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Oryza sativa
cluster # 6090 cluster # 6090       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6090#0 length = 3361 sequences # 1  
 consensus_6090#1 length = 401 sequences # 2  
consensusID : consensus_6090#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 3361
fasta sequence 
                              [GAACCTCTGCTTCCAGGAAAGCCGCACCGATTGATCCCTTCTCTGTGTCTGCCTTGCTGCCCGCGACGTGTTTGTGGATATGCCTGCCCGGTTCTTATGGTTTAATCATGCTGCTCTGGTTTGGGGCTTTTGGATGGATGATGGGCAGCCATCGATTTCATCTGTGTTCTTGGGGGGGTGGGAGGCATATGGTTGATGGTTTTTGGTGGTGGCATCTGATTCTTGTCTCTTTGGCTGCGGGTGCAGAGGCGGAACCTGAAGACGAACGTCGGCATCACCGTCTTCCCGATCCTCATCTGCGTGCTGCTCGTCGTGCTTCAGAACGTGATCAACGGGGAGCTCGACAAGCCCAAGTACCAGTGCGGCTGCGAATGCACCGAGAGTGACCTGGATGGGACCTGCCTGCGGAAGGAGTGCGGCATCCAGCACTCGACGCTGGAGCAGGTATGGAGCTGCGAGGTGCCCAGCCCACCACGGTGGCCGGCCCTGATTCAGGTCCCCTGGCCAGGGTTCCGGGCTGTCGGGACCGCATCGCAGCCGTTCGACGATTTGCCTAACCCATTGTGCCGTGGCGACGGGTCTTGCCCTGTCACTCTCCTCGTCACTGGAGAGAACCAAACATTAGCTGAGCGTGTTTCAGGTCGGGTGTTTCCTGCCCTTTATCCGTTGCCTAATGTGACAGACTACCTGATGCCTCCTCCCTTTTCTCCCTCTCATGTGACAGACTATCTTGATATCCTCTCCAGGATAGTTGTTGGTTCAGACACACAGCCATGGTATACCCAATTGCTAGAGCCCGCTTTTTCCTCTGGTAAAACTTTGCATCTTCTCCAGCCTCGTTGCATGCCCTTCATGTTTGGGACCATTCCATACAATGCAGGGGGCGTACCCTTACATATCGATATACAGTGTATTGAAGTTCAGATGTTGTGGCGTGAAAGTGCATCAGTTATCAACTATGAACTGTTTAAGGGTTACGTACAAAGAGGAGGAGAAACAAATGAGTTTGTTGCAGGTTATGACTTCTTGAACACGACAGGATATGACCGCAATATAAATGTTTGGTACAACTCTACTTATAATGATAACACTGCATATTCATTTATCGCAGCATTACGAGTTCCACGATTGGTGAATGCAATATCCAATGCATACCTAAAATTTATCAGAGGAAGTGGGGTGGATATGCTGCTTGAATATGTAAAAGAGATGCCCAAAGTTGGAACAAGGTTTAGGCTTGATCTCTCTTCTCTTCTCAGTGTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTTATGTTGACATATCTGGTGTATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCTGAAGGATGGGCCTTACTGGCTAATTTCTTATGCTTATTTCTTTGCTCTATCGGTTATCTATATGACATTTTTTGTGATTTTTGGCTCCTTAATTGGTAATTTTCTTCCAATCTATTTTCACGAAGATTGCACTTGCATTTTGTGGCATCTTTCTTTTCATCTGTCAAGACAGCCACTGTGATTGGATACATTTATGTATTTGGCTCTGGCTTGCTAGGGGCATTTCTTTTTCGTTTCTTTGTTGAGGACAGGACCTTTCCCAATGGTTGGTTGTTAGTAATGGAGATTGTCCCAGGATTTTCCCTCTATCGAGGACTATATGAACTTGGCCAATATGCTTTCTCTGGAAGTGCTATGGGAGCCTCTGGCATGACATGGGGAAATTTGAGAGACCCAATCAATGGAATGTGTGGTATATTTATCATCATGACAGTAGAATGGGCATTTCTCCTTATGTTAGCATTCTATTTGGATCAAGTCTCTCCAGTAGGTGGTGGTGTCAGGAAAAGGCCCTTATTCTTCTTCAGGTGTTTACAGAAGAAGCACACACCGTCATTGCAGAAGCCTAGCTTTGTGCAACAGGGTTCTAAAGTAATTGTCGATATGGAGAAGCCAGATGTTGCTCAAGAAAGAGAAGTAGTTGAGCAACTTTTGGTAGGCCGCAATGCAAATCAAGCTATTATATGTCACAACCTCAAGAAGATCTATCCTGGAAGGGATGGAAACCCTGATAAGCTGGCGGTTCGAGGATTATCTCTTGCCGTACCAAAAGGGCAGTGCTTTGGAATGCTTGGCCCAAATGGAGCTGGGAAAACATCCTTCATTAGTATGATGATTGGGCTTGTTAAACCTACATCTGGTACTTCCTATGTTCATGGAATGGATATCAATATGGATATGGATCACATATATACAAACATGGGGGTGTGCCCACAGCATGACTTACTTTGGGAACCATTGACTGGAAAAGAACATCTGTTCTTTTATGGCAGGCTGAAGAATCTTAAAGGTGCTGTGTTGGTGAAGGCTGTTGAGGATGCTCTGAAGAGCGTAAATCTGTTCCATGGTGGTGTTGGTGATAAGCAAGTGGGAAAGTACAGCGGAGGCATGAAAGGAAGGCTCAGTGTGGCAATATCATTGATTGGAGACCCCAAAGTCGTTTTCATGGATGAACCAAGCACTGGGCTAGACCCCGCATCAAGAAATAACTTGTGGAATGTTGTGAAGGAGGCCAAGCGAAACCGTGCGATCGTTCTTACTACGCACTCGATGGAGGAGGCTGAAGTACTTTGTGATCGACTTGGCATCTTTGTCGATGGCGATTTCCAATGTCTTGGAAATCCTAAGGAGCTAAAGGCGAGATATGGGGGAGCATACATATTCACAATGACAACATCTCCAGACCAAGAACAAGAGGTTGAACGGCTAGTTCATGACTTGTCTCCGAGCGCAAATAAGATCTACCACCTATCTGGAACTCAAAAGTTCGAGCTGCCAAAGCAAGAGGTGAAAATAGCCGAGGTATTTCGCGCAGTTGAGGATGCGAAGAAACGGTTCACCGTGCATGCCTGGGGCCTGGTTGATACCACCTTGGAGGATGTCTTCATAAAGCATATATGATTCTTTAAAGTTCGAGCTGCCAAAGCAAGAGGTGAAAATAGCCGAGGTATTTCGCGCAGTTGAGGATGCGAAGAAACGGTTCACCGTGCATGCCTGGGGCCTGGTTGATACCACCTTGGAGGATGTCTTCATAAAGGTTGCCAAGGGAGCAAAGGCATCCAGTGATAATAGTTAGTTTGTGCATTGATAATATTGTGAGATTTATAGGCCGACTAATATTCTTTTATGTCTTGACTTTAGCATATATGATTCTTTTGTGGTTGTACAGAAACATATTATTCTCATACATCAGAAAAAAAAGTAACCATATGTAACATTTTTGTTTATTTTAAATGTACAAATGACTCAATATATCATTGCAGATATGCGGGAAT]

[+] EMBL AK119274             [GAACCTCTGCTTCCAGGAAAGCCGCACCGATTGATCCCTTCTCTGTGTCTGCCTTGCTGCCCGCGACGTGTTTGTGGATATGCCTGCCCGGTTCTTATGGTTTAATCATGCTGCTCTGGTTTGGGGCTTTTGGATGGATGATGGGCAGCCATCGATTTCATCTGTGTTCTTGGGGGGGTGGGAGGCATATGGTTGATGGTTTTTGGTGGTGGCATCTGATTCTTGTCTCTTTGGCTGCGGGTGCAGAGGCGGAACCTGAAGACGAACGTCGGCATCACCGTCTTCCCGATCCTCATCTGCGTGCTGCTCGTCGTGCTTCAGAACGTGATCAACGGGGAGCTCGACAAGCCCAAGTACCAGTGCGGCTGCGAATGCACCGAGAGTGACCTGGATGGGACCTGCCTGCGGAAGGAGTGCGGCATCCAGCACTCGACGCTGGAGCAGGTATGGAGCTGCGAGGTGCCCAGCCCACCACGGTGGCCGGCCCTGATTCAGGTCCCCTGGCCAGGGTTCCGGGCTGTCGGGACCGCATCGCAGCCGTTCGACGATTTGCCTAACCCATTGTGCCGTGGCGACGGGTCTTGCCCTGTCACTCTCCTCGTCACTGGAGAGAACCAAACATTAGCTGAGCGTGTTTCAGGTCGGGTGTTTCCTGCCCTTTATCCGTTGCCTAATGTGACAGACTACCTGATGCCTCCTCCCTTTTCTCCCTCTCATGTGACAGACTATCTTGATATCCTCTCCAGGATAGTTGTTGGTTCAGACACACAGCCATGGTATACCCAATTGCTAGAGCCCGCTTTTTCCTCTGGTAAAACTTTGCATCTTCTCCAGCCTCGTTGCATGCCCTTCATGTTTGGGACCATTCCATACAATGCAGGGGGCGTACCCTTACATATCGATATACAGTGTATTGAAGTTCAGATGTTGTGGCGTGAAAGTGCATCAGTTATCAACTATGAACTGTTTAAGGGTTACGTACAAAGAGGAGGAGAAACAAATGAGTTTGTTGCAGGTTATGACTTCTTGAACACGACAGGATATGACCGCAATATAAATGTTTGGTACAACTCTACTTATAATGATAACACTGCATATTCATTTATCGCAGCATTACGAGTTCCACGATTGGTGAATGCAATATCCAATGCATACCTAAAATTTATCAGAGGAAGTGGGGTGGATATGCTGCTTGAATATGTAAAAGAGATGCCCAAAGTTGGAACAAGGTTTAGGCTTGATCTCTCTTCTCTTCTCAGTGTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTTATGTTGACATATCTGGTGTATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCTGAAGGATGGGCCTTACTGGCTAATTTCTTATGCTTATTTCTTTGCTCTATCGGTTATCTATATGACATTTTTTGTGATTTTTGGCTCCTTAATTGGTAATTTTCTTCCAATCTATTTTCACGAAGATTGCACTTGCATTTTGTGGCATCTTTCTTTTCATCTGTCAAGACAGCCACTGTGATTGGATACATTTATGTATTTGGCTCTGGCTTGCTAGGGGCATTTCTTTTTCGTTTCTTTGTTGAGGACAGGACCTTTCCCAATGGTTGGTTGTTAGTAATGGAGATTGTCCCAGGATTTTCCCTCTATCGAGGACTATATGAACTTGGCCAATATGCTTTCTCTGGAAGTGCTATGGGAGCCTCTGGCATGACATGGGGAAATTTGAGAGACCCAATCAATGGAATGTGTGGTATATTTATCATCATGACAGTAGAATGGGCATTTCTCCTTATGTTAGCATTCTATTTGGATCAAGTCTCTCCAGTAGGTGGTGGTGTCAGGAAAAGGCCCTTATTCTTCTTCAGGTGTTTACAGAAGAAGCACACACCGTCATTGCAGAAGCCTAGCTTTGTGCAACAGGGTTCTAAAGTAATTGTCGATATGGAGAAGCCAGATGTTGCTCAAGAAAGAGAAGTAGTTGAGCAACTTTTGGTAGGCCGCAATGCAAATCAAGCTATTATATGTCACAACCTCAAGAAGATCTATCCTGGAAGGGATGGAAACCCTGATAAGCTGGCGGTTCGAGGATTATCTCTTGCCGTACCAAAAGGGCAGTGCTTTGGAATGCTTGGCCCAAATGGAGCTGGGAAAACATCCTTCATTAGTATGATGATTGGGCTTGTTAAACCTACATCTGGTACTTCCTATGTTCATGGAATGGATATCAATATGGATATGGATCACATATATACAAACATGGGGGTGTGCCCACAGCATGACTTACTTTGGGAACCATTGACTGGAAAAGAACATCTGTTCTTTTATGGCAGGCTGAAGAATCTTAAAGGTGCTGTGTTGGTGAAGGCTGTTGAGGATGCTCTGAAGAGCGTAAATCTGTTCCATGGTGGTGTTGGTGATAAGCAAGTGGGAAAGTACAGCGGAGGCATGAAAGGAAGGCTCAGTGTGGCAATATCATTGATTGGAGACCCCAAAGTCGTTTTCATGGATGAACCAAGCACTGGGCTAGACCCCGCATCAAGAAATAACTTGTGGAATGTTGTGAAGGAGGCCAAGCGAAACCGTGCGATCGTTCTTACTACGCACTCGATGGAGGAGGCTGAAGTACTTTGTGATCGACTTGGCATCTTTGTCGATGGCGATTTCCAATGTCTTGGAAATCCTAAGGAGCTAAAGGCGAGATATGGGGGAGCATACATATTCACAATGACAACATCTCCAGACCAAGAACAAGAGGTTGAACGGCTAGTTCATGACTTGTCTCCGAGCGCAAATAAGATCTACCACCTATCTGGAACTCAAAAGTTCGAGCTGCCAAAGCAAGAGGTGAAAATAGCCGAGGTATTTCGCGCAGTTGAGGATGCGAAGAAACGGTTCACCGTGCATGCCTGGGGCCTGGTTGATACCACCTTGGAGGATGTCTTCATAAAGCATATATGATTCTTTAAAGTTCGAGCTGCCAAAGCAAGAGGTGAAAATAGCCGAGGTATTTCGCGCAGTTGAGGATGCGAAGAAACGGTTCACCGTGCATGCCTGGGGCCTGGTTGATACCACCTTGGAGGATGTCTTCATAAAGGTTGCCAAGGGAGCAAAGGCATCCAGTGATAATAGTTAGTTTGTGCATTGATAATATTGTGAGATTTATAGGCCGACTAATATTCTTTTATGTCTTGACTTTAGCATATATGATTCTTTTGTGGTTGTACAGAAACATATTATTCTCATACATCAGAAAAAAAAGTAACCATATGTAACATTTTTGTTTATTTTAAATGTACAAATGACTCAATATATCATTGCAGATATGCGGGAAT]




>consensus_6090#0
GAACCTCTGCTTCCAGGAAAGCCGCACCGATTGATCCCTTCTCTGTGTCTGCCTTGCTGC
CCGCGACGTGTTTGTGGATATGCCTGCCCGGTTCTTATGGTTTAATCATGCTGCTCTGGT
TTGGGGCTTTTGGATGGATGATGGGCAGCCATCGATTTCATCTGTGTTCTTGGGGGGGTG
GGAGGCATATGGTTGATGGTTTTTGGTGGTGGCATCTGATTCTTGTCTCTTTGGCTGCGG
GTGCAGAGGCGGAACCTGAAGACGAACGTCGGCATCACCGTCTTCCCGATCCTCATCTGC
GTGCTGCTCGTCGTGCTTCAGAACGTGATCAACGGGGAGCTCGACAAGCCCAAGTACCAG
TGCGGCTGCGAATGCACCGAGAGTGACCTGGATGGGACCTGCCTGCGGAAGGAGTGCGGC
ATCCAGCACTCGACGCTGGAGCAGGTATGGAGCTGCGAGGTGCCCAGCCCACCACGGTGG
CCGGCCCTGATTCAGGTCCCCTGGCCAGGGTTCCGGGCTGTCGGGACCGCATCGCAGCCG
