These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 274 fasta sequence [AATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTCAAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCAGAGTTCAGCCCGCGTTGTTTTCGACTTCTTGAGCTGGAAAGTTCAGTTGCATAAAGAAAATTCAGGTGTACTCGGTGTGAAACTTTTGATGTTGTTTGGATATAAACAAAAACCAAAGTTCGGCCCCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU076091 [AATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTCAAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCAGAGTTCAGCCCGCGTTGTTTTCGACTTCTTGAGCTGGAAAGTTCAGTTGCATAAAGAAAATTCAGGTGTACTCGGTGTGAAACTTTTGATGTTGTTTGGATATAAACAAAAACCAAAGTTCGGCCCCAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB966840 [ GTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCCAAGTTCAGCCCGCGTTGTTTTCGACTTCTTGAGCTGGAAAGTTCAGTTG ] consensusID : consensus_6077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [TGAGCAGAGGTGGGGGCTGTTCATCGCGACCAAGTGATGAATCAAGATGCGCAGCGTGGGGGGGACTCGCAAATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTCAAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCAAAGTTCAGCCCGCGTTGTTTTCGACTTCTAAAAAAAAAAA] [-] EMBL CA762802 [TGAGCAGAGGTGGGGGCTGTTCATCGCGACCAAGTGATGAATCAAGATGCGCAGCGTGGGGGGGACTCGCAAATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTCAAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCAAAGTTCAGCCCGCGTTGTTTTCGACTTCTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6077#0 ------------------------------------------------------------ consensus_6077#1 TGAGCAGAGGTGGGGGCTGTTCATCGCGACCAAGTGATGAATCAAGATGCGCAGCGTGGG 60 consensus_6077#0 -----------AATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTC 49 consensus_6077#1 GGGGACTCGCAAATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTC 120 ************************************************* consensus_6077#0 AAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAA 109 consensus_6077#1 AAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAA 180 ************************************************************ consensus_6077#0 AAAACAAAAATAACCAGAGTTCAGCCCGCGTTGTTTTCGACTTCTTGAGCTGGAAAGTTC 169 consensus_6077#1 AAAACAAAAATAACCAAAGTTCAGCCCGCGTTGTTTTCGACTTCTAAAAAAAAAAA---- 236 **************** **************************** * *** consensus_6077#0 AGTTGCATAAAGAAAATTCAGGTGTACTCGGTGTGAAACTTTTGATGTTGTTTGGATATA 229 consensus_6077#1 ------------------------------------------------------------ consensus_6077#0 AACAAAAACCAAAGTTCGGCCCCAAAAAAAAAAAAAAAAAAAAAA 274 consensus_6077#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||