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Oryza sativa
cluster # 6094 cluster # 6094       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6094#0 length = 1363 sequences # 3  

consensusID : consensus_6094#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1363
fasta sequence
                              [GCTCCATCATGTCCTTAGCGCAATGCCAAGAGGACTCTCCAGGGAGGAGTGGTTGCATGCGCTCCCCCGTGCGCTTGTCGCAGGGTTTGTTAAGACTGACAAAGAATTCCAACACAAAGGCCAAACATCTGGCACAACTGCCACATTCGTGATCATTGACGGATGGACTATCACCGTTGCTTCAGTTGGTGATTCCCGGTGTATTTTGGATGCTCAGGGTGGCGCTGTTTCTTTGCTTACTGTGGATCACAGACTAGAAGAAAATGTGGAGGAGAGGGAACGTGTCACTGCGAGTGGAGGTGAAGTTGGAAGGCTTAGTGTTGTTGGTGGGGCAGAGATTGGTCCACTGAGATGCTGGCCAGGAGGTTTATGTCTATCAAGATCCATTGGAGATATCGATGTTGGAGAATTTATAGTTCCTGTTCCCTATGTCAAGCAAGTGAAGTTGTCGAATGCTGGAGGGAGGCTTATTATTGCATCAGATGGCATTTGGGATGCCTTGTCATCAGAGGCAGCTGCAAAGTGTTGCAGAGGTTTGCCTGCTGAGCTTGCTGCTAAGCAAGTTGTTAAGGAGGCGCTCAGGACAAGAGGGCTAAAAGATGATACGACCTGCATCGTTGTTGACATGATCCCACCTGATCAAACAATACGTCATCCATCTCCACCAAAAAAGATAAACAAGTTGAAGTCTTTAATCTTTAGAAAAAAGACAAAAGACCATCCTAATAAACTGACTAAGCAGCTGTCAGCAGCGGGTATGGTGGAAGAGTTATTCGAAGAAGGTTCAGCAATGCTATCAGAGAGGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGTGCCATCTGCCAGGTGGACCTTGAACCAAGTGAAGGTATATCAGTCCATGCTGGTTCAATCTTCTCTTCCAGCTCCTCTAAGCCATGGGAAGGCCCTTTCCTTTGTTCCGATTGCCGCGACAAGAAGGATGCCATGGAAGGTAAACGACCAAGTGGCGTCAAGGTTCTATGATATCACTTGCAATCAGCCACCATTGTAGCTCCCGCAAACTCACCTTCTTTTTCAATTGTGAGCGCTCTTTGTGTTACAATTTTTCTCTCTCTCGATTTTAGGCGATTCGGATAATTTTAGGTTGCATTTTAATTTATTATGTGAGGAACTAGCCGCCGTGTTGTAAGTAGTATTGGGGAAAGGAAAATGTGAAGCGAGTGAATAGAGTATGTCTCCATTTTTCTCTTGTAGGTGCATGAACTAACTGCAGCTTGCCTCTCGCGAGTTGAGTATGATAGTCCGATTATTCTTTATTTGTAACTTATCGGTGCCTTTATTGCTAATGGATTATCCTAT]