TTCGACGATTTGCCTAACCCATTGTGCCGTGGCGACGGGTCTTGCCCTGTCACTCTCCTC
GTCACTGGAGAGAACCAAACATTAGCTGAGCGTGTTTCAGGTCGGGTGTTTCCTGCCCTT
TATCCGTTGCCTAATGTGACAGACTACCTGATGCCTCCTCCCTTTTCTCCCTCTCATGTG
ACAGACTATCTTGATATCCTCTCCAGGATAGTTGTTGGTTCAGACACACAGCCATGGTAT
ACCCAATTGCTAGAGCCCGCTTTTTCCTCTGGTAAAACTTTGCATCTTCTCCAGCCTCGT
TGCATGCCCTTCATGTTTGGGACCATTCCATACAATGCAGGGGGCGTACCCTTACATATC
GATATACAGTGTATTGAAGTTCAGATGTTGTGGCGTGAAAGTGCATCAGTTATCAACTAT
GAACTGTTTAAGGGTTACGTACAAAGAGGAGGAGAAACAAATGAGTTTGTTGCAGGTTAT
GACTTCTTGAACACGACAGGATATGACCGCAATATAAATGTTTGGTACAACTCTACTTAT
AATGATAACACTGCATATTCATTTATCGCAGCATTACGAGTTCCACGATTGGTGAATGCA
ATATCCAATGCATACCTAAAATTTATCAGAGGAAGTGGGGTGGATATGCTGCTTGAATAT
GTAAAAGAGATGCCCAAAGTTGGAACAAGGTTTAGGCTTGATCTCTCTTCTCTTCTCAGT
GTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTTATGTTGACATATCTGGTG
TATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCTGAAGGATGGGCCT
TACTGGCTAATTTCTTATGCTTATTTCTTTGCTCTATCGGTTATCTATATGACATTTTTT
GTGATTTTTGGCTCCTTAATTGGTAATTTTCTTCCAATCTATTTTCACGAAGATTGCACT
TGCATTTTGTGGCATCTTTCTTTTCATCTGTCAAGACAGCCACTGTGATTGGATACATTT
ATGTATTTGGCTCTGGCTTGCTAGGGGCATTTCTTTTTCGTTTCTTTGTTGAGGACAGGA
CCTTTCCCAATGGTTGGTTGTTAGTAATGGAGATTGTCCCAGGATTTTCCCTCTATCGAG
GACTATATGAACTTGGCCAATATGCTTTCTCTGGAAGTGCTATGGGAGCCTCTGGCATGA
CATGGGGAAATTTGAGAGACCCAATCAATGGAATGTGTGGTATATTTATCATCATGACAG
TAGAATGGGCATTTCTCCTTATGTTAGCATTCTATTTGGATCAAGTCTCTCCAGTAGGTG
GTGGTGTCAGGAAAAGGCCCTTATTCTTCTTCAGGTGTTTACAGAAGAAGCACACACCGT
CATTGCAGAAGCCTAGCTTTGTGCAACAGGGTTCTAAAGTAATTGTCGATATGGAGAAGC
CAGATGTTGCTCAAGAAAGAGAAGTAGTTGAGCAACTTTTGGTAGGCCGCAATGCAAATC
AAGCTATTATATGTCACAACCTCAAGAAGATCTATCCTGGAAGGGATGGAAACCCTGATA
AGCTGGCGGTTCGAGGATTATCTCTTGCCGTACCAAAAGGGCAGTGCTTTGGAATGCTTG
GCCCAAATGGAGCTGGGAAAACATCCTTCATTAGTATGATGATTGGGCTTGTTAAACCTA
CATCTGGTACTTCCTATGTTCATGGAATGGATATCAATATGGATATGGATCACATATATA
CAAACATGGGGGTGTGCCCACAGCATGACTTACTTTGGGAACCATTGACTGGAAAAGAAC
ATCTGTTCTTTTATGGCAGGCTGAAGAATCTTAAAGGTGCTGTGTTGGTGAAGGCTGTTG
AGGATGCTCTGAAGAGCGTAAATCTGTTCCATGGTGGTGTTGGTGATAAGCAAGTGGGAA
AGTACAGCGGAGGCATGAAAGGAAGGCTCAGTGTGGCAATATCATTGATTGGAGACCCCA
AAGTCGTTTTCATGGATGAACCAAGCACTGGGCTAGACCCCGCATCAAGAAATAACTTGT
GGAATGTTGTGAAGGAGGCCAAGCGAAACCGTGCGATCGTTCTTACTACGCACTCGATGG
AGGAGGCTGAAGTACTTTGTGATCGACTTGGCATCTTTGTCGATGGCGATTTCCAATGTC
TTGGAAATCCTAAGGAGCTAAAGGCGAGATATGGGGGAGCATACATATTCACAATGACAA
CATCTCCAGACCAAGAACAAGAGGTTGAACGGCTAGTTCATGACTTGTCTCCGAGCGCAA
ATAAGATCTACCACCTATCTGGAACTCAAAAGTTCGAGCTGCCAAAGCAAGAGGTGAAAA
TAGCCGAGGTATTTCGCGCAGTTGAGGATGCGAAGAAACGGTTCACCGTGCATGCCTGGG
GCCTGGTTGATACCACCTTGGAGGATGTCTTCATAAAGCATATATGATTCTTTAAAGTTC
GAGCTGCCAAAGCAAGAGGTGAAAATAGCCGAGGTATTTCGCGCAGTTGAGGATGCGAAG
