTCATCTCGCATCAACTCAGTGGTCCTTATAGAATA 420
consensus_6066#1      ------------------------------------------------------------
                                                                                  

consensus_6066#0      CGCACTCCAAGGGGCCTTGTGCGCTTCTTTCCTCTTGACACTGCATTGGTTCCCGTTTCT 480
consensus_6066#1      ---------------------------------------------CTAAGT--CGCTATT 13
                                                                    *   *  ** *  *

consensus_6066#0      AGTTATGGCACCAGTAGCATACTACCATGGCAAATTGTATATGGATCGGAAACACCTTGT 540
consensus_6066#1      GCATAAGCTACTATTTGCATATT--CGTTCCATCTGACAGGCTTGTGATGACGGCTGTGA 71
                         ** *  ** * * ***** *  * *  **  *   *      *    *   *  ** 

consensus_6066#0      AGATGTTACCGAGATATTCCGGCAACTCAATTGGGAGAAAAAATACAGGATGATCAA-GC 599
consensus_6066#1      CGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTAC 131
                       * * **        *    *  **     ***  *  * ** **      * *     *

consensus_6066#0      TTGCATTCTACTT-TAGTTTGTTTATTATAACGATCTACAGGCTTGTGATGACGGCTGTG 658
consensus_6066#1      CAACTTTTCACACACAGATGGCTAGGTATTTCAGTCTCAGAACTTGTCATG-----TATC 186
                         * **  **    ** * * *   ***  *  ***     ***** ***     * * 

consensus_6066#0      ACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTA 718
consensus_6066#1      ACTTTCTTTTTTG-CGGAGATACCTGTTCGGT---------AACT-----GACTTTGGT- 230
                      ** ** **  ***  *  *** *   *  ***         ****     ** **** * 

consensus_6066#0      CCAACTTTTCACACACAGATGGCTAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGT 778
consensus_6066#1      CCTGCTTTTCTT-------TTGCAAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGT 283
                      **  ******         * ** ************************************

consensus_6066#0      GGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACA 838
consensus_6066#1      GGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACA 343
                      ************************************************************

consensus_6066#0      TCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCAT 898
consensus_6066#1      TCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCAT 403
                      ************************************************************

consensus_6066#0      CTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGTAGTTT 958
consensus_6066#1      CTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGAAGTTT 463
                      ****************************************************** *****

consensus_6066#0      TATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACT 1018
consensus_6066#1      TATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACT 523
                      ************************************************************

consensus_6066#0      TTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACT 1078
consensus_6066#1      TTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACT 583
                      ************************************************************

consensus_6066#0      GAATTGTCTATAAAACTGGC----------------- 1098
consensus_6066#1      GAATTGTCTATAAAACTGGCTCATATAGGATGTGTTT 620
                      ********************