cluster # 6095

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6095 cluster # 6095 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6095#0 length = 633 sequences # 2

consensus_6095#1 length = 323 sequences # 1

consensusID : consensus_6095#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence

                              [AAAAAATTGAGGAAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATGCTTGGGGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTGTTTGTTATATAAAAGNTCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGCTTCGGTTTCCATGGATNCGGCGGCGAGCATGGACATGTGGGACTTGGAGGTCCTGCCTNACCANCTGAGCTCATCCTCCCATGGCGGCGGCGGCCATGGCCNAGAAGTTCTTGGTGGTAAGATCAGCATCAGCTCTTGGGATTTGTCACGAAAGATTGCGTCTCATTCTTGTTGCGGTGATCGATTGGATGACAGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGNCGCCGCCGACATGGCNGTCGACGACGAGTTCAAAGGACATCGGCGTCGACGTGGCCGTGCCGGCCGAGACCAAGACGAGCCAAGAAGAGACCATGGCGGCCAAGGTAACAGAGGAGGAGGAGGAGGAGCCGTTCCAGGGCTCCGATGCCAAGGTTGTCGACGGCGACGACGACGGCGGCCGGCGAANAAGAAGAAGANGAGNAGGAGAAGGGGAAGAAGGCGGG]

[+] EMBL OSS11516A            [AAAAAATTGAGGAAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATGCTTGGGGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTGTTTGTTATATAAAAGNTCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGCTTCGGTTTCCATGGATNCGGCGGCGAGCATGGACATGTGGGACTTGGAGGTCCTGCCTNACCANCTGAGCTCAT                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSS13129A            [                                                                                                                                                                                     TCGGTTTCCATGGATGCGGCGGCGAGCATGGACATGTGGGACTGGGAGGTCCTGCCTGACCAGCTGAGCTCATCCTCCCATGGCGGCGGCGGCCATGGCCNAGAAGTTCTTGGTGGTAAGATCAGCATCAGCTCTTGGGATTTGTCACGAAAGATTGCGTCTCATTCTTGTTGCGGTGATCGATTGGATGACAGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGNCGCCGCCGACATGGCNGTCGACGACGAGTTCAAAGGACATCGGCGTCGACGTGGCCGTGCCGGCCGAGACCAAGACGAGCCAAGAAGAGACCATGGCGGCCAAGGTAACAGAGGAGGAGGAGGAGGAGCCGTTCCAGGGCTCCGATGCCAAGGTTGTCGACGGCGACGACGACGGCGGCCGGCGAANAAGAAGAAGANGAGNAGGAGAAGGGGAAGAAGGCGGG]




>consensus_6095#0
AAAAAATTGAGGAAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATG
CTTGGGGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTG
TTTGTTATATAAAAGNTCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGC
TTCGGTTTCCATGGATNCGGCGGCGAGCATGGACATGTGGGACTTGGAGGTCCTGCCTNA
CCANCTGAGCTCATCCTCCCATGGCGGCGGCGGCCATGGCCNAGAAGTTCTTGGTGGTAA
GATCAGCATCAGCTCTTGGGATTTGTCACGAAAGATTGCGTCTCATTCTTGTTGCGGTGA
TCGATTGGATGACAGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGNCGCCGCCGACA
TGGCNGTCGACGACGAGTTCAAAGGACATCGGCGTCGACGTGGCCGTGCCGGCCGAGACC
AAGACGAGCCAAGAAGAGACCATGGCGGCCAAGGTAACAGAGGAGGAGGAGGAGGAGCCG
TTCCAGGGCTCCGATGCCAAGGTTGTCGACGGCGACGACGACGGCGGCCGGCGAANAAGA
AGAAGANGAGNAGGAGAAGGGGAAGAAGGCGGG

consensusID : consensus_6095#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [AAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATGCTTGGNGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTGTTTGTTATATAAAAGATCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGCTTCGGTTTCCATGGATGNAGCGGCGAGCATGGACATGTGGGACTGGGAGGTCCTGCCTGACCAGCTGAGCTCATCCTCCCATNGCGGCNGCGGCCATGGCCGAGGAGTTCTTGGTGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGCCGCCG]

[+] EMBL OSS4256A             [AAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATGCTTGGNGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTGTTTGTTATATAAAAGATCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGCTTCGGTTTCCATGGATGNAGCGGCGAGCATGGACATGTGGGACTGGGAGGTCCTGCCTGACCAGCTGAGCTCATCCTCCCATNGCGGCNGCGGCCATGGCCGAGGAGTTCTTGGTGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGCCGCCG]




>consensus_6095#1
AAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATGCTTGGNGAGCAT
CCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTGTTTGTTATATAA
AAGATCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGCTTCGGTTTCCAT
GGATGNAGCGGCGAGCATGGACATGTGGGACTGGGAGGTCCTGCCTGACCAGCTGAGCTC
ATCCTCCCATNGCGGCNGCGGCCATGGCCGAGGAGTTCTTGGTGCTCAAGAAACCGAGGA
ATCGAATCTTGACGCCGCCGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6095#0      AAAAAATTGAGGAAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATG 60
consensus_6095#1      ------------AAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATG 48
                                  ************************************************

consensus_6095#0      CTTGGGGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTG 120
consensus_6095#1      CTTGGNGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTG 108
                      ***** ******************************************************

consensus_6095#0      TTTGTTATATAAAAGNTCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGC 180
consensus_6095#1      TTTGTTATATAAAAGATCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGC 168
                      *************** ********************************************

consensus_6095#0      TTCGGTTTCCATGGATNCGGCGGCGAGCATGGACATGTGGGACTTGGAGGTCCTGCCTNA 240
consensus_6095#1      TTCGGTTTCCATGGATGNAGCGGCGAGCATGGACATGTGGGACTGGGAGGTCCTGCCTGA 228
                      ****************   ************************* ************* *

consensus_6095#0      CCANCTGAGCTCATCCTCCCATGGCGGCGGCGGCCATGGCCNAGAAGTTCTTGGTGGTAA 300
consensus_6095#1      CCAGCTGAGCTCATCCTCCCATNGCGGCNGCGGCCATGGCCGAGGAGTTCTTGGTGCTCA 288
                      *** ****************** ***** ************ ** *********** * *

consensus_6095#0      GATCAGCATCAGCTCTTGGGATTTGTCACGAAAGATTGCGTCTCATTCTTGTTGCGGTGA 360
consensus_6095#1      AGAAACCG--AGGAATCGAATCTTGACGCCGCCGCCG----------------------- 323
                          * *   **   * *    *** * *    *                          

consensus_6095#0      TCGATTGGATGACAGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGNCGCCGCCGACA 420
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      TGGCNGTCGACGACGAGTTCAAAGGACATCGGCGTCGACGTGGCCGTGCCGGCCGAGACC 480
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      AAGACGAGCCAAGAAGAGACCATGGCGGCCAAGGTAACAGAGGAGGAGGAGGAGGAGCCG 540
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      TTCCAGGGCTCCGATGCCAAGGTTGTCGACGGCGACGACGACGGCGGCCGGCGAANAAGA 600
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      AGAAGANGAGNAGGAGAAGGGGAAGAAGGCGGG 633
consensus_6095#1      ---------------------------------