[+] EMBL CB635459             [GCTCCATCATGTCCTTAGCGCAATGCCAAGAGGACTCTCCAGGGAGGAGTGGTTGCATGCGCTCCCCCGTGCGCTTGTCGCAGGGTTTGTTAAGACTGACAAAGAATTCCAACACAAAGGCCAAACATCTGGCACAACTGCCACATTCGTGATCATTGACGGATGGACTATCACCGTTGCTTCAGTTGGTGATTCCCGGTGTATTTTGGATGCTCAGGGTGGCGCTGTTTCTTTGCTTACTGTGGATCACAGACTAGAAGAAAATGTGGAGGAGAGGGAACGTGTCACTGCGAGTGGAGGTGAAGTTGGAAGGCTTAGTGTTGTTGGTGGGGCAGAGATTGGTCCACTGAGATGCTGGCCAGGAGGTTTATGTCTATCAAGATCCATTGGAGATATCGATGTTGGAGAATTTATAGTTCCTGTTCCCTATGTCAAGCAAGTGAAGTTGTCGAATGCTGGAGGGAGGCTTATTATTGCATCAGATGGCATTTGGGATGCCTTGTCATCAGAGGCAGCTGCAAAGTGTTGCAGAGGTTTGCCTGCTGAGCTTGCTGCTAAGCAAGTTGTTAAGGAGGCGCTCAGGACAAGAGGGCTAAAAGATGATACGACCTGCATCGTTGTTGACATGATCCCACCTGATCAAACAATACGTCATCCATCTCCACCAAAAAAGATAAACAAGTTGAAGTCTTTAATCTTTAGAAAAAAGACAAAAGACCATCCTAATAAACTGACTAAGCAGCTGTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK059183             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCTCAGGACAAGAGGGCTAAAAGATGATACGACCTGCATCGCTGTTGACATGATCCCACCTGATCAAACAATACGTCATCCATCTCCACCAAAAAAGATAAACAAGTTGAAGTCTTTAATCTTTAGAAAAAAGACAAAAGACCATCCTAATAAACTGACTAAGCAGCTGTCAGCAGCGGGTATGGTGGAAGAGTTATTCGAAGAAGGTTCAGCAATGCTATCAGAGAGGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGTGCCATCTGCCAGGTGGACCTTGAACCAAGTGAAGGTATATCAGTCCATGCTGGTTCAATCTTCTCTTCCAGCTCCTCTAAGCCATGGGAAGGCCCTTTCCTTTGTTCCGATTGCCGCGACAAGAAGGATGCCATGGAAGGTAAACGACCAAGTGGCGTCAAGGTTCTATGATATCACTTGCAATCAGCCACCATTGTAGCTCCCGCAAACTCACCTTCTTTTTCAATTGTGAGCGCTCTTTGTGTTACAATTTTTCTCTCTCTCGATTTTAGGCGATTCGGATAATTTTAGGTTGCATTTTAATTTATTATGTGAGGAACTAGCCGCCGTGTTGTAAGTAGTATTGGGGAAAGGAAAATGTGAAGCGAGTGAATAGAGTATGTCTCCATTTTTCTCTTGTAGGTGCATGAACTAACTGCAGCTTGCCTCTCGCGAGTTGAGTATGATAGTCCGATTATTCTTTATTTGTAACTTATCGGTGCCTTTATTGCTAATGGATTATCCTAT]
[-] EMBL CB635460             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TACGTCATCCATCTCCACCAAAAAAGATAAACAAGTTGAAGTCTTTAATCTTTAGAAAAAAGACAAAAGACCATCCTAATAAACTGACTAAGCAGCTGTCAGCAGCGGGTATGGTGGAAGAGTTATTCGAAGAAGGTTCAGCAATGCTATCAGAGAGGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGTGCCATCTGCCAGGTGGACCTTGAACCAAGTGAAGGTATATCAGTCCATGCTGGTTCAATCTTCTCTTCCAGCTCCTCTAAGCCATGGGAAGGCCCTTTCCTTTGTTCCGATTGCCGCGACAAGAAGGATGCCATGGAAGGTAAACGACCAAGTGGCGTCAAGGTTCTATGATATCACTTGCAATCAGCCACCATTGTAGCTCCCGCAAACTCACCTTCTTTTTCAATTGTGAGCGCTCTTTGTGTTACAATTTT  TCTCTCTCGATTTTAGGCGATTCGGATAATTTTAGGTTGCATTTTAATTTATTATGTGAGGAACTAGCCCCCGTGTTGTAAGTAGTATTGGGGAAAGGAAAATGTGAAGCGAGTGAATAGAGTATGTCTCCATTTTTCTCTTGTAGGTGCATGAACTAACTGGGGCTTCCCTCTCNCGAATT                                                                     ]


>consensus_6094#0 GCTCCATCATGTCCTTAGCGCAATGCCAAGAGGACTCTCCAGGGAGGAGTGGTTGCATGC GCTCCCCCGTGCGCTTGTCGCAGGGTTTGTTAAGACTGACAAAGAATTCCAACACAAAGG CCAAACATCTGGCACAACTGCCACATTCGTGATCATTGACGGATGGACTATCACCGTTGC TTCAGTTGGTGATTCCCGGTGTATTTTGGATGCTCAGGGTGGCGCTGTTTCTTTGCTTAC TGTGGATCACAGACTAGAAGAAAATGTGGAGGAGAGGGAACGTGTCACTGCGAGTGGAGG TGAAGTTGGAAGGCTTAGTGTTGTTGGTGGGGCAGAGATTGGTCCACTGAGATGCTGGCC AGGAGGTTTATGTCTATCAAGATCCATTGGAGATATCGATGTTGGAGAATTTATAGTTCC TGTTCCCTATGTCAAGCAAGTGAAGTTGTCGAATGCTGGAGGGAGGCTTATTATTGCATC AGATGGCATTTGGGATGCCTTGTCATCAGAGGCAGCTGCAAAGTGTTGCAGAGGTTTGCC TGCTGAGCTTGCTGCTAAGCAAGTTGTTAAGGAGGCGCTCAGGACAAGAGGGCTAAAAGA TGATACGACCTGCATCGTTGTTGACATGATCCCACCTGATCAAACAATACGTCATCCATC TCCACCAAAAAAGATAAACAAGTTGAAGTCTTTAATCTTTAGAAAAAAGACAAAAGACCA TCCTAATAAACTGACTAAGCAGCTGTCAGCAGCGGGTATGGTGGAAGAGTTATTCGAAGA AGGTTCAGCAATGCTATCAGAGAGGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATC AAGCTTGTTTACATGTGCCATCTGCCAGGTGGACCTTGAACCAAGTGAAGGTATATCAGT CCATGCTGGTTCAATCTTCTCTTCCAGCTCCTCTAAGCCATGGGAAGGCCCTTTCCTTTG TTCCGATTGCCGCGACAAGAAGGATGCCATGGAAGGTAAACGACCAAGTGGCGTCAAGGT TCTATGATATCACTTGCAATCAGCCACCATTGTAGCTCCCGCAAACTCACCTTCTTTTTC AATTGTGAGCGCTCTTTGTGTTACAATTTTTCTCTCTCTCGATTTTAGGCGATTCGGATA ATTTTAGGTTGCATTTTAATTTATTATGTGAGGAACTAGCCGCCGTGTTGTAAGTAGTAT TGGGGAAAGGAAAATGTGAAGCGAGTGAATAGAGTATGTCTCCATTTTTCTCTTGTAGGT GCATGAACTAACTGCAGCTTGCCTCTCGCGAGTTGAGTATGATAGTCCGATTATTCTTTA TTTGTAACTTATCGGTGCCTTTATTGCTAATGGATTATCCTAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)