AAACGGTTCACCGTGCATGCCTGGGGCCTGGTTGATACCACCTTGGAGGATGTCTTCATA
AAGGTTGCCAAGGGAGCAAAGGCATCCAGTGATAATAGTTAGTTTGTGCATTGATAATAT
TGTGAGATTTATAGGCCGACTAATATTCTTTTATGTCTTGACTTTAGCATATATGATTCT
TTTGTGGTTGTACAGAAACATATTATTCTCATACATCAGAAAAAAAAGTAACCATATGTA
ACATTTTTGTTTATTTTAAATGTACAAATGACTCAATATATCATTGCAGATATGCGGGAA
T

consensusID : consensus_6090#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 401
fasta sequence 
                              [TTCTCTTCTCAGTGTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTTATGTTGACATATCTGGTGTATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCTGAAGGATGGGCCTTACTGGCTAATTTNTTATGCTTATTTCTTTGCTCTATCGGTTATCTATATGACATTTTTTGTGATTTTTGGCTCCTTAATTGGTAATTTTCTTCCAATCTATTTTCACGAAGATTGCACTTGCA-TTTTTTGTGGCATCTTTCTT-TTCATCTGTCAAGACAGCCACTGTGA-TTGGATACATTTATGTATTTGGCTCTGGCTTGCTAGGGGCATTTCTTTTTCGTTTCTTTGTTGAGGACAGGACCTTTCCTCAACAAAAAAAAAAAAAA]

[+] EMBL AU075976             [TTCTCTTCTCAGTGTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTTATGTTGACATATCTGGTGTATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCTGAAGGATGGGCCTTACTGGCTAATTTNTTATGCTTATTTCTTTGCTCTATCGGTTATCTATATGACATTTTTTGTGATTTTTGGCTCCTTAATTGGTAATTTTCTTCCAATCTATTTTCACGAAGATTGCACTTGCA TTTTTTGTGGCATCTTTCTT TTCATCTGTCAAGACAGCCACTGTGA TTGGATACATTTATGTATTTGGCTCTGGCTTGCTAGGGGCATTTCTTTTTCGTTTCTTTGTTGAGGACAGGACCTTTCCTCAACAAAAAAAAAAAAAA]
[+] EMBL OSC100211            [TTCTCTTCTCAGTGTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTTATGTTGACATATCTGGTGTATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCTGAAGGATGGGCCTTACTGGCTAATTTCTTATGCTTATTTCTTTGCTCTATCGGTTATCTATATGACATTTTTTGTGATTTTTGGCTCCTTAATTGGTAATTTTCTTCCAATCTATTTTCACGAAGNTTGCACTTGCATTTTTTTGTGGCATCTNTCTTGTTCATCTGTCAAGACAGCCACTGTGATTTGGATAC                                                                                          ]




>consensus_6090#1
TTCTCTTCTCAGTGTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTTATGTT
GACATATCTGGTGTATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCT
GAAGGATGGGCCTTACTGGCTAATTTNTTATGCTTATTTCTTTGCTCTATCGGTTATCTA
TATGACATTTTTTGTGATTTTTGGCTCCTTAATTGGTAATTTTCTTCCAATCTATTTTCA
CGAAGATTGCACTTGCATTTTTTGTGGCATCTTTCTTTTCATCTGTCAAGACAGCCACTG
TGATTGGATACATTTATGTATTTGGCTCTGGCTTGCTAGGGGCATTTCTTTTTCGTTTCT
TTGTTGAGGACAGGACCTTTCCTCAACAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6090#0      GAACCTCTGCTTCCAGGAAAGCCGCACCGATTGATCCCTTCTCTGTGTCTGCCTTGCTGC 60
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      CCGCGACGTGTTTGTGGATATGCCTGCCCGGTTCTTATGGTTTAATCATGCTGCTCTGGT 120
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TTGGGGCTTTTGGATGGATGATGGGCAGCCATCGATTTCATCTGTGTTCTTGGGGGGGTG 180
