cluster # 608

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Oryza sativa
cluster # 608 cluster # 608 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_608#0 length = 410 sequences # 1

consensus_608#1 length = 207 sequences # 1

consensusID : consensus_608#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [GNCNCTNTGGGCNANCCTCCAGAACCAAAGCCACTCTTTTTCCACGNCACCAAAGGCCACTNCGTGCNCCGTGGGCACAATTAACCATTGATTAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTTTGGCCTGTTTTTCGTCATGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCANTTCCANTGCATGTTCCTGCATNTTTNGNATGGTGATTGNCGCAAGGGGCCAAACATTTNTTCCCGAAACGNGGTCATTTCTGGGGTANCATTNGAGCATAACCGTNGGNGGNTAGTATTACCTGGCCCAGACATCTTTTCCCCCCNCAGTAACAACANGTGGACCCTNCGCCAGGGTTTTTTTCACCTGNTGTTGACANCTCATCNCGTNNATCAA]

[+] EMBL AA751492             [GNCNCTNTGGGCNANCCTCCAGAACCAAAGCCACTCTTTTTCCACGNCACCAAAGGCCACTNCGTGCNCCGTGGGCACAATTAACCATTGATTAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTTTGGCCTGTTTTTCGTCATGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCANTTCCANTGCATGTTCCTGCATNTTTNGNATGGTGATTGNCGCAAGGGGCCAAACATTTNTTCCCGAAACGNGGTCATTTCTGGGGTANCATTNGAGCATAACCGTNGGNGGNTAGTATTACCTGGCCCAGACATCTTTTCCCCCCNCAGTAACAACANGTGGACCCTNCGCCAGGGTTTTTTTCACCTGNTGTTGACANCTCATCNCGTNNATCAA]




>consensus_608#0
GNCNCTNTGGGCNANCCTCCAGAACCAAAGCCACTCTTTTTCCACGNCACCAAAGGCCAC
TNCGTGCNCCGTGGGCACAATTAACCATTGATTAAACACCCCACCGCATTCCAGACGTGC
CGCCATCTGTTTGGCCTGTTTTTCGTCATGGTAAAAATGGTCGCTGAAAGGCCGAACTCA
CTATCATTAGCCANTTCCANTGCATGTTCCTGCATNTTTNGNATGGTGATTGNCGCAAGG
GGCCAAACATTTNTTCCCGAAACGNGGTCATTTCTGGGGTANCATTNGAGCATAACCGTN
GGNGGNTAGTATTACCTGGCCCAGACATCTTTTCCCCCCNCAGTAACAACANGTGGACCC
TNCGCCAGGGTTTTTTTCACCTGNTGTTGACANCTCATCNCGTNNATCAA

consensusID : consensus_608#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 207
fasta sequence

                              [TGTGTAAGCCGAAATGGGAAABCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTYBTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGBCCGAACTCACTATCATTAGCCAGTTCCAGTGCATG]

[+] EMBL AA751290             [TGTGTAAGCCGAAATGGGAAABCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTYBTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGBCCGAACTCACTATCATTAGCCAGTTCCAGTGCATG]




>consensus_608#1
TGTGTAAGCCGAAATGGGAAABCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGG
CCACTCGCGCGTYBTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGC
CGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGBCCGAACTC
ACTATCATTAGCCAGTTCCAGTGCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_608#0      -------GNCNCTNTGGGCNANCCTCCAGAACCAAAGCCACTCTTTTTCCACGNCACCAA 53
consensus_608#1      TGTGTAAGCCGAAATGGGAAABC--TCACGACCAAAGCCACTCTTTTTC-ACGCCACCAA 57
                            * *    ****  * *   **  ******************* *** ******

consensus_608#0      AGGCCACTNCGTGCNCCGTGGGCACAATTAACCATTGATTAAACACCCCACCGCATTCCA 113
consensus_608#1      AGGCCACTC-GCGCGTYBTGG-CACAAT-AACCATTGAT-AAACACCCCACCGCATTCCA 113
                     ********  * **    *** ****** ********** ********************

consensus_608#0      GACGTGCCGCCATCTGTTTGGCCTGTTTTTCGTCA-TGGTAAAAATGGTCGCTGAAAGGC 172
consensus_608#1      GACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGBC 173
                     ***************** ******** ******** ********************** *

consensus_608#0      CGAACTCACTATCATTAGCCANTTCCANTGCATGTTCCTGCATNTTTNGNATGGTGATTG 232
consensus_608#1      CGAACTCACTATCATTAGCCAGTTCCAGTGCATG-------------------------- 207
                     ********************* ***** ******                          

consensus_608#0      NCGCAAGGGGCCAAACATTTNTTCCCGAAACGNGGTCATTTCTGGGGTANCATTNGAGCA 292
consensus_608#1      ------------------------------------------------------------
                                                                                 

consensus_608#0      TAACCGTNGGNGGNTAGTATTACCTGGCCCAGACATCTTTTCCCCCCNCAGTAACAACAN 352
consensus_608#1      ------------------------------------------------------------
                                                                                 

consensus_608#0      GTGGACCCTNCGCCAGGGTTTTTTTCACCTGNTGTTGACANCTCATCNCGTNNATCAA 410
consensus_608#1      ----------------------------------------------------------