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GGAGGCATATGGTTGATGGTTTTTGGTGGTGGCATCTGATTCTTGTCTCTTTGGCTGCGG 240
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GTGCAGAGGCGGAACCTGAAGACGAACGTCGGCATCACCGTCTTCCCGATCCTCATCTGC 300
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GTGCTGCTCGTCGTGCTTCAGAACGTGATCAACGGGGAGCTCGACAAGCCCAAGTACCAG 360
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TGCGGCTGCGAATGCACCGAGAGTGACCTGGATGGGACCTGCCTGCGGAAGGAGTGCGGC 420
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      ATCCAGCACTCGACGCTGGAGCAGGTATGGAGCTGCGAGGTGCCCAGCCCACCACGGTGG 480
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      CCGGCCCTGATTCAGGTCCCCTGGCCAGGGTTCCGGGCTGTCGGGACCGCATCGCAGCCG 540
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TTCGACGATTTGCCTAACCCATTGTGCCGTGGCGACGGGTCTTGCCCTGTCACTCTCCTC 600
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GTCACTGGAGAGAACCAAACATTAGCTGAGCGTGTTTCAGGTCGGGTGTTTCCTGCCCTT 660
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TATCCGTTGCCTAATGTGACAGACTACCTGATGCCTCCTCCCTTTTCTCCCTCTCATGTG 720
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      ACAGACTATCTTGATATCCTCTCCAGGATAGTTGTTGGTTCAGACACACAGCCATGGTAT 780
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      ACCCAATTGCTAGAGCCCGCTTTTTCCTCTGGTAAAACTTTGCATCTTCTCCAGCCTCGT 840
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TGCATGCCCTTCATGTTTGGGACCATTCCATACAATGCAGGGGGCGTACCCTTACATATC 900
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GATATACAGTGTATTGAAGTTCAGATGTTGTGGCGTGAAAGTGCATCAGTTATCAACTAT 960
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GAACTGTTTAAGGGTTACGTACAAAGAGGAGGAGAAACAAATGAGTTTGTTGCAGGTTAT 1020
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GACTTCTTGAACACGACAGGATATGACCGCAATATAAATGTTTGGTACAACTCTACTTAT 1080
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      AATGATAACACTGCATATTCATTTATCGCAGCATTACGAGTTCCACGATTGGTGAATGCA 1140
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      ATATCCAATGCATACCTAAAATTTATCAGAGGAAGTGGGGTGGATATGCTGCTTGAATAT 1200
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GTAAAAGAGATGCCCAAAGTTGGAACAAGGTTTAGGCTTGATCTCTCTTCTCTTCTCAGT 1260
consensus_6090#1      -----------------------------------------------TTCTCTTCTCAGT 13
                                                                     *************

consensus_6090#0      GTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTTATGTTGACATATCTGGTG 1320
consensus_6090#1      GTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTTATGTTGACATATCTGGTG 73
                      ************************************************************

consensus_6090#0      TATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCTGAAGGATGGGCCT 1380
consensus_6090#1      TATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCTGAAGGATGGGCCT 133
                      ************************************************************

consensus_6090#0      TACTGGCTAATTTCTTATGCTTATTTCTTTGCTCTATCGGTTATCTATATGACATTTTTT 1440
consensus_6090#1      TACTGGCTAATTTNTTATGCTTATTTCTTTGCTCTATCGGTTATCTATATGACATTTTTT 193
                      ************* **********************************************

consensus_6090#0      GTGATTTTTGGCTCCTTAATTGGTAATTTTCTTCCAATCTATTTTCACGAAGATTGCACT 1500
consensus_6090#1      GTGATTTTTGGCTCCTTAATTGGTAATTTTCTTCCAATCTATTTTCACGAAGATTGCACT 253
                      ************************************************************

consensus_6090#0      TGCATTTT--GTGGCATCTTTCTTTTCATCTGTCAAGACAGCCACTGTGATTGGATACAT 1558
consensus_6090#1      TGCATTTTTTGTGGCATCTTTCTTTTCATCTGTCAAGACAGCCACTGTGATTGGATACAT 313
                      ********  **************************************************

consensus_6090#0      TTATGTATTTGGCTCTGGCTTGCTAGGGGCATTTCTTTTTCGTTTCTTTGTTGAGGACAG 1618
consensus_6090#1      TTATGTATTTGGCTCTGGCTTGCTAGGGGCATTTCTTTTTCGTTTCTTTGTTGAGGACAG 373
                      ************************************************************

consensus_6090#0      GACCTTTCCCAATGGTTGGTTGTTAGTAATGGAGATTGTCCCAGGATTTTCCCTCTATCG 1678
consensus_6090#1      GACCTTTCCTCAACAAAAAAAAAAAAAA-------------------------------- 401
                      *********  *            *  *                                

consensus_6090#0      AGGACTATATGAACTTGGCCAATATGCTTTCTCTGGAAGTGCTATGGGAGCCTCTGGCAT 1738
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GACATGGGGAAATTTGAGAGACCCAATCAATGGAATGTGTGGTATATTTATCATCATGAC 1798
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      AGTAGAATGGGCATTTCTCCTTATGTTAGCATTCTATTTGGATCAAGTCTCTCCAGTAGG 1858
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TGGTGGTGTCAGGAAAAGGCCCTTATTCTTCTTCAGGTGTTTACAGAAGAAGCACACACC 1918
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GTCATTGCAGAAGCCTAGCTTTGTGCAACAGGGTTCTAAAGTAATTGTCGATATGGAGAA 1978
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GCCAGATGTTGCTCAAGAAAGAGAAGTAGTTGAGCAACTTTTGGTAGGCCGCAATGCAAA 2038
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TCAAGCTATTATATGTCACAACCTCAAGAAGATCTATCCTGGAAGGGATGGAAACCCTGA 2098
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TAAGCTGGCGGTTCGAGGATTATCTCTTGCCGTACCAAAAGGGCAGTGCTTTGGAATGCT 2158
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TGGCCCAAATGGAGCTGGGAAAACATCCTTCATTAGTATGATGATTGGGCTTGTTAAACC 2218
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TACATCTGGTACTTCCTATGTTCATGGAATGGATATCAATATGGATATGGATCACATATA 2278
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TACAAACATGGGGGTGTGCCCACAGCATGACTTACTTTGGGAACCATTGACTGGAAAAGA 2338
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      ACATCTGTTCTTTTATGGCAGGCTGAAGAATCTTAAAGGTGCTGTGTTGGTGAAGGCTGT 2398
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TGAGGATGCTCTGAAGAGCGTAAATCTGTTCCATGGTGGTGTTGGTGATAAGCAAGTGGG 2458
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      AAAGTACAGCGGAGGCATGAAAGGAAGGCTCAGTGTGGCAATATCATTGATTGGAGACCC 2518
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      CAAAGTCGTTTTCATGGATGAACCAAGCACTGGGCTAGACCCCGCATCAAGAAATAACTT 2578
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GTGGAATGTTGTGAAGGAGGCCAAGCGAAACCGTGCGATCGTTCTTACTACGCACTCGAT 2638
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GGAGGAGGCTGAAGTACTTTGTGATCGACTTGGCATCTTTGTCGATGGCGATTTCCAATG 2698
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TCTTGGAAATCCTAAGGAGCTAAAGGCGAGATATGGGGGAGCATACATATTCACAATGAC 2758
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      AACATCTCCAGACCAAGAACAAGAGGTTGAACGGCTAGTTCATGACTTGTCTCCGAGCGC 2818
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      AAATAAGATCTACCACCTATCTGGAACTCAAAAGTTCGAGCTGCCAAAGCAAGAGGTGAA 2878
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      AATAGCCGAGGTATTTCGCGCAGTTGAGGATGCGAAGAAACGGTTCACCGTGCATGCCTG 2938
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      GGGCCTGGTTGATACCACCTTGGAGGATGTCTTCATAAAGCATATATGATTCTTTAAAGT 2998
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TCGAGCTGCCAAAGCAAGAGGTGAAAATAGCCGAGGTATTTCGCGCAGTTGAGGATGCGA 3058
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      AGAAACGGTTCACCGTGCATGCCTGGGGCCTGGTTGATACCACCTTGGAGGATGTCTTCA 3118
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TAAAGGTTGCCAAGGGAGCAAAGGCATCCAGTGATAATAGTTAGTTTGTGCATTGATAAT 3178
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      ATTGTGAGATTTATAGGCCGACTAATATTCTTTTATGTCTTGACTTTAGCATATATGATT 3238
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      CTTTTGTGGTTGTACAGAAACATATTATTCTCATACATCAGAAAAAAAAGTAACCATATG 3298
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TAACATTTTTGTTTATTTTAAATGTACAAATGACTCAATATATCATTGCAGATATGCGGG 3358
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      AAT 3361
consensus_6090#1      ---